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--- 4dn:phase2:scientific_webinar [2023/07/27 13:21]
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+++ 4dn:phase2:scientific_webinar [2025/08/22 08:04] (current)
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 **<font inherit/inherit;;#c0392b;;inherit>Scientific Webinar Calendar:</font> **  [[https://4dnucleome-org.zoom.us/meeting/tJEsc-ytrDksEtWNHy00h-5RmkNx7equ3Nca/ics?icsToken=98tyKuCtrz8vH9aXthGGRowMBY-gZ-_zpnpdj7dqsjf8U3BbL1bEO-lsKuV6Ac2D|click here]] to add all the Scientific Webinar events to your personal calendar
-<font inherit/inherit;;#c0392b;;inherit>**Scientific Webinar Assignments (2021-2024):**</font> [[http://docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing|docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing]]
+<font inherit/inherit;;#c0392b;;inherit>**Scientific Webinar Assignments (2021-2025):**</font> [[http://docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing|docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing]]
 ===== Mission =====
@@ Line 25: / Line 25: @@
 ===== Scientific Webinar Series slides presentations =====
-**July 28, 2023**
+**August 22, 2025**
-**Moderator: Ana Pombo**
+**Zoom recording link**
-**Presenter: ****Aditi Chandra **//(University of Pennsylvania)// - “Quantitative control of Ets1 dosage by a multi-enhancer hub is required for T cell function” (Link to presenter slides)
+**Moderator: Yuan Liu**
-**Presenter: ****Weixiang Fang **//(Johns Hopkins University)//** - **“Mapping complex cell fate dynamics using cell phylogeny” (Link to presenter slides)
+**Presenter: Jodi Lee **//(University of California, San Francisco) //**-** //**"Predictive modeling to assess the role of 3D genome folding in human congenital heart disease"**//  ([[https://drive.google.com/file/d/11mB2tB0l9egVjxAfJckfR3CKb3hy0qxe/view?usp=sharing|Link to presenter slides]])
-  * Scientific Webinar presentations (Phase 1) can be found [[https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive|here]].
+**Presenter: Yanyu Zhu** //(Stanford University) //- **//“High-resolution Dynamic Imaging of Chromatin DNA Communication using Oligo-LiveFISH”//**  ([[https://docs.google.com/presentation/d/1o9bXE1ZnWB0bxaXBYzDf1GE14dgzolUx/edit?usp=drive_link&ouid=105768913603538088409&rtpof=true&sd=true|Link to presenter slides]])
+  * Scientific Webinar presentations (Phase 1) can be found [[https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive|here]].
   * Scientific Webinar presentations (Phase 2) can be found [[https://wiki.4dnucleome.org/4dn:phase2:scientific_webinar_archive|here]].
 ===== 4DN Scientific Webinar Series =====
-<font 16px/inherit;;inherit;;inherit>**July 28, 2023**</font>
+<font 16px/inherit;;inherit;;inherit>**August 22, 2025**</font>
 <font 14px/inherit;;inherit;;inherit>**8:00-8:30 am Pacific Time (20 minute presentation, 10 minute QA)**</font>
-{{:4dn:phase2:aditi_headshot_720.jpg?direct&200|aditi_headshot_720.jpg}}
+**Jodi Lee**
-**Aditi Chandra**
+**Grad Student**
-**Postdoctoral Fellow**
+[[jodi.lee@gladstone.ucsf.edu|]]
-**[[Aditi.Chandra@pennmedicine.upenn.edu|]]**
+**Title: //“Predictive modeling to assess the role of 3D genome folding in human congenital heart disease”// **
-**Title: **//"Quantitative control of Ets1 dosage by a multi-enhancer hub is required for T cell function////"//
+Jodi is a 4th year graduate student studying genetics in Dr. Katherine Pollard’s Lab at the University of California, San Francisco. Jodi’s research focuses on creating and working with deep learning models to study the complex DNA sequence grammar regulating the genome. Currently, she is leveraging Cardiac-Akita, a DNA sequence to 3D genome folding deep learning model, to predict how genetic variants associated with congenital heart defects disrupt 3D genome contacts.
-Aditi Chandra is a postdoctoral research fellow in Vahedi Lab. Aditi received her PhD degree in Biochemistry, from the University of Calcutta, India. Her research interests include understanding the interplay between genomic factors regulating chromatin folding and gene regulation in immune cells.
 <font 14px/inherit;;inherit;;inherit>**8:30-9:00 am Pacific Time (20 minute presentation, 10 minute QA)**</font>
-{{:4dn:phase2:fang_w_720.jpg?direct&200|fang_w_720.jpg}}
+**Yanyu Zhu**
-**Weixiang Fang**
+**Postdoctoral Researcher**
-**Postdoctoral Fellow**
+[[yanyuzhu@stanford.edu|]]
-**[[wfang9@jh.edu|]]**
+**Title: //“High-resolution Dynamic Imaging of Chromatin DNA Communication using Oligo-LiveFISH”// **
-**Title: **//“////**Mapping complex cell fate dynamics using cell phylogeny**”//
+Yanyu Zhu is a postdoctoral researcher in Prof. Stanley Qi’s Lab in the Department of Bioengineering at Stanford University. He obtained his B.S. in Chemistry from Peking University and his Ph.D. in Chemistry from the University of Wisconsin–Madison. In collaboration with Prof. W. E. Moerner’s lab, he developed and applied a high-resolution, reagent-based DNA imaging platform, Oligo-LiveFISH, to investigate 3D chromatin dynamics in live cells. His current research focuses on applying Oligo-LiveFISH to study various biological questions such as the relationship between the 3D genome and gene regulation in real time, as well as investigating the dynamic process of DNA repair.
-Weixiang Fang is a postdoctoral fellow in the Department of Biomeidical Engineering and Center for Epigenetics at Johns Hopkins University. Currently, he is a member of the Reza Kalhor lab, working on developing computational methods for lineage tracing technology and studying developmental biology. Prior to joining the lab, he did his PhD in Dr. Hongkai Ji’s Lab where he conducted research on methods for single cell genomics and functional comparative genomics and was a member of NHGRI’s ENCODE consortium.
-===== HOW TO Join the Webinar =====
 The Webinar Series will be on the **4th Friday of each month from 8am-9am Pacific Time, 11am-12pm Eastern Time.**
-DN OH is inviting you to a scheduled Zoom meeting.
+**4DN OH is inviting you to a scheduled Zoom meeting.**
 Topic: 4DN Scientific Webinar\\ Please download and import the following iCalendar (.ics) files to your calendar system.\\ Monthly: [[https://4dnucleome-org.zoom.us/meeting/tZ0ufu2trzMrG9SNYBoxiO0YxjK3-LEvoHWL/ics?icsToken=98tyKuGhrTIuH9WdsRiHRpx5A4r4LO_zmFxcjfpusibHDDhaTVPPLuhpYf9TNc7f|https://4dnucleome-org.zoom.us/meeting/tZ0ufu2trzMrG9SNYBoxiO0YxjK3-LEvoHWL/ics?icsToken=98tyKuGhrTIuH9WdsRiHRpx5A4r4LO_zmFxcjfpusibHDDhaTVPPLuhpYf9TNc7f]]
@@ Line 96: / Line 91: @@
 <font 16px/inherit;;inherit;;inherit>**Next Scientific Webinar Presentation**</font>
-**When: August 25, 2023**
-**Moderator: Yin Shen **
-  * Presenter from **Maria-Elena Torres-Padilla****'s**  team
-  * Presenter from **Long Cai (contact) Michael Elowitz, Mitchell Guttman'****s team **

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