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--- 4dn:phase1:working_groups:jawg_meeting_archive [2020/05/14 20:01]
yanzm
+++ 4dn:phase1:working_groups:jawg_meeting_archive [2025/04/22 16:21] (current)
@@ Line 1: / Line 1: @@
-====== Meeting Archives ======
+====== Meeting Archives: 2019 ======
+  * December 19, 2019
+    * Meeting Agenda:
+      * Discussion of 4DN JAWG Marker Paper Outline: [[https://docs.google.com/document/d/1TNk17MMvh1iuMugyuU1QImmOYDwojt85f02XdJYw47M/edit|https://docs.google.com/document/d/1TNk17MMvh1iuMugyuU1QImmOYDwojt85f02XdJYw47M/edit]]
+      * We have created a Slack workspace for 4DN Joint Analysis. We will have more discussion on the marker paper there. You are welcome to join in using the invitation link: [[https://join.slack.com/t/4dnjawg/shared_invite/enQtODcyNzMwOTg4MDUyLWIxNmQwZjZmMDFkM2RjZmQ4ZjEyMzg4ZTEzZThkOWZkYmY0NmQ1MzJhMmMzYzkxZWFiMjY4OTYyOGIxZTM4M2Y|https://join.slack.com/t/4dnjawg/shared_invite/enQtODcyNzMwOTg4MDUyLWIxNmQwZjZmMDFkM2RjZmQ4ZjEyMzg4ZTEzZThkOWZkYmY0NmQ1MzJhMmMzYzkxZWFiMjY4OTYyOGIxZTM4M2Y]]
+    * Meeting recording
+  * December 12, 2019
+    * Meeting Agenda:
+      * Presentation by Xiaotao Wang (Yue Lab) and Andy Schroeder (DCIC): Sharing analysis products within the JAWG via the DCIC
+  * November 21, 2019
+    * Meeting Agenda:
+      * Presentation by Ruan Lab: Brief updates on 1) methods comparison; 2) human ChIA-Drop data
+      * Presentation by Dekker Lab: Hi-C protocol parameter sweep
+  * November 14, 2019
+    * Meeting Agenda:
+      * Presentation by Christoph Thieme / Teresa Szczepinska (Pombo, Plewczynski, Nicodemi Labs): GAM versus Hi-C comparisons mESC and H1 hESC
+      * Presentation by Jian Ma: Update on recent progress
+  * November 7, 2019
+    * Meeting Agenda:
+      * Discussion on manuscript coordination
+  * October 31, 2019
+    * Meeting Agenda:
+      * Presentation by Frank Alber: Comparative genome structure analysis (H1/HFF/GM12878)
+      * Annual meeting planning (agenda) [[https://docs.google.com/document/d/1dGMfu7VUUoMifpCQ19hCom5aVVe7UqWGXJ0i4YRPSFE/edit?ts=5db7287d#heading=h.oplwmnls7v3|https://docs.google.com/document/d/1dGMfu7VUUoMifpCQ19hCom5aVVe7UqWGXJ0i4YRPSFE/edit?ts=5db7287d#heading=h.oplwmnls7v3]]
+      * Go over planned data sets (listed here and here). [[https://docs.google.com/spreadsheets/d/1ONfcbvM1iP30vhStJuOemho039hMA0juFvjEU92zse4/edit#gid=0|https://docs.google.com/spreadsheets/d/1ONfcbvM1iP30vhStJuOemho039hMA0juFvjEU92zse4/edit#gid=0]]
+      * Google Doc for sharing analysis results. [[https://docs.google.com/document/d/1-0oWZsmXhEaD20WJNgIt6cgwIi-rhZVCiBDYqxVXQXE/edit?usp=sharing|https://docs.google.com/document/d/1-0oWZsmXhEaD20WJNgIt6cgwIi-rhZVCiBDYqxVXQXE/edit?usp=sharing]]
+    * Minutes:
+      * Perhaps have a plenary session for JAWG, visualization and imaging.
+      * The imaging demo may be open the entire time, not just during the breakout.
+      * Action items:
+      * [Burak] Contact David Grunewald to find out more.
+      * [Feng] Continue scheduling discussion via email.
+      * [Bill] Email to find out what data is on the way. Put a deadline.
