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4dn:phase1:data_submission_and_release [2019/02/18 17:35]
127.0.0.1 external edit 		4dn:phase1:data_submission_and_release [2025/04/22 16:21] (current)
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   - 3C-seq: Job Dekker,   - 3C-seq: Job Dekker,
 +
   - 4C-seq   - 4C-seq
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   - 5C: Job Dekker   - 5C: Job Dekker
 +
   - Hi-C: Paul Kaufman, Rafael Casellas, Job Dekker, John Lis, Chuck Murry   - Hi-C: Paul Kaufman, Rafael Casellas, Job Dekker, John Lis, Chuck Murry
 +
   - ChIA-PET: Yijun Ruan,   - ChIA-PET: Yijun Ruan,
 +
   - Capture-Hi-C:​ Rafael Casellas, Job Dekker, Chuck Murry   - Capture-Hi-C:​ Rafael Casellas, Job Dekker, Chuck Murry
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   - TCC: Lin Chenì   - TCC: Lin Chenì
 +
   - In situ Hi-C: Bill Noble and Christine Disteche, Job Dekker, Chuck Murry   - In situ Hi-C: Bill Noble and Christine Disteche, Job Dekker, Chuck Murry
 +
   - Dnase Hi-C: Bill Noble and Christine Disteche, Jay Shendure, Chuck Murry   - Dnase Hi-C: Bill Noble and Christine Disteche, Jay Shendure, Chuck Murry
 +
   - Micro-C: Job Dekker   - Micro-C: Job Dekker
 +
   - GAM: Ana Pombo   - GAM: Ana Pombo
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   - COLA   - COLA
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   - Single-cell Hi-C: Job Dekker, Chuck Murry   - Single-cell Hi-C: Job Dekker, Chuck Murry
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   - Combinatorial single-cell Hi-C: Bill Noble and Christine Disteche, Jay Shendure, Chuck Murry   - Combinatorial single-cell Hi-C: Bill Noble and Christine Disteche, Jay Shendure, Chuck Murry
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   - Split-pool Barcoding: Lin Chen, Mitch Guttman, Job Dekker   - Split-pool Barcoding: Lin Chen, Mitch Guttman, Job Dekker
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   - RICh-PET: Yijun Ruan   - RICh-PET: Yijun Ruan
 +
   - ChIP RICh-PET: Yijun Ruan   - ChIP RICh-PET: Yijun Ruan
 +
   - Distance Hi-C: John Lis   - Distance Hi-C: John Lis
 +
   - DamID and Single-Cell DamID: Bas van Steensel   - DamID and Single-Cell DamID: Bas van Steensel
 +
   - TSA-Seq: Andrew Belmont   - TSA-Seq: Andrew Belmont
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   - Repli-Seq: Dave Gilbert   - Repli-Seq: Dave Gilbert
 +
   - TRIP: Bas van Steensel   - TRIP: Bas van Steensel
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   - Photo-crosslinking based TCC: Lin Chen   - Photo-crosslinking based TCC: Lin Chen
 +
   - RNA-Seq: Bas van Steensel (mRNA), Chuck Murry   - RNA-Seq: Bas van Steensel (mRNA), Chuck Murry
 +
   - Nucleolar-associated DNA: Paul Kaufman   - Nucleolar-associated DNA: Paul Kaufman
 +
   - ATAC-Seq: Job Dekker, Chuck Murry   - ATAC-Seq: Job Dekker, Chuck Murry
 +
   - Single-cell repli-seq: Dave Gilbert   - Single-cell repli-seq: Dave Gilbert
  
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   - RNA FISH: Arjun Raj, Thomas Gregor   - RNA FISH: Arjun Raj, Thomas Gregor
 +
   - CryoFM (small images series for proof of concept): David Grunwald   - CryoFM (small images series for proof of concept): David Grunwald
 +
   - Live cell: Mark Groudine, Stanley Qi (genomic loci), Job Dekker (Cas9)   - Live cell: Mark Groudine, Stanley Qi (genomic loci), Job Dekker (Cas9)
 +
   - Immunostaining:​ Mark Groudine   - Immunostaining:​ Mark Groudine
 +
   - 4D deconvolved stacks: Mark Groudine   - 4D deconvolved stacks: Mark Groudine
 +
   - FISH: Mark Groudine, Bill Noble and Christine Disteche   - FISH: Mark Groudine, Bill Noble and Christine Disteche
 +
   - Time-lapse movies (tif or other formats): Thomas Gregor, Mike Levine   - Time-lapse movies (tif or other formats): Thomas Gregor, Mike Levine
 +
   - Single-molecule tracking: Xavier Darzacq, Thomas Gregor   - Single-molecule tracking: Xavier Darzacq, Thomas Gregor
 +
   - High-throughput imaging: Tom Misteli (spinning disk confocal)   - High-throughput imaging: Tom Misteli (spinning disk confocal)
 +
   - Single-live-cell tracking of replication:​ Dave Gilbert   - Single-live-cell tracking of replication:​ Dave Gilbert
 +
   - Superresolution microscopy (PALM/​STORM):​ Jonas Ries, Job Dekker   - Superresolution microscopy (PALM/​STORM):​ Jonas Ries, Job Dekker
 +
   - HIPmap (FISH): Job Dekker   - HIPmap (FISH): Job Dekker
 +
   - (Unspecified):​ Thoru Pederson   - (Unspecified):​ Thoru Pederson
  
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 Imaging technologies currently in use or being developed in the 4DN network (being compiled by Clodagh O'​shea). Imaging technologies currently in use or being developed in the 4DN network (being compiled by Clodagh O'​shea).
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 +------------------------------------------------------------------------------------------
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 +{{medialist>​4dn:​data_submission_and_release:​}}
  
  
4dn/phase1/data_submission_and_release.1550540143.txt.gz · Last modified: 2025/04/22 16:21 (external edit)

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