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--- 4dn:phase2:scientific_webinar [2023/08/25 06:54]
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+++ 4dn:phase2:scientific_webinar [2025/08/22 08:04] (current)
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 **<font inherit/inherit;;#c0392b;;inherit>Scientific Webinar Calendar:</font> **  [[https://4dnucleome-org.zoom.us/meeting/tJEsc-ytrDksEtWNHy00h-5RmkNx7equ3Nca/ics?icsToken=98tyKuCtrz8vH9aXthGGRowMBY-gZ-_zpnpdj7dqsjf8U3BbL1bEO-lsKuV6Ac2D|click here]] to add all the Scientific Webinar events to your personal calendar
-<font inherit/inherit;;#c0392b;;inherit>**Scientific Webinar Assignments (2021-2024):**</font> [[http://docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing|docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing]]
+<font inherit/inherit;;#c0392b;;inherit>**Scientific Webinar Assignments (2021-2025):**</font> [[http://docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing|docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing]]
 ===== Mission =====
@@ Line 25: / Line 25: @@
 ===== Scientific Webinar Series slides presentations =====
-**August 25, 2023**
+**August 22, 2025**
-**Moderator: Yin Shen**
+**Zoom recording link**
-**Presenter: ****Mrinmoy Pal **//(////Institute of Epigenetics and Stem Cells, Helmholtz Munich////)// - //**"Understanding the molecular mechanisms underlying the establishment of nuclear organization during development"**//  ([[https://drive.google.com/file/d/19rcx5QpqufDjCB5QT3QYaRIvS8c4hXsM/view?usp=sharing|Link to presenter slides]])
+**Moderator: Yuan Liu**
-**Presenter: Andrew Perez **//(Caltech)//** - **//**"Multiplexed mapping of the 3D organization of regulatory proteins within the nucleus” **//  ([[https://docs.google.com/presentation/d/1SxUzvuy6IQzKBIq6yERz05wiU5kTWCHc/edit?usp=drive_link&ouid=105768913603538088409&rtpof=true&sd=true|Link to presenter slides]])
+**Presenter: Jodi Lee **//(University of California, San Francisco) //**-** //**"Predictive modeling to assess the role of 3D genome folding in human congenital heart disease"**//  ([[https://drive.google.com/file/d/11mB2tB0l9egVjxAfJckfR3CKb3hy0qxe/view?usp=sharing|Link to presenter slides]])
-  * Scientific Webinar presentations (Phase 1) can be found [[https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive|here]].
+**Presenter: Yanyu Zhu** //(Stanford University) //- **//“High-resolution Dynamic Imaging of Chromatin DNA Communication using Oligo-LiveFISH”//**  ([[https://docs.google.com/presentation/d/1o9bXE1ZnWB0bxaXBYzDf1GE14dgzolUx/edit?usp=drive_link&ouid=105768913603538088409&rtpof=true&sd=true|Link to presenter slides]])
+  * Scientific Webinar presentations (Phase 1) can be found [[https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive|here]].
   * Scientific Webinar presentations (Phase 2) can be found [[https://wiki.4dnucleome.org/4dn:phase2:scientific_webinar_archive|here]].
 ===== 4DN Scientific Webinar Series =====
-<font 16px/inherit;;inherit;;inherit>**August 25, 2023**</font>
+<font 16px/inherit;;inherit;;inherit>**August 22, 2025**</font>
 <font 14px/inherit;;inherit;;inherit>**8:00-8:30 am Pacific Time (20 minute presentation, 10 minute QA)**</font>
-{{:4dn:phase2:mrinmoypal_720.png?250x250}}
+**Jodi Lee**
-**Mrinmoy Pal**
+**Grad Student**
-**PhD Student**
+[[jodi.lee@gladstone.ucsf.edu|]]
-[[Mrinmoy.Pal@helmholtz-munich.de|]]
+**Title: //“Predictive modeling to assess the role of 3D genome folding in human congenital heart disease”// **
-**Title: "Understanding the molecular mechanisms underlying the establishment of nuclear organization during development"**
+Jodi is a 4th year graduate student studying genetics in Dr. Katherine Pollard’s Lab at the University of California, San Francisco. Jodi’s research focuses on creating and working with deep learning models to study the complex DNA sequence grammar regulating the genome. Currently, she is leveraging Cardiac-Akita, a DNA sequence to 3D genome folding deep learning model, to predict how genetic variants associated with congenital heart defects disrupt 3D genome contacts.