+      * [Bill] Schedule presentations for the next three meetings. Frank, Job, Feng (cross-platform comparisons), Jian. Make sure we get important discussions about manuscripts into the agenda for upcoming calls.
+  * October 3, 2019
+    * Meeting Agenda:
+      * 1. Presentation by Jennifer E. Phillips-Cremins
+      * 2. Discussion of Jie Liu's associate member application ([[https://drive.google.com/file/d/0B1Uh14Y8H75dVUN4YS1XOU1BaVR5Q0syN3JvMlB2THdDMmJV/view|https://drive.google.com/file/d/0B1Uh14Y8H75dVUN4YS1XOU1BaVR5Q0syN3JvMlB2THdDMmJV/view]])
+      * 3. Outreach session (chaired by Peter Fraser)
+  * September 26, 2019
+    * Meeting Agenda:
+      * Presentation by Dr. Jie Liu for 4DN association member application: Computational methods for high resolution chromatin organization ([[https://drive.google.com/file/d/1VYwFZ-QQ8fHpOo7Iqv5mZCMEm_nb-eLL/view|https://drive.google.com/file/d/1VYwFZ-QQ8fHpOo7Iqv5mZCMEm_nb-eLL/view]])
+  * September 5, 2019
+    * Meeting Agenda:
+      * Presentation by Kyle Xiong (Ma Lab): SNIPER - call subcompartments by imputing inter-chromosomal chromatin interactions
+      * Discussion of authorship and data release policy
+      * Discussion of publication of individual datasets by data producers and the use of individual datasets generated by others in the group in publications.
+  * August 15, 2019
+    * Meeting Agenda:
+      * Presentation by Tarik Salameh (Yue Lab): A supervised learning framework for chromatin loop detection in genome-wide contact maps
+      * Outreach discussion (Sheng Zhong)
+        * Updates of recent outreach activities.
+  * July 25, 2019
+    * Meeting Agenda:
+      * Presentation by Daniel Capurso (Ruan Lab): Comparative analysis of methods for protein-enriched chromatin interactions
+  * July 11, 2019
+    * Meeting Agenda:
+      * Presentation by Liguo Zhang (Belmont Lab): Development and Application of TSA-Seq 2.0 to Measuring 3D Genome Organization Relative to Nuclear Compartments
+      * Outreach discussion (Lucie Hebert):
+        * Discuss the 4DN promotional material and the next conferences related to 4DN
+  * Jun 20, 2019
+    * Meeting Agenda:
+      * Discussion on how to perform the joint analysis as a group.
+      * Proposal to assemble an analysis team with members from interested centers and labs.
+  * Jun 6, 2019
+    * Meeting Agenda:
+      * Presentation by Dr. Thomas C. Bishop (Louisiana Tech University): G-Dash: A Genome Dashboard Integrating Modeling and Informatics
+    * Recording:
+  * May 30, 2019
+    * Meeting Agenda:
+      * Presentation by Nils Krietenstein (Rando, Mirny, Dekker Labs): Micro-C vs Hi-C
+    * Recording:
+  * May 23, 2019
+    * Meeting Agenda:
+      * Presentation by DCIC: Pipelines, visualization, sites supporting joint papers
+  * Recording:
+  * May 2, 2019
+    * Meeting Agenda:
+      * Discussion on handling co-authorships across JAWG papers
+  * Recording:
+  * Apr 18, 2019
+    * Meeting Agenda:
+      * Presentation by Xiaotao Wang (Yue Lab): cross-platform comparisonsOutreach
+  * Recording:
+  * Apr 4, 2019
+    * Meeting Agenda:
+      * Presentation by Sheng Zhong: Brief update on analysis of inter-chromosomal interactions
+      * Outreach
+      * Feedback of the Keystone meeting of 2 weeks ago
+      * Kate Rivera (4DN Program Coordinator) has drafted a version of a 4DN brochure. Please have a look, we will go over it and discuss suggestions/modifications.
+      * Retrospective of the last meeting's actions items and their implementation. (minutes of last outreach discussion)
+    * Recording:
+  * Mar 28, 2019
+    * Meeting Agenda:
+      * Presentation by Alber/Ma Labs: Structural models vs SPIN
+      * Presentation by Bill/Erez Labs: ENCODE to present their 4D Nucleome related work
+    * Recording:
+  * Mar 14, 2019
+    * Meeting Agenda:
+      * Presentation by Xiaotao Wang (Yue Lab): a short update on the cross-platform comparison.
