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4dn:phase1:working_groups:imaging_data_standards:imaging_approaches_to_genomics_subgroup
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4dn:phase1:working_groups:imaging_data_standards:imaging_approaches_to_genomics_subgroup [2019/01/18 09:25] rcalandrelli [Meetings] |
4dn:phase1:working_groups:imaging_data_standards:imaging_approaches_to_genomics_subgroup [2025/04/22 16:21] (current) |
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| ^Date^Presenters / Topics^Attachments / Links / Minutes| | ^Date^Presenters / Topics^Attachments / Links / Minutes| | ||
| - | |5/10/2018|Initial goals and tasks discussion|[[https://docs.google.com/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDo3NDkzYTBmZmQxMTAwYWIx|Meeting Notes]]| | + | |5/10/2018|~~TABLE_CELL_WRAP_START~~<WRAP> |
| - | |6/14/2018|• Selection of the JAWG biological questions \\ • Discussion on the microscopy/labelling techniques|[[https://docs.google.com/document/d/1TXFaNPQq_mNod0w2grFNthutzOl5efL6e4bS3Vght1Y/edit?usp=sharing|Meeting Agenda]] \\ [[https://docs.google.com/spreadsheets/d/1xPUOPXCe2MDif7MuYIB1bhZU5umGoclwjdTOtRbGmmo/edit?usp=sharing|Microscopy and Labelling Techniques Table]] \\ [[https://docs.google.com/spreadsheets/d/1urn5n9yK6lYhwkenw6VgzQMVVOU1jjNZs7LYlhrf_9U/edit?usp=sharing|Oligo DNA/RNA FISH Experimental conditions]] \\ [[https://docs.google.com/document/d/1VMcXLPP8J_E5_Hj67et-22BkevrptqJlpfNUoJ6gql4/edit|Meeting Notes]]| | + | |
| - | |7/12/2018|• Elizabeth Finn (Misteli Lab) presentation + discussion \\ • Improvements to the table and request for contributions \\ • Selection of live cell imaging approaches for the JAWG \\ • Selection of measurements needed to compare genome structure as measures by imaging and sequencing: distances, contact frequencies, both, more?|[[https://docs.google.com/document/d/1DfZ-wgeGnhDbObSxqLbdeP3GHTwXx4_kyQH7IBponDE/edit#|Meeting Agenda]]| | + | |
| - | |8/9/2018|Johan Gibcus (Dekker Lab) presentation + discussion| | | + | |
| - | |9/13/2018|Long Cai (caltech) presentation + discussion| | | + | |
| - | |10/11/2018|• Progress report on microscopy labelling techniques information gathering \\ • Discussion of the final deliverables for the group|[[https://docs.google.com/document/d/1xodUdJk5pPi00abZ8Txko8jDsOhAjOt6eIL86ezoUEM/edit?usp=sharing|Meeting Agenda]]| | + | |
| - | \\ | + | * Initial goals and tasks discussion |
| + | </WRAP>~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~<WRAP> | ||
| + | |||
| + | * [[https://docs.google.com/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDo3NDkzYTBmZmQxMTAwYWIx|Meeting Notes]] | ||
| + | |||
| + | </WRAP>~~TABLE_CELL_WRAP_STOP~~| | ||
| + | |6/14/2018|~~TABLE_CELL_WRAP_START~~<WRAP> | ||
| + | |||
| + | * Selection of the JAWG biological questions | ||
| + | * Discussion on the microscopy/labelling techniques | ||
| + | |||
| + | </WRAP>~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~<WRAP> | ||
| + | |||
| + | * [[https://docs.google.com/document/d/1TXFaNPQq_mNod0w2grFNthutzOl5efL6e4bS3Vght1Y/edit?usp=sharing|Meeting Agenda]] | ||
| + | * [[https://docs.google.com/spreadsheets/d/1xPUOPXCe2MDif7MuYIB1bhZU5umGoclwjdTOtRbGmmo/edit?usp=sharing|Microscopy and Labelling Techniques Table]] | ||
| + | * [[https://docs.google.com/spreadsheets/d/1urn5n9yK6lYhwkenw6VgzQMVVOU1jjNZs7LYlhrf_9U/edit?usp=sharing|Oligo DNA/RNA FISH Experimental conditions]] | ||
