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--- 4dn:phase1:working_groups:joint_4d_nucleome_analysis [2020/11/12 13:19]
yanzm [JA presentations in 2020:]
+++ 4dn:phase1:working_groups:joint_4d_nucleome_analysis [2025/04/22 16:21] (current)
@@ Line 13: / Line 13: @@
   * [[https://docs.google.com/spreadsheets/d/1ONfcbvM1iP30vhStJuOemho039hMA0juFvjEU92zse4/edit#gid=0|Data generation plan (Google sheets)]]
-  * **<font inherit/inherit;;#2980b9;;inherit><font inherit/inherit;;inherit;;#ffff33>[[https://wiki.4dnucleome.org/4dn:working_groups:jawg_sandbox|Data analysis sandbox, with links to analysis products]]</font></font>**
+  * **<font inherit/inherit;;#2980b9;;inherit><font inherit/inherit;;inherit;;#ffff33>[[https://wiki.4dnucleome.org/4dn:phase2:working_groups:jawg_sandbox?s[]=sandbox|Data analysis sandbox, with links to analysis products]]</font></font>**
   * 2019 Dec:**<font inherit/inherit;;inherit;;#ffff33><font inherit/inherit;;#e74c3c;;inherit>[[https://docs.google.com/document/d/1TNk17MMvh1iuMugyuU1QImmOYDwojt85f02XdJYw47M/edit|Joint Analysis Marker Paper Outline]]</font></font>**
   * 2019 May: **<font inherit/inherit;;inherit;;#ffff33><font inherit/inherit;;#e74c3c;;inherit>[[https://docs.google.com/spreadsheets/d/1HqXeIBTcOnb-dVgqgRzpQcdi9A9bf3jITx2K5vwvUTg/edit#gid=0|Joint Analysis paper plan tracking table]]</font></font>**
@@ Line 240: / Line 239: @@
 |10/15/2020|Kai Sandvold Beckwith|Ellenberg Lab|A method to resolve the nanoscale fold of chromosomal DNA below five kilobase resolution in single human cells under near-native conditions|~~CKG_TABLE_NBSP~~|  ~~CKG_TABLE_NBSP~~  |~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|
 |10/29/2020|Andrew D Stephens|Stephens Lab|HP1α is a chromatin crosslinker that controls nuclear and mitotic chromosome mechanics|~~TABLE_CELL_WRAP_START~~<WRAP>
 [[https://drive.google.com/file/d/1ZyrbGxJaC5I7LAO6lc4urU6DQx-qQ_x1/view?usp=sharing|Link]]
 </WRAP>~~TABLE_CELL_WRAP_STOP~~|  ~~CKG_TABLE_NBSP~~  |~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|
 |10/29/2020|Jennifer E. Phillips-Cremins|Phillips-Cremins Lab|Dissecting the genome’s structure function-relationship during replication|~~CKG_TABLE_NBSP~~|  ~~CKG_TABLE_NBSP~~  |~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|
-|11/12/2020|Caterina Strambio De Castillia|Strambio De Castillia Lab|Micro-Meta App, an interactive tool for the collection of microscopy metadata based on the 4DN-OME tiered system of guidelines|~~CKG_TABLE_NBSP~~|  ~~CKG_TABLE_NBSP~~  |~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|
+|11/12/2020|Caterina Strambio De Castillia|Strambio De Castillia Lab|Micro-Meta App, an interactive tool for the collection of microscopy metadata based on the 4DN-OME tiered system of guidelines|~~TABLE_CELL_WRAP_START~~<WRAP>
+[[https://drive.google.com/file/d/1_iOqrOImFZIIZ7zGrUTqp2m4gzAWQRGh/view?usp=sharing|Link]]
+</WRAP>~~TABLE_CELL_WRAP_STOP~~|  ~~TABLE_CELL_WRAP_START~~<WRAP>
+[[https://drive.google.com/file/d/1_f3N3oYryKPtgSLWgUmTKf8ZZ17bg-07/view?usp=sharing|Link to recording]]
+</WRAP>~~TABLE_CELL_WRAP_STOP~~  |~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|
 |11/12/2020|Kaustav Sengupta and~~CKG_TABLE_NBSP~~Dariusz Plewczynski|Plewczynski Lab|Phase condensation by percolation model with the single chromatin loop resolution|~~CKG_TABLE_NBSP~~|  ~~CKG_TABLE_NBSP~~  |~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|
 |~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|  ~~CKG_TABLE_NBSP~~  |~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|
@@ Line 253: / Line 258: @@
 ===== Meeting Archives =====
+  * November 12, 2020
+    * Meeting Agenda:
+      * Presentation by Dr. Caterina Strambio De Castillia: Micro-Meta App, an interactive tool for the collection of microscopy metadata based on the 4DN-OME tiered system of guidelines
+      * Presentation by Drs. Kaustav Sengupta and Dariusz Plewczynski: Phase condensation by percolation model with the single chromatin loop resolution
+  * October 29, 2020
+    * Meeting Agenda:
+      * Presentation by Dr. Andrew D Stephens: HP1α is a chromatin crosslinker that controls nuclear and mitotic chromosome mechanics.
+      * Presentation by Dr. Jennifer E. Phillips-Cremins: Dissecting the genome’s structure function-relationship during replication
+  * October 15, 2020
+    * Meeting Agenda:
+      * Presentation by Dr. Kai Sandvold Beckwith (Ellenberg Lab): A method to resolve the nanoscale fold of chromosomal DNA below five kilobase resolution in single human cells under near-native conditions
+  * October 1, 2020
+    * Meeting Agenda:
+      * Presentation by Dr. Andrew Belmont: Integrative genome-wide analysis of nuclear compartmentalization in human cells
+      * Presentation by Dr. David Grunwald: Meta-max: an easy-to-use calibration tool to maximize the value of fluorescence microscopy data
+  * September 17, 2020
+    * Meeting Agenda:
+      * Presentation by Dr. Minji Kim (Ruan Lab): Cohesin-mediated chromatin folding dynamics and transcriptional interactions
+      * Presentation by Xingzhao Wen (Zhong Lab): Genome-wide RNA-chromatin interaction reveals RNA localization specificity along the nucleus radial axis
   * September 3, 2020
     * Meeting Agenda:

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