+      * Presentation by Peiyao Zhao (Gilbert Lab): High Res Repli-seq (H1, H9, HCT116, F121-9 ESC and NPC)
+    * Recording: [[https://4dnucleome.webex.com/recordingservice/sites/4dnucleome/recording/playback/a9ce0ae1b7c24160a4fc49a5fe0b876e|https://4dnucleome.webex.com/recordingservice/sites/4dnucleome/recording/playback/a9ce0ae1b7c24160a4fc49a5fe0b876e]]
+  * Mar 7, 2019
+    * Meeting Agenda:
+      * Presentation by Tarik Salameh (Yue Lab): PIKACHU: A supervised machine learning method to identify chromatin loops from genome-wide interaction data
+    * Outreach Discussion (Peter Fraser):
+      * Plans for intensifying Outreach activities: [[https://docs.google.com/document/d/174APgE9ppCWaR0H9OLUjuX7Z0gwx9dL3dsCKzRnaMRQ/edit|https://docs.google.com/document/d/174APgE9ppCWaR0H9OLUjuX7Z0gwx9dL3dsCKzRnaMRQ/edit]]
+      * Present the Outreach activities google sheet: [[https://docs.google.com/spreadsheets/d/1b_QkvoI86FSakGteLjYC81Q0hQ92RR_uI8jYN6Rx6mU/edit#gid=1386834576|https://docs.google.com/spreadsheets/d/1b_QkvoI86FSakGteLjYC81Q0hQ92RR_uI8jYN6Rx6mU/edit#gid=1386834576]]
+    * Recording: [[https://4dnucleome.webex.com/recordingservice/sites/4dnucleome/recording/playback/ed1f5e35f16d40f6815d71bac4375a27|https://4dnucleome.webex.com/recordingservice/sites/4dnucleome/recording/playback/ed1f5e35f16d40f6815d71bac4375a27]]
+  * Feb 28, 2019
+    * Meeting Agenda:
+      * Presentation by Rando/Mirny/Dekker labs: Micro-C vs Hi-C - long presentation
+  * Feb 21, 2019
+    * Meeting Agenda:
+      * Presentation by Ruan/Aiden/Dekker/Ren/Ma labs: pull-down vs non-pulldown 3C methods comparisons
+      * Presentation by Guttman lab: ligation vs non-ligation assays (HiC vs SPRITE/GAM)
+    * Recording:
+  * Feb 14, 2019
+    * Meeting Agenda:
+      * Presentation by Zhong/Ren labs: RNA-chromatin interactions
+      * Presentation by Pombo/Nicodemi/Ren/Hu labs: Allelic GAM/Hi-C/PLAC-seq + other data (cell line F123)
+    * Recording: [[https://4dnucleome.webex.com/recordingservice/sites/4dnucleome/recording/playback/acc4fe33ac134a7bbe06cece65953225|https://4dnucleome.webex.com/recordingservice/sites/4dnucleome/recording/playback/acc4fe33ac134a7bbe06cece65953225]]
+  * Feb 7, 2019
+    * Meeting Agenda:
+      * Presentation by Alber / Data producing labs: Structural modeling
+      * Presentation by Ren/Hu.Pombo/Nicodemi: PLAC-seq - Hi-C - GAM
+    * Recording: [[https://4dnucleome.webex.com/4dnucleome/ldr.php?RCID=9f659cc9563efe122e5ed34b0ccfb263|https://4dnucleome.webex.com/4dnucleome/ldr.php?RCID=9f659cc9563efe122e5ed34b0ccfb263]]
+    * Notes:
+      * Burak: No JAWG DCIC data update. Encouraged upcoming JAWG presentations to start with a slide on data availability
+      * Sheng: Gave an outreach activities update. Encouraged conference organizers/attendees to update the worksheet ‘4DN workshops and posters
+      * David Gilbert: Gave an anecdote about a scientific meeting that discouraged a 4DN-specific talk. But urged everyone to do their best to put 4DN affiliation in presentation/posters.
