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4dn:phase1:working_groups:imaging_data_standards:imaging_approaches_to_genomics_subgroup
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4dn:phase1:working_groups:imaging_data_standards:imaging_approaches_to_genomics_subgroup [2019/01/18 09:18] rcalandrelli [Meetings] |
4dn:phase1:working_groups:imaging_data_standards:imaging_approaches_to_genomics_subgroup [2025/04/22 16:21] (current) |
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| ^Date^Presenters / Topics^Attachments / Links / Minutes| | ^Date^Presenters / Topics^Attachments / Links / Minutes| | ||
| - | |5/10/2018|Initial goals and tasks discussion|[[https://docs.google.com/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDo3NDkzYTBmZmQxMTAwYWIx|Meeting Notes]]| | + | |5/10/2018|~~TABLE_CELL_WRAP_START~~<WRAP> |
| - | |6/14/2018|Selection of the JAWG biological questions \\ Discussion on the microscopy/labelling techniques|[[https://docs.google.com/document/d/1TXFaNPQq_mNod0w2grFNthutzOl5efL6e4bS3Vght1Y/edit?usp=sharing|Meeting Agenda]] \\ [[https://docs.google.com/spreadsheets/d/1xPUOPXCe2MDif7MuYIB1bhZU5umGoclwjdTOtRbGmmo/edit?usp=sharing|Microscopy and Labelling Techniques Table]] \\ [[https://docs.google.com/spreadsheets/d/1urn5n9yK6lYhwkenw6VgzQMVVOU1jjNZs7LYlhrf_9U/edit?usp=sharing|Oligo DNA/RNA FISH Experimental conditions]] \\ [[https://docs.google.com/document/d/1VMcXLPP8J_E5_Hj67et-22BkevrptqJlpfNUoJ6gql4/edit|Meeting Notes]]| | + | |
| - | |7/12/2018|Elizabeth Finn (Misteli Lab) presentation + discussion \\ Improvements to the table and request for contributions \\ Selection of live cell imaging approaches for the JAWG \\ Selection of measurements needed to compare genome structure as measures by imaging and sequencing: distances, contact frequencies, both, more?|[[https://docs.google.com/document/d/1DfZ-wgeGnhDbObSxqLbdeP3GHTwXx4_kyQH7IBponDE/edit#|Meeting Agenda]]| | + | |
| - | |8/9/2018|Johan Gibcus (Dekker Lab) presentation + discussion| | | + | |
| - | |9/13/2018|Long Cai (caltech) presentation + discussion| | | + | |
| - | |10/11/2018|Progress report on microscopy labelling techniques information gathering \\ Discussion of the final deliverables for the group|[[https://docs.google.com/document/d/1xodUdJk5pPi00abZ8Txko8jDsOhAjOt6eIL86ezoUEM/edit?usp=sharing|Meeting Agenda]]| | + | |
| - | |Row 1 Column 1|<WRAP> \\ - Item 1 \\ - Item 2 \\ - Item 3 \\ \\ </WRAP>| | + | * Initial goals and tasks discussion |
| - | | |Row 2 Col 1|Row 2 Col 2| | + | |
| - | \\ | + | </WRAP>~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~<WRAP> |
| + | * [[https://docs.google.com/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDo3NDkzYTBmZmQxMTAwYWIx|Meeting Notes]] | ||
| + | |||
| + | </WRAP>~~TABLE_CELL_WRAP_STOP~~| | ||
| + | |6/14/2018|~~TABLE_CELL_WRAP_START~~<WRAP> | ||
| + | |||
| + | * Selection of the JAWG biological questions | ||
| + | * Discussion on the microscopy/labelling techniques | ||
| + | |||
| + | </WRAP>~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~<WRAP> | ||
| + | |||
| + | * [[https://docs.google.com/document/d/1TXFaNPQq_mNod0w2grFNthutzOl5efL6e4bS3Vght1Y/edit?usp=sharing|Meeting Agenda]] | ||
| + | * [[https://docs.google.com/spreadsheets/d/1xPUOPXCe2MDif7MuYIB1bhZU5umGoclwjdTOtRbGmmo/edit?usp=sharing|Microscopy and Labelling Techniques Table]] | ||