| + | * [[https://docs.google.com/document/d/1VMcXLPP8J_E5_Hj67et-22BkevrptqJlpfNUoJ6gql4/edit|Meeting Notes]] | ||
| + | |||
| + | </WRAP>~~TABLE_CELL_WRAP_STOP~~| | ||
| + | |7/12/2018|~~TABLE_CELL_WRAP_START~~<WRAP> | ||
| + | |||
| + | * Elizabeth Finn (Misteli Lab) presentation + discussion | ||
| + | * Improvements to the table and request for contributions | ||
| + | * Selection of live cell imaging approaches for the JAWG | ||
| + | * Selection of measurements needed to compare genome structure as measures by imaging and sequencing: distances, contact frequencies, both, more? | ||
| + | |||
| + | </WRAP>~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~<WRAP> | ||
| + | |||
| + | * [[https://docs.google.com/document/d/1DfZ-wgeGnhDbObSxqLbdeP3GHTwXx4_kyQH7IBponDE/edit#|Meeting Agenda]] | ||
| + | |||
| + | </WRAP>~~TABLE_CELL_WRAP_STOP~~| | ||
| + | |8/9/2018|~~TABLE_CELL_WRAP_START~~<WRAP> | ||
| + | |||
| + | * Johan Gibcus (Dekker Lab) presentation + discussion | ||
| + | |||
| + | </WRAP>~~TABLE_CELL_WRAP_STOP~~|~~CKG_TABLE_NBSP~~| | ||
| + | |9/13/2018|~~TABLE_CELL_WRAP_START~~<WRAP> | ||
| + | |||
| + | * Long Cai (caltech) presentation + discussion | ||
| + | |||
| + | </WRAP>~~TABLE_CELL_WRAP_STOP~~|~~CKG_TABLE_NBSP~~| | ||
| + | |10/11/2018|~~TABLE_CELL_WRAP_START~~<WRAP> | ||
| + | |||
| + | * Progress report on microscopy labelling techniques information gathering | ||
| + | * Discussion of the final deliverables for the group | ||
| + | |||
| + | </WRAP>~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~<WRAP> | ||
| + | |||
| + | * [[https://docs.google.com/document/d/1xodUdJk5pPi00abZ8Txko8jDsOhAjOt6eIL86ezoUEM/edit?usp=sharing|Meeting Agenda]] | ||
| + | |||
| + | </WRAP>~~TABLE_CELL_WRAP_STOP~~| | ||
| ===== Meeting Information ===== | ===== Meeting Information ===== | ||
| Line 70: | Line 115: | ||
| ===== Reference Links ===== | ===== Reference Links ===== | ||
| - | * Joint 4D Nucleome Analysis <font inherit/inherit;;inherit;;#e74c3c>(add link)</font> | + | * [[4dn:phase1:working_groups:joint_4d_nucleome_analysis|Joint 4D Nucleome Analysis]] |
| * [[https://docs.google.com/spreadsheets/d/1kOW2m_DSKQJaupXnANqImwqJ3BmjUaPYhR8rxG3pgxM/edit#gid=251396676|NOFIC Shared LOCI List]] | * [[https://docs.google.com/spreadsheets/d/1kOW2m_DSKQJaupXnANqImwqJ3BmjUaPYhR8rxG3pgxM/edit#gid=251396676|NOFIC Shared LOCI List]] | ||
| * [[https://docs.google.com/spreadsheets/d/1kOW2m_DSKQJaupXnANqImwqJ3BmjUaPYhR8rxG3pgxM/edit#gid=251396676|Data Generation Plan]] | * [[https://docs.google.com/spreadsheets/d/1kOW2m_DSKQJaupXnANqImwqJ3BmjUaPYhR8rxG3pgxM/edit#gid=251396676|Data Generation Plan]] | ||
| Line 76: | Line 121: | ||
| ===== Calendar ===== | ===== Calendar ===== | ||
| - | {{cal>imaging-to-omics-subgroup@4dnucleome.org}} | + | {{url>https://calendar.google.com/calendar/embed?src=4dnucleome.org_eo4cpha38fkq666i07cecms9po%40group.calendar.google.com&ctz=America%2FLos_Angeles 800,400 noborder|4DN OMICS WG Calendar}} |
| + | |||
| + | ------------------------------------------------------------------------------------------ | ||
| - | \\ | + | {{medialist>4dn:working_groups:imaging_data_standards:imaging_approaches_to_genomics_subgroup:}} |
4dn/phase1/working_groups/imaging_data_standards/imaging_approaches_to_genomics_subgroup.1547832307.txt.gz · Last modified: 2025/04/22 16:21 (external edit)