+      * Jan 31, 2019
+        * Meeting Agenda:
+      * Updates of nuclear speckle project: Belmont/Zhong/Guttman
+      * Updates of SPIN states project: Ma/Belmont/van Steensel/Gilbert
+  * Jan 24, 2019
+    * Meeting Agenda:
+      * DCIC/Burak Alver to give an update on processed data available for JA for the various groups to use ChIP status
+      * Discussion of the planned presentation schedule: [[https://docs.google.com/spreadsheets/d/1bpJR_UnFE67P_dqrj0gbPequ_tx0WPmEMTl6hKbgGz0/edit#gid=0|https://docs.google.com/spreadsheets/d/1bpJR_UnFE67P_dqrj0gbPequ_tx0WPmEMTl6hKbgGz0/edit#gid=0]]
+    * Recording: [[https://4dnucleome.webex.com/recordingservice/sites/4dnucleome/recording/playback/26200c74075d4df5a6adbf79fff3ecdb|https://4dnucleome.webex.com/recordingservice/sites/4dnucleome/recording/playback/26200c74075d4df5a6adbf79fff3ecdb]]
+  * Jan 17, 2019
+    * Meeting Agenda:
+      * Continue discussion of plans for papers. Discussion on how to coordinate and report updates of ongoing analyses towards these papers to the JAWG/DAWG groups
+      * Update on ENCODE data being generated by ENCODE for 4DN Tier 1 cells (Job and Feng).
+      * Coordination between JAWG/DAWG with the larger outreach strategy discussed at this weeks 4DN Steering Committee call.
+    * Recording: [[https://www.google.com/url?q=https://4dnucleome.webex.com/recordingservice/sites/4dnucleome/recording/playback/e30f7269314a4cecacb51b92122ee0f1&sa=D&sntz=1&usg=AFQjCNFPnomIc80Qzke-jQfLnoxzpvgydA|https://4dnucleome.webex.com/recordingservice/sites/4dnucleome/recording/playback/e30f7269314a4cecacb51b92122ee0f1]]
+  * Jan 10, 2019
+    * Meeting Agenda:
+      * Planning of manuscripts. Feng has created a google doc for listing proposed manuscripts. Please add your planned manuscript before the call on Jan 10. We will discuss it at the meeting. Here is the link to the google doc: [[https://docs.google.com/document/d/1Riv1WeOyHWDAkZn874h87ykHqz0ogotNuaC-cryLtDU/edit|https://docs.google.com/document/d/1Riv1WeOyHWDAkZn874h87ykHqz0ogotNuaC-cryLtDU/edit]]
+    * Recording: [[https://www.google.com/url?q=https://4dnucleome.webex.com/recordingservice/sites/4dnucleome/recording/playback/fe972358f0fb4726ab57a2bc52c99563&sa=D&sntz=1&usg=AFQjCNHKmwxwOLkNY8nqFflsigVbGbZV3A|https://4dnucleome.webex.com/recordingservice/sites/4dnucleome/recording/playback/fe972358f0fb4726ab57a2bc52c99563]]
+  * Jan 3, 2019
+    * Meeting Agenda:
+      * Feedback and discussion of the annual meeting
+      * Discussion of next steps
+      * RFI from groups about publication plans on Joint Analysis projects
+    * Recording: [[https://www.google.com/url?q=https://4dnucleome.webex.com/recordingservice/sites/4dnucleome/recording/playback/aa9f444dd0d44e36aa93cab61b3811f2&sa=D&sntz=1&usg=AFQjCNEMPYo9GlzQ24rKtEUOi1Zsw_myYA|https://4dnucleome.webex.com/recordingservice/sites/4dnucleome/recording/playback/aa9f444dd0d44e36aa93cab61b3811f2]]
+    *
+======
+====== Meeting Archives: 2017 - 2018 ======
   * **May 4, 2017 - Monthly Call 1**
@@ Line 171: / Line 331: @@
         * 2. Discussion about the annual meeting presentations [[https://docs.google.com/document/d/1Bn2EWLV81ebqt8A8NYOTY8NtCe6QEKpkGH2pIEDrSy4/edit|https://docs.google.com/document/d/1Bn2EWLV81ebqt8A8NYOTY8NtCe6QEKpkGH2pIEDrSy4/edit]]