-Mrinmoy completed his BS-MS dual degree from the Indian Institutes of Science Education and Research (IISER) Kolkata. After that, he moved to Munich and started his Ph.D. in the group of Maria-Elena Torres-Padilla at the Institute of Epigenetics and Stem Cells (IES). In his Ph.D. project, he is trying to understand how nuclear organization is established in early mouse embryos.
 <font 14px/inherit;;inherit;;inherit>**8:30-9:00 am Pacific Time (20 minute presentation, 10 minute QA)**</font>
-{{:4dn:phase2:guttman0210_360.jpg?250x250|guttman0210_360.jpg}}
+**Yanyu Zhu**
-**Andrew Perez**
+**Postdoctoral Researcher**
-**Graduate student**
+[[yanyuzhu@stanford.edu|]]
-//[[aaperez@lncrna.caltech.edu|]]//
+**Title: //“High-resolution Dynamic Imaging of Chromatin DNA Communication using Oligo-LiveFISH”// **
-**Title: **//**"Multiplexed mapping of the 3D organization of regulatory proteins within the nucleus”** //
+Yanyu Zhu is a postdoctoral researcher in Prof. Stanley Qi’s Lab in the Department of Bioengineering at Stanford University. He obtained his B.S. in Chemistry from Peking University and his Ph.D. in Chemistry from the University of Wisconsin–Madison. In collaboration with Prof. W. E. Moerner’s lab, he developed and applied a high-resolution, reagent-based DNA imaging platform, Oligo-LiveFISH, to investigate 3D chromatin dynamics in live cells. His current research focuses on applying Oligo-LiveFISH to study various biological questions such as the relationship between the 3D genome and gene regulation in real time, as well as investigating the dynamic process of DNA repair.
-Andrew is a 4th year graduate student in the Guttman lab at Caltech. His work focuses on developing new, high throughput methods to study protein-DNA interactions. He is interested in using these new technologies to study transcriptional regulation and how the genome is organized when specific proteins are present.
-===== HOW TO Join the Webinar =====
 The Webinar Series will be on the **4th Friday of each month from 8am-9am Pacific Time, 11am-12pm Eastern Time.**
-DN OH is inviting you to a scheduled Zoom meeting.
+**4DN OH is inviting you to a scheduled Zoom meeting.**
 Topic: 4DN Scientific Webinar\\ Please download and import the following iCalendar (.ics) files to your calendar system.\\ Monthly: [[https://4dnucleome-org.zoom.us/meeting/tZ0ufu2trzMrG9SNYBoxiO0YxjK3-LEvoHWL/ics?icsToken=98tyKuGhrTIuH9WdsRiHRpx5A4r4LO_zmFxcjfpusibHDDhaTVPPLuhpYf9TNc7f|https://4dnucleome-org.zoom.us/meeting/tZ0ufu2trzMrG9SNYBoxiO0YxjK3-LEvoHWL/ics?icsToken=98tyKuGhrTIuH9WdsRiHRpx5A4r4LO_zmFxcjfpusibHDDhaTVPPLuhpYf9TNc7f]]
@@ Line 96: / Line 91: @@
 <font 16px/inherit;;inherit;;inherit>**Next Scientific Webinar Presentation**</font>
-**When: September 22, 2023**
-**Moderator: Ting Wang**
-  * Presenter from **Bo Huang (contact), Geeta Narlikar, Xiaokun Shu's**** team **
-  * Presenter from** Paul Kaufman (contact), Daniel Foltz, Sui Huang**'s team

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