| + | * [[https://docs.google.com/spreadsheets/d/1urn5n9yK6lYhwkenw6VgzQMVVOU1jjNZs7LYlhrf_9U/edit?usp=sharing|Oligo DNA/RNA FISH Experimental conditions]] | ||
| + | * [[https://docs.google.com/document/d/1VMcXLPP8J_E5_Hj67et-22BkevrptqJlpfNUoJ6gql4/edit|Meeting Notes]] | ||
| + | |||
| + | </WRAP>~~TABLE_CELL_WRAP_STOP~~| | ||
| + | |7/12/2018|~~TABLE_CELL_WRAP_START~~<WRAP> | ||
| + | |||
| + | * Elizabeth Finn (Misteli Lab) presentation + discussion | ||
| + | * Improvements to the table and request for contributions | ||
| + | * Selection of live cell imaging approaches for the JAWG | ||
| + | * Selection of measurements needed to compare genome structure as measures by imaging and sequencing: distances, contact frequencies, both, more? | ||
| + | |||
| + | </WRAP>~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~<WRAP> | ||
| + | |||
| + | * [[https://docs.google.com/document/d/1DfZ-wgeGnhDbObSxqLbdeP3GHTwXx4_kyQH7IBponDE/edit#|Meeting Agenda]] | ||
| + | |||
| + | </WRAP>~~TABLE_CELL_WRAP_STOP~~| | ||
| + | |8/9/2018|~~TABLE_CELL_WRAP_START~~<WRAP> | ||
| + | |||
| + | * Johan Gibcus (Dekker Lab) presentation + discussion | ||
| + | |||
| + | </WRAP>~~TABLE_CELL_WRAP_STOP~~|~~CKG_TABLE_NBSP~~| | ||
| + | |9/13/2018|~~TABLE_CELL_WRAP_START~~<WRAP> | ||
| + | |||
| + | * Long Cai (caltech) presentation + discussion | ||
| + | |||
| + | </WRAP>~~TABLE_CELL_WRAP_STOP~~|~~CKG_TABLE_NBSP~~| | ||
| + | |10/11/2018|~~TABLE_CELL_WRAP_START~~<WRAP> | ||
| + | |||
| + | * Progress report on microscopy labelling techniques information gathering | ||
| + | * Discussion of the final deliverables for the group | ||
| + | |||
| + | </WRAP>~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~<WRAP> | ||
| + | |||
| + | * [[https://docs.google.com/document/d/1xodUdJk5pPi00abZ8Txko8jDsOhAjOt6eIL86ezoUEM/edit?usp=sharing|Meeting Agenda]] | ||
| + | |||
| + | </WRAP>~~TABLE_CELL_WRAP_STOP~~| | ||
| ===== Meeting Information ===== | ===== Meeting Information ===== | ||
| Line 73: | Line 115: | ||
| ===== Reference Links ===== | ===== Reference Links ===== | ||
| - | * Joint 4D Nucleome Analysis <font inherit/inherit;;inherit;;#e74c3c>(add link)</font> | + | * [[4dn:phase1:working_groups:joint_4d_nucleome_analysis|Joint 4D Nucleome Analysis]] |
| * [[https://docs.google.com/spreadsheets/d/1kOW2m_DSKQJaupXnANqImwqJ3BmjUaPYhR8rxG3pgxM/edit#gid=251396676|NOFIC Shared LOCI List]] | * [[https://docs.google.com/spreadsheets/d/1kOW2m_DSKQJaupXnANqImwqJ3BmjUaPYhR8rxG3pgxM/edit#gid=251396676|NOFIC Shared LOCI List]] | ||
| * [[https://docs.google.com/spreadsheets/d/1kOW2m_DSKQJaupXnANqImwqJ3BmjUaPYhR8rxG3pgxM/edit#gid=251396676|Data Generation Plan]] | * [[https://docs.google.com/spreadsheets/d/1kOW2m_DSKQJaupXnANqImwqJ3BmjUaPYhR8rxG3pgxM/edit#gid=251396676|Data Generation Plan]] | ||
| Line 79: | Line 121: | ||
| ===== Calendar ===== | ===== Calendar ===== | ||
| - | {{cal>imaging-to-omics-subgroup@4dnucleome.org}} | + | {{url>https://calendar.google.com/calendar/embed?src=4dnucleome.org_eo4cpha38fkq666i07cecms9po%40group.calendar.google.com&ctz=America%2FLos_Angeles 800,400 noborder|4DN OMICS WG Calendar}} |
| + | |||
| + | ------------------------------------------------------------------------------------------ | ||
| - | \\ | + | {{medialist>4dn:working_groups:imaging_data_standards:imaging_approaches_to_genomics_subgroup:}} |
4dn/phase1/working_groups/imaging_data_standards/imaging_approaches_to_genomics_subgroup.1547831933.txt.gz · Last modified: 2025/04/22 16:21 (external edit)