       * Recording: [[https://www.google.com/url?q=https://4dnucleome.webex.com/recordingservice/sites/4dnucleome/recording/playback/ea85a7b1b28b49b091bc7a498547c855&sa=D&sntz=1&usg=AFQjCNGdti0aKqXQc0yCPGFxuXx1hiMNKg|https://4dnucleome.webex.com/recordingservice/sites/4dnucleome/recording/playback/ea85a7b1b28b49b091bc7a498547c855]]
-  *
-December 19, 2019
-      *
-Meeting Agenda:
-        *
-Discussion of 4DN JAWG Marker Paper Outline: [[https://docs.google.com/document/d/1TNk17MMvh1iuMugyuU1QImmOYDwojt85f02XdJYw47M/edit|https://docs.google.com/document/d/1TNk17MMvh1iuMugyuU1QImmOYDwojt85f02XdJYw47M/edit]]
-        *
-We have created a Slack workspace for 4DN Joint Analysis. We will have more discussion on the marker paper there. You are welcome to join in using the invitation link: [[https://join.slack.com/t/4dnjawg/shared_invite/enQtODcyNzMwOTg4MDUyLWIxNmQwZjZmMDFkM2RjZmQ4ZjEyMzg4ZTEzZThkOWZkYmY0NmQ1MzJhMmMzYzkxZWFiMjY4OTYyOGIxZTM4M2Y|https://join.slack.com/t/4dnjawg/shared_invite/enQtODcyNzMwOTg4MDUyLWIxNmQwZjZmMDFkM2RjZmQ4ZjEyMzg4ZTEzZThkOWZkYmY0NmQ1MzJhMmMzYzkxZWFiMjY4OTYyOGIxZTM4M2Y]]
-      *
-Meeting recording
-        *
-  *
-December 12, 2019
-      *
-Meeting Agenda:
-        *
-Presentation by Xiaotao Wang (Yue Lab) and Andy Schroeder (DCIC): Sharing analysis products within the JAWG via the DCIC
-  *
-November 21, 2019
-      *
-Meeting Agenda:
-        *
-Presentation by Ruan Lab: Brief updates on 1) methods comparison; 2) human ChIA-Drop data
-        *
-Presentation by Dekker Lab: Hi-C protocol parameter sweep
-  *
-November 14, 2019
-      *
-Meeting Agenda:
-        *
-Presentation by Christoph Thieme / Teresa Szczepinska (Pombo, Plewczynski, Nicodemi Labs): GAM versus Hi-C comparisons mESC and H1 hESC
-        *
-Presentation by Jian Ma: Update on recent progress
-  *
-November 7, 2019
-      *
-Meeting Agenda:
-        *
-Discussion on manuscript coordination
-  *
-October 31, 2019
-      *
-Meeting Agenda:
-        *
-Presentation by Frank Alber: Comparative genome structure analysis (H1/HFF/GM12878)
-        *
-Annual meeting planning (agenda) [[https://docs.google.com/document/d/1dGMfu7VUUoMifpCQ19hCom5aVVe7UqWGXJ0i4YRPSFE/edit?ts=5db7287d#heading=h.oplwmnls7v3|https://docs.google.com/document/d/1dGMfu7VUUoMifpCQ19hCom5aVVe7UqWGXJ0i4YRPSFE/edit?ts=5db7287d#heading=h.oplwmnls7v3]]
-        *
-Go over planned data sets (listed here and here). [[https://docs.google.com/spreadsheets/d/1ONfcbvM1iP30vhStJuOemho039hMA0juFvjEU92zse4/edit#gid=0|https://docs.google.com/spreadsheets/d/1ONfcbvM1iP30vhStJuOemho039hMA0juFvjEU92zse4/edit#gid=0]]
-        *
-Google Doc for sharing analysis results. [[https://docs.google.com/document/d/1-0oWZsmXhEaD20WJNgIt6cgwIi-rhZVCiBDYqxVXQXE/edit?usp=sharing|https://docs.google.com/document/d/1-0oWZsmXhEaD20WJNgIt6cgwIi-rhZVCiBDYqxVXQXE/edit?usp=sharing]]
-      *
-Minutes:
-        *
-Perhaps have a plenary session for JAWG, visualization and imaging.
-        *
-The imaging demo may be open the entire time, not just during the breakout.
-      *
-Action items:
-        *
-[Burak] Contact David Grunewald to find out more.
-        *
-[Feng] Continue scheduling discussion via email.
