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4dn:phase1:working_groups:imaging_data_standards [2019/08/05 06:54] oh |
4dn:phase1:working_groups:imaging_data_standards [2025/04/22 16:21] (current) |
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| ====== Imaging Data Standards ====== | ====== Imaging Data Standards ====== | ||
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| + | <font 20px/inherit;;#e74c3c;;inherit>**The mailing list for the working group has been changed. Please use [[image@4dnucleome.org|]] from now on as the new mailing list address.**</font> | ||
| <font 20px/inherit;;inherit;;inherit>**IMAGING DATA STANDARDS: ESTABLISH STANDARDS FOR DATA FORMATS AND QUALITY CONTROL**</font> | <font 20px/inherit;;inherit;;inherit>**IMAGING DATA STANDARDS: ESTABLISH STANDARDS FOR DATA FORMATS AND QUALITY CONTROL**</font> | ||
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| <font 20px/inherit;;#e74c3c;;inherit>**1st Monday of every month, 12:00 pm PT (3:00 pm ET)**</font>\\ <font 20px/inherit;;inherit;;inherit>**Meeting Link:**</font>\\ [[https://4dnucleome.webex.com/4dnucleome/j.php?MTID=m033f3efc842cb3821d91cfbf9a125375|https://4dnucleome.webex.com/4dnucleome/j.php?MTID=m033f3efc842cb3821d91cfbf9a125375]]\\ Meeting number: 806 955 362\\ Meeting password: KvTsi3bA\\ Host key: 927479\\ Audio Connection: 1-415-655-0002 US TOLL\\ Access code: 806 955 362 | <font 20px/inherit;;#e74c3c;;inherit>**1st Monday of every month, 12:00 pm PT (3:00 pm ET)**</font>\\ <font 20px/inherit;;inherit;;inherit>**Meeting Link:**</font>\\ [[https://4dnucleome.webex.com/4dnucleome/j.php?MTID=m033f3efc842cb3821d91cfbf9a125375|https://4dnucleome.webex.com/4dnucleome/j.php?MTID=m033f3efc842cb3821d91cfbf9a125375]]\\ Meeting number: 806 955 362\\ Meeting password: KvTsi3bA\\ Host key: 927479\\ Audio Connection: 1-415-655-0002 US TOLL\\ Access code: 806 955 362 | ||
| - | <font 20px/inherit;;#2980b9;;inherit>**WEBEX EMERGENCY CONTACT INFORMATION: **</font> | + | <font 10px/inherit;;inherit;;inherit><font inherit/inherit;;rgb(41, 128, 185);;inherit>**WEBEX EMERGENCY CONTACT INFORMATION: **</font></font> |
| - | <font 20px/inherit;;#2980b9;;inherit>**KATE RIVERA**</font> | + | <font 10px/inherit;;inherit;;inherit><font inherit/inherit;;rgb(41, 128, 185);;inherit>**KATE RIVERA**</font></font> |
| - | <font 20px/inherit;;#2980b9;;inherit>**858-822-1626 (OFFICE)**</font> | + | <font 10px/inherit;;inherit;;inherit><font inherit/inherit;;rgb(41, 128, 185);;inherit>**858-822-1626 (OFFICE)**</font></font> |
| ===== Mission / Objectives ===== | ===== Mission / Objectives ===== | ||
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| ***SCOPE*** The 4D Nucleome Initiative investigators efforts will result in production of a variety of different types of datasets obtained by imaging the nuclei of single cells with multiple methodologies. An immediate objective of this working group is to identify the image data types; to develop a format for each and to keep a working list of the nature of these datasets. The group will discuss these topics and determine our course of action. We hope to determine how these data would be archived and retrieved by other 4DN groups, and the larger community of biomedical investigators. We will also work to implement, among the imaging groups of the 4D nucleome, practices that enable a suitable data sharing strategy – one that might resemble that of the genomics field (eg., data deposition prior to publication and shared upon publication). ***TASKS*** Our first task will be to define the list of datasets and data types that are being generated under 4DN support and assemble a small working group with sufficient expertise to work out the details required to properly annotate and archive all of them. After our meeting we will collect information about these datasets from the different groups. | ***SCOPE*** The 4D Nucleome Initiative investigators efforts will result in production of a variety of different types of datasets obtained by imaging the nuclei of single cells with multiple methodologies. An immediate objective of this working group is to identify the image data types; to develop a format for each and to keep a working list of the nature of these datasets. The group will discuss these topics and determine our course of action. We hope to determine how these data would be archived and retrieved by other 4DN groups, and the larger community of biomedical investigators. We will also work to implement, among the imaging groups of the 4D nucleome, practices that enable a suitable data sharing strategy – one that might resemble that of the genomics field (eg., data deposition prior to publication and shared upon publication). ***TASKS*** Our first task will be to define the list of datasets and data types that are being generated under 4DN support and assemble a small working group with sufficient expertise to work out the details required to properly annotate and archive all of them. After our meeting we will collect information about these datasets from the different groups. | ||
