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4dn:phase1:working_groups:imaging_data_standards:microscope_calibration_project [2019/02/14 11:35]
rcalandrelli created
4dn:phase1:working_groups:imaging_data_standards:microscope_calibration_project [2025/04/22 16:21] (current)
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 ====== Microscope Calibration Project ====== ====== Microscope Calibration Project ======
  
-{{:4dn:​microscope.png?​nolink&​1114x371}}\\+{{4dn:phase1:​microscope.png?​nolink&​800x266}}
  
 ===== Introduction ===== ===== Introduction =====
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 This is the current (October 2017 to ~March 2018) project part. The aim is to establish a database with monthly recorded multi-color bead stacks from microscopes within the 4DN consortium. Bead stacks are used for two reasons: This is the current (October 2017 to ~March 2018) project part. The aim is to establish a database with monthly recorded multi-color bead stacks from microscopes within the 4DN consortium. Bead stacks are used for two reasons:
  
-  -+  - To create a reference data set that can be used to compare results from the microscope of any specific user against other comparable microscopes.
  
-To create a reference data set that can be used to compare results from the microscope of any specific user against other comparable microscopes. +  ​- As an easy sample with minimal variability to work with DCIC on metadata organization and data upload.
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-  ​- +
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-As an easy sample with minimal variability to work with DCIC on metadata organization and data upload.+
  
 Over the duration of this project we will expand the number of contributors. We start with the Grunwald lab and DCIC (aim: develop the technology and infrastructure backbone), step one expansion will include a small set of optical technology development labs (aim: beta test the system), in step two we reach out to image production labs (aim: calling the afford) and in step three will address everyone using a microscope in the consortium. Over the duration of this project we will expand the number of contributors. We start with the Grunwald lab and DCIC (aim: develop the technology and infrastructure backbone), step one expansion will include a small set of optical technology development labs (aim: beta test the system), in step two we reach out to image production labs (aim: calling the afford) and in step three will address everyone using a microscope in the consortium.
  
-**IF YOU WANT TO CONTRIBUTE TODAY:** Everybody is welcome and invited to join this project at anytime. Please download the one-page protocol below (under "​Optical Calibration Documents"​) to get started. Contact me (david.grunwald@umassmed.edu) with questions and start taking bead stacks! The above steps are a lower bound: we will bother you to contribute at some point, we welcome you at any time!+**IF YOU WANT TO CONTRIBUTE TODAY:​** ​ Everybody is welcome and invited to join this project at anytime. Please download the one-page protocol below (under "​Optical Calibration Documents"​) to get started. Contact me (david.grunwald@umassmed.edu) with questions and start taking bead stacks! The above steps are a lower bound: we will bother you to contribute at some point, we welcome you at any time!
  
 ===== Optical Calibration - Definition and Resources ===== ===== Optical Calibration - Definition and Resources =====
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 ==== Optical Calibration Documents ==== ==== Optical Calibration Documents ====
  
-  *+  * [[https://​sites.google.com/​a/​4dnucleome.org/​4d-nucleome-wiki/​working-groups-list/​imaging-data-standards-wg/​microscope-calibration-project/​literature|LITERATURE]]
  
-[[https://​sites.google.com/​a/​4dnucleome.org/​4d-nucleome-wiki/​working-groups-list/​imaging-data-standards-wg/​microscope-calibration-project/​literature|LITERATURE]]+  * [[https://​sites.google.com/​a/​4dnucleome.org/​4d-nucleome-wiki/​working-groups-list/​imaging-data-standards-wg/​microscope-calibration-project/​optical-calibration-documents|Optical Calibration Documents]]
  
-  *+------------------------------------------------------------------------------------------
  
-[[https://​sites.google.com/​a/​4dnucleome.org/​4d-nucleome-wiki/​working-groups-list/​imaging-data-standards-wg/​microscope-calibration-project/​optical-calibration-documents|Optical Calibration Documents]]+{{medialist>​4dn:working_groups:​imaging_data_standards:​microscope_calibration_project:​}}
  
  
4dn/phase1/working_groups/imaging_data_standards/microscope_calibration_project.1550172905.txt.gz · Last modified: 2025/04/22 16:21 (external edit)