-        *
-[Bill] Email to find out what data is on the way. Put a deadline.
-        *
-[Bill] Schedule presentations for the next three meetings. Frank, Job, Feng (cross-platform comparisons), Jian. Make sure we get important discussions about manuscripts into the agenda for upcoming calls.
-  *
-October 3, 2019
-      *
-Meeting Agenda:
-        *
-. Presentation by Jennifer E. Phillips-Cremins
-        *
-. Discussion of Jie Liu's associate member application ([[https://drive.google.com/file/d/0B1Uh14Y8H75dVUN4YS1XOU1BaVR5Q0syN3JvMlB2THdDMmJV/view|https://drive.google.com/file/d/0B1Uh14Y8H75dVUN4YS1XOU1BaVR5Q0syN3JvMlB2THdDMmJV/view]])
-        *
-. Outreach session (chaired by Peter Fraser)
-  *
-September 26, 2019
-      *
-Meeting Agenda:
-        *
-Presentation by Dr. Jie Liu for 4DN association member application: Computational methods for high resolution chromatin organization ([[https://drive.google.com/file/d/1VYwFZ-QQ8fHpOo7Iqv5mZCMEm_nb-eLL/view|https://drive.google.com/file/d/1VYwFZ-QQ8fHpOo7Iqv5mZCMEm_nb-eLL/view]])
-  *
-September 5, 2019
-      *
-Meeting Agenda:
-        *
-Presentation by Kyle Xiong (Ma Lab): SNIPER - call subcompartments by imputing inter-chromosomal chromatin interactions
-        *
-Discussion of authorship and data release policy
-        *
-Discussion of publication of individual datasets by data producers and the use of individual datasets generated by others in the group in publications.
-  *
-August 15, 2019
-      *
-Meeting Agenda:
-        *
-Presentation by Tarik Salameh (Yue Lab): A supervised learning framework for chromatin loop detection in genome-wide contact maps
-        *
-Outreach discussion (Sheng Zhong)
-          *
-Updates of recent outreach activities.
-  *
-July 25, 2019
-      *
-Meeting Agenda:
-        *
-Presentation by Daniel Capurso (Ruan Lab): Comparative analysis of methods for protein-enriched chromatin interactions
-  *
-July 11, 2019
-      *
-Meeting Agenda:
-        *
-Presentation by Liguo Zhang (Belmont Lab): Development and Application of TSA-Seq 2.0 to Measuring 3D Genome Organization Relative to Nuclear Compartments
-        *
-Outreach discussion (Lucie Hebert):
-          *
-Discuss the 4DN promotional material and the next conferences related to 4DN
-  *
-Jun 20, 2019
-      *
-Meeting Agenda:
-        *
-Discussion on how to perform the joint analysis as a group.
-        *
-Proposal to assemble an analysis team with members from interested centers and labs.
-  *
-Jun 6, 2019
-      *
-Meeting Agenda:
-        *
-Presentation by Dr. Thomas C. Bishop (Louisiana Tech University): G-Dash: A Genome Dashboard Integrating Modeling and Informatics
-      *
-Recording:
-  *
-May 30, 2019
-      *
-Meeting Agenda:
-        *
-Presentation by Nils Krietenstein (Rando, Mirny, Dekker Labs): Micro-C vs Hi-C
-      *
-Recording:
-  *
-May 23, 2019
-      *
-Meeting Agenda:
-        *
-Presentation by DCIC: Pipelines, visualization, sites supporting joint papers
-      *
-Recording:
-  *
-May 2, 2019
-      *
-Meeting Agenda:
-        *
-Discussion on handling co-authorships across JAWG papers
-      *
-Recording:
-  *
-Apr 18, 2019
-      *
-Meeting Agenda:
-        *
-Presentation by Xiaotao Wang (Yue Lab): cross-platform comparisonsOutreach
-      *
-Recording:
-  *
-Apr 4, 2019
-      *
-Meeting Agenda:
-        *
-Presentation by Sheng Zhong: Brief update on analysis of inter-chromosomal interactions
-        *
-Outreach
-          *
-Feedback of the Keystone meeting of 2 weeks ago
-          *
-Kate Rivera (4DN Program Coordinator) has drafted a version of a 4DN brochure. Please have a look, we will go over it and discuss suggestions/modifications.
