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4dn:methods [2024/01/16 09:56]
rcalandrelli created 		4dn:methods [2025/04/22 16:21] (current)
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-====== 4DN-created methods to search in full scope analysis ​======+====== 4DN Methods ​======
  
-  * C-BERST+[[https://​docs.google.com/​spreadsheets/​d/​1z89XhSBqEyHvXvy6QRDzruR43E6jHvW-1sa8yEcd0wY/​edit?​usp=sharing|Here is a list]] of the 4DN-created methods to search in full scope analysis to identify how used they are across publications.
  
-  * ChIA-Drop +Please let us know if your method is missing.
- +
-  * ChIA-PET +
- +
-  * Chromatin interaction analysis by paired-end tag sequencing +
- +
-  * Chromatin interaction analysis in droplet +
- +
-  * COLA +
- +
-  * concatemer ligation assay +
- +
-  * DamID seq +
- +
-  * DNA multiplexed error-robust fluorescence in situ hybridization +
- +
-  * DNA-MERFISH +
- +
-  * DNase Hi-C +
- +
-  * DNAseqFISH +
- +
-  * E/L Repli-seq +
- +
-  * FISH omics +
- +
-  * Genome architecture mapping +
- +
-  * GPSeq +
- +
-  * Hi-C 3.0 (not “Hi-C” alone) +
- +
-  * Hi-M +
- +
-  * iMARGI +
- +
-  * in situ ChIA-PET +
- +
-  * in situ genomic sequencing +
- +
-  * in situ Hi-C +
- +
-  * in situ mapping of RNA-genome interactions +
- +
-  * integrative genome modeling platform +
- +
-  * LC-HI-C +
- +
-  * Liquid chromatin Hi-C +
- +
-  * Local proteome of specific genomic loci +
- +
-  * MC-3C +
- +
-  * Micro-C +
- +
-  * MINA +
- +
-  * Multi-contact 3C +
- +
-  * multiplexed FISH +
- +
-  * multiplexed imaging of nucleome architecture +
- +
-  * OligoDNA-PAINT +
- +
-  * OligoFISSEQ +
- +
-  * Oligopaint fluorescent in situ sequencing +
- +
-  * Oligopaints +
- +
-  * OligoSTORM +
- +
-  * Optical reconstruction of chromatin architecture +
- +
-  * ORCA +
- +
-  * PLAC-seq +
- +
-  * Proximity-ligation assisted ChIP-seq +
- +
-  * Repli-seq +
- +
-  * sci-Hi-C +
- +
-  * sci-RNA-seq +
- +
-  * sci-TIP +
- +
-  * seqFISH +
- +
-  * Split-pool recognition of interactions by tagextension +
- +
-  * SPRITE +
- +
-  * Time-resolved DamID +
- +
-  * TSA sequencing +
- +
-  * TSA-seq+
  
  
4dn/methods.1705427810.txt.gz · Last modified: 2025/04/22 16:21 (external edit)

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