| - | |||
| - | * | ||
| - For each type of data we consider how to establish bridges that link to data types of the other working groups | - For each type of data we consider how to establish bridges that link to data types of the other working groups | ||
| Line 107: | Line 107: | ||
| - <font inherit/inherit;;#c0392b;;inherit>June 3, 2019 - CANCELLED</font> | - <font inherit/inherit;;#c0392b;;inherit>June 3, 2019 - CANCELLED</font> | ||
| - <font inherit/inherit;;#c0392b;;inherit>July 1, 2019 - agenda - CANCELLED</font> | - <font inherit/inherit;;#c0392b;;inherit>July 1, 2019 - agenda - CANCELLED</font> | ||
| - | - August 5, 2019 - [[https://drive.google.com/file/d/1kHfCc3TDALjCx_SKFrWM0Fo4XbcgDF_w/view?usp=sharing|agenda]] | + | - August 5, 2019 - [[https://drive.google.com/file/d/1kHfCc3TDALjCx_SKFrWM0Fo4XbcgDF_w/view?usp=sharing|agenda]], [[https://drive.google.com/open?id=1G100uAmf2WOsxx6iiFkK48OqgzDxtSig|recording]] |
| - | - September 2, 2019 - | + | - <font inherit/inherit;;#e74c3c;;inherit>September 9, 2019 - CANCELLED</font> |
| + | - October 7, 2019 - [[https://drive.google.com/open?id=1LFK1ZHPlqnjNNa2JjgDT0qWvguMLLT_U|recording]] | ||
| + | - November 4, 2019 - [[https://mail.google.com/mail/u/0?ui=2&ik=ed374f079d&attid=0.1&permmsgid=msg-f:1649308673741706204&th=16e38580175853dc&view=att&disp=inline|slides]], recording (Talk by Max Huisman (Grunwald lab) MetaMax Generation 3 – What you would like to know about your microscope that will stay hidden from meta data), [[https://drive.google.com/open?id=1MnAEOIC2PGfc_iXAod5FoVTYPKgQPjt5|recording]] | ||
| + | - <font inherit/inherit;;#e74c3c;;inherit>December 2, 2019 - CANCELLED</font> | ||
| + | - <font inherit/inherit;;#e74c3c;;inherit>January 6, 2020 - CANCELLED</font> | ||
| + | - February 3, 2020 - [[https://drive.google.com/open?id=1hjtw1kCrjhHDWCBno40_CSoPOi-cQjgF|recording]] | ||
| + | - <font inherit/inherit;;#e74c3c;;inherit>March 2, 2020 - CANCELLED</font> | ||
| + | - <font inherit/inherit;;#e74c3c;;inherit>April 6, 2020 - CANCELLED</font> | ||
| + | - May 4, 2020 - [[https://docs.google.com/document/d/1VXmH_ppUsoCsDmoUOx3bSbMg6IYn9ecu7OpeiWqW7Hc/edit?usp=sharing|Agenda]], [[https://drive.google.com/open?id=1LQNY2n2ptAw0GS09R6bQJqgGExsAnmaG|Recording link]] | ||
| + | - June 1, 2020 - [[https://docs.google.com/document/d/100EWw4AGdZ-UKJeLRroJV6MCzHx9Xm770O55p4XXbN4/edit?usp=sharing|Agenda]], [[https://drive.google.com/open?id=1TQ_Wzd7v1c-Ckb7DT2I4qWiStP0vpDol|Recording link]] | ||
| ===== 2017 Annual Meeting ===== | ===== 2017 Annual Meeting ===== | ||
| Line 181: | Line 190: | ||
| Insert spreadsheet members | Insert spreadsheet members | ||
| - | ===== Listserv ===== | + | ===== Mailing list ===== |
| - | The Listserv to use for communication in this Working Group is <4DN-IMAGE@LIST.NIH.GOV>. Emails sent there will go to everyone on the list. Replying to an email from the list will also send it to everyone in the list. [[https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/working-groups-list/imaging-data-standards-wg/Listserv Image .pdf?attredirects=0&d=1|Detailed instructions on how to interact with the Listserv system are available]] | + | The mailing list to use for communication in this Working Group is <image@4dnucleome.org>. Emails sent there will go to everyone on the list. Replying to an email from the list will also send it to everyone in the list. |
| ===== Calendar ===== | ===== Calendar ===== | ||
| {{url>https://calendar.google.com/calendar/embed?src=jo4jt0rd8934t7l1rfn8g2beu4%40group.calendar.google.com&ctz=America%2FLos_Angeles 800,400 noborder|4DN OMICS WG Calendar}} | {{url>https://calendar.google.com/calendar/embed?src=jo4jt0rd8934t7l1rfn8g2beu4%40group.calendar.google.com&ctz=America%2FLos_Angeles 800,400 noborder|4DN OMICS WG Calendar}} | ||
| + | |||
| + | ---- | ||
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| + | {{medialist>4dn:working_groups:imaging_data_standards:}} | ||
4dn/phase1/working_groups/imaging_data_standards.1565013287.txt.gz · Last modified: 2025/04/22 16:21 (external edit)