-          *
-Retrospective of the last meeting's actions items and their implementation. (minutes of last outreach discussion)
-      *
-Recording:
-  *
-Mar 28, 2019
-      *
-Meeting Agenda:
-        *
-Presentation by Alber/Ma Labs: Structural models vs SPIN
-        *
-Presentation by Bill/Erez Labs: ENCODE to present their 4D Nucleome related work
-      *
-Recording:
-  *
-Mar 14, 2019
-      *
-Meeting Agenda:
-        *
-Presentation by Xiaotao Wang (Yue Lab): a short update on the cross-platform comparison.
-        *
-Presentation by Peiyao Zhao (Gilbert Lab): High Res Repli-seq (H1, H9, HCT116, F121-9 ESC and NPC)
-      *
-Recording: [[https://4dnucleome.webex.com/recordingservice/sites/4dnucleome/recording/playback/a9ce0ae1b7c24160a4fc49a5fe0b876e|https://4dnucleome.webex.com/recordingservice/sites/4dnucleome/recording/playback/a9ce0ae1b7c24160a4fc49a5fe0b876e]]
-  *
-Mar 7, 2019
-      *
-Meeting Agenda:
-        *
-Presentation by Tarik Salameh (Yue Lab): PIKACHU: A supervised machine learning method to identify chromatin loops from genome-wide interaction data
-        *
-Outreach Discussion (Peter Fraser):
-          *
-Plans for intensifying Outreach activities: [[https://docs.google.com/document/d/174APgE9ppCWaR0H9OLUjuX7Z0gwx9dL3dsCKzRnaMRQ/edit|https://docs.google.com/document/d/174APgE9ppCWaR0H9OLUjuX7Z0gwx9dL3dsCKzRnaMRQ/edit]]
-          *
-Present the Outreach activities google sheet: [[https://docs.google.com/spreadsheets/d/1b_QkvoI86FSakGteLjYC81Q0hQ92RR_uI8jYN6Rx6mU/edit#gid=1386834576|https://docs.google.com/spreadsheets/d/1b_QkvoI86FSakGteLjYC81Q0hQ92RR_uI8jYN6Rx6mU/edit#gid=1386834576]]
-      *
-Recording: [[https://4dnucleome.webex.com/recordingservice/sites/4dnucleome/recording/playback/ed1f5e35f16d40f6815d71bac4375a27|https://4dnucleome.webex.com/recordingservice/sites/4dnucleome/recording/playback/ed1f5e35f16d40f6815d71bac4375a27]]
-  *
-Feb 28, 2019
-      *
-Meeting Agenda:
-        *
-Presentation by Rando/Mirny/Dekker labs: Micro-C vs Hi-C - long presentation
-  *
-Feb 21, 2019
-      *
-Meeting Agenda:
-        *
-Presentation by Ruan/Aiden/Dekker/Ren/Ma labs: pull-down vs non-pulldown 3C methods comparisons
-        *
-Presentation by Guttman lab: ligation vs non-ligation assays (HiC vs SPRITE/GAM)
-      *
-Recording:
-  *
-Feb 14, 2019
-      *
-Meeting Agenda:
-        *
-Presentation by Zhong/Ren labs: RNA-chromatin interactions
-        *
-Presentation by Pombo/Nicodemi/Ren/Hu labs: Allelic GAM/Hi-C/PLAC-seq + other data (cell line F123)
-      *
-Recording: [[https://4dnucleome.webex.com/recordingservice/sites/4dnucleome/recording/playback/acc4fe33ac134a7bbe06cece65953225|https://4dnucleome.webex.com/recordingservice/sites/4dnucleome/recording/playback/acc4fe33ac134a7bbe06cece65953225]]
-  *
-Feb 7, 2019
-      *
-Meeting Agenda:
-        *
-Presentation by Alber / Data producing labs: Structural modeling
-        *
-Presentation by Ren/Hu.Pombo/Nicodemi: PLAC-seq - Hi-C - GAM
-      *
-Recording: [[https://4dnucleome.webex.com/4dnucleome/ldr.php?RCID=9f659cc9563efe122e5ed34b0ccfb263|https://4dnucleome.webex.com/4dnucleome/ldr.php?RCID=9f659cc9563efe122e5ed34b0ccfb263]]
-      *
-Notes:
-        *
-Burak: No JAWG DCIC data update. Encouraged upcoming JAWG presentations to start with a slide on data availability
-        *
-Sheng: Gave an outreach activities update. Encouraged conference organizers/attendees to update the worksheet ‘4DN workshops and posters
-        *
-David Gilbert: Gave an anecdote about a scientific meeting that discouraged a 4DN-specific talk. But urged everyone to do their best to put 4DN affiliation in presentation/posters.
-  *
-Jan 31, 2019
-      *
-Meeting Agenda:
-        *
-Updates of nuclear speckle project: Belmont/Zhong/Guttman
-        *
-Updates of SPIN states project: Ma/Belmont/van Steensel/Gilbert
-  *
-Jan 24, 2019
-      *
-Meeting Agenda:
-        *
-DCIC/Burak Alver to give an update on processed data available for JA for the various groups to use ChIP status
-        *
-Discussion of the planned presentation schedule: [[https://docs.google.com/spreadsheets/d/1bpJR_UnFE67P_dqrj0gbPequ_tx0WPmEMTl6hKbgGz0/edit#gid=0|https://docs.google.com/spreadsheets/d/1bpJR_UnFE67P_dqrj0gbPequ_tx0WPmEMTl6hKbgGz0/edit#gid=0]]
-      *
-Recording: [[https://4dnucleome.webex.com/recordingservice/sites/4dnucleome/recording/playback/26200c74075d4df5a6adbf79fff3ecdb|https://4dnucleome.webex.com/recordingservice/sites/4dnucleome/recording/playback/26200c74075d4df5a6adbf79fff3ecdb]]
-  *
-Jan 17, 2019
-      *
-Meeting Agenda:
-        *
-Continue discussion of plans for papers. Discussion on how to coordinate and report updates of ongoing analyses towards these papers to the JAWG/DAWG groups
-        *
-Update on ENCODE data being generated by ENCODE for 4DN Tier 1 cells (Job and Feng).
-        *
-Coordination between JAWG/DAWG with the larger outreach strategy discussed at this weeks 4DN Steering Committee call.
-      *
-Recording: [[https://www.google.com/url?q=https://4dnucleome.webex.com/recordingservice/sites/4dnucleome/recording/playback/e30f7269314a4cecacb51b92122ee0f1&sa=D&sntz=1&usg=AFQjCNFPnomIc80Qzke-jQfLnoxzpvgydA|https://4dnucleome.webex.com/recordingservice/sites/4dnucleome/recording/playback/e30f7269314a4cecacb51b92122ee0f1]]
-  *
-Jan 10, 2019
-      *
-Meeting Agenda:
-        *
-Planning of manuscripts. Feng has created a google doc for listing proposed manuscripts. Please add your planned manuscript before the call on Jan 10. We will discuss it at the meeting. Here is the link to the google doc: [[https://docs.google.com/document/d/1Riv1WeOyHWDAkZn874h87ykHqz0ogotNuaC-cryLtDU/edit|https://docs.google.com/document/d/1Riv1WeOyHWDAkZn874h87ykHqz0ogotNuaC-cryLtDU/edit]]
-      *
-Recording: [[https://www.google.com/url?q=https://4dnucleome.webex.com/recordingservice/sites/4dnucleome/recording/playback/fe972358f0fb4726ab57a2bc52c99563&sa=D&sntz=1&usg=AFQjCNHKmwxwOLkNY8nqFflsigVbGbZV3A|https://4dnucleome.webex.com/recordingservice/sites/4dnucleome/recording/playback/fe972358f0fb4726ab57a2bc52c99563]]
-  *
-Jan 3, 2019
-      *
-Meeting Agenda:
-        *
-Feedback and discussion of the annual meeting
-        *
-Discussion of next steps
-        *
-RFI from groups about publication plans on Joint Analysis projects
-      *
-Recording: [[https://www.google.com/url?q=https://4dnucleome.webex.com/recordingservice/sites/4dnucleome/recording/playback/aa9f444dd0d44e36aa93cab61b3811f2&sa=D&sntz=1&usg=AFQjCNEMPYo9GlzQ24rKtEUOi1Zsw_myYA|https://4dnucleome.webex.com/recordingservice/sites/4dnucleome/recording/playback/aa9f444dd0d44e36aa93cab61b3811f2]]

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