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--- 4dn:phase2:scientific_webinar [2023/10/19 13:33]
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+++ 4dn:phase2:scientific_webinar [2025/08/22 08:04] (current)
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@@ Line 5: / Line 5: @@
 **<font inherit/inherit;;#c0392b;;inherit>Scientific Webinar Calendar:</font> **  [[https://4dnucleome-org.zoom.us/meeting/tJEsc-ytrDksEtWNHy00h-5RmkNx7equ3Nca/ics?icsToken=98tyKuCtrz8vH9aXthGGRowMBY-gZ-_zpnpdj7dqsjf8U3BbL1bEO-lsKuV6Ac2D|click here]] to add all the Scientific Webinar events to your personal calendar
-<font inherit/inherit;;#c0392b;;inherit>**Scientific Webinar Assignments (2021-2024):**</font> [[http://docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing|docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing]]
+<font inherit/inherit;;#c0392b;;inherit>**Scientific Webinar Assignments (2021-2025):**</font> [[http://docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing|docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing]]
 ===== Mission =====
@@ Line 25: / Line 25: @@
 ===== Scientific Webinar Series slides presentations =====
-**October 27, 2023**
+**August 22, 2025**
-**Moderator: Yin Shen**
+**Zoom recording link**
-**Presenter: ****Ariel Pourmorady **//(Columbia University////)// - //**“A symmetry breaking process proposes noncoding functions for olfactory receptor RNAs” **// (Link to presenter slides)
+**Moderator: Yuan Liu**
-**Presenter: Bence Daniel **//(UMASS Chan Medical School)//** - **//**“Tools and tales from studies of Nuclear Body dynamics”** // ([[https://drive.google.com/file/d/1etPGaVY1F9bZrVjJplwpsRHynVPOZlXK/view?usp=drive_link|Link to presenter slides]])
+**Presenter: Jodi Lee **//(University of California, San Francisco) //**-** //**"Predictive modeling to assess the role of 3D genome folding in human congenital heart disease"**//  ([[https://drive.google.com/file/d/11mB2tB0l9egVjxAfJckfR3CKb3hy0qxe/view?usp=sharing|Link to presenter slides]])
-  * Scientific Webinar presentations (Phase 1) can be found [[https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive|here]].
+**Presenter: Yanyu Zhu** //(Stanford University) //- **//“High-resolution Dynamic Imaging of Chromatin DNA Communication using Oligo-LiveFISH”//**  ([[https://docs.google.com/presentation/d/1o9bXE1ZnWB0bxaXBYzDf1GE14dgzolUx/edit?usp=drive_link&ouid=105768913603538088409&rtpof=true&sd=true|Link to presenter slides]])
+  * Scientific Webinar presentations (Phase 1) can be found [[https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive|here]].
   * Scientific Webinar presentations (Phase 2) can be found [[https://wiki.4dnucleome.org/4dn:phase2:scientific_webinar_archive|here]].
 ===== 4DN Scientific Webinar Series =====
-<font 16px/inherit;;inherit;;inherit>**September 22, 2023**</font>
+<font 16px/inherit;;inherit;;inherit>**August 22, 2025**</font>
 <font 14px/inherit;;inherit;;inherit>**8:00-8:30 am Pacific Time (20 minute presentation, 10 minute QA)**</font>
-**Ariel Pourmorady**
+**Jodi Lee**
-**MD-PhD Student**
+**Grad Student**
-[[adp2164@cumc.columbia.edu|]]
+[[jodi.lee@gladstone.ucsf.edu|]]
-**Title://// **//**"A symmetry breaking process proposes noncoding functions for olfactory receptor RNAs"**// I am currently a 6th year MD-PhD student at Columbia University in the lab of Dr. Stavros Lomvardas. As a graduate student my research has been primarily focused on clarifying the genomic transformations that take place to facilitate olfactory receptor choice in the mouse main olfactory epithelium. I have used a variety of single-cell genomics technologies as well as mouse genetics to uncover a differentiation-dependent process whereby olfactory receptor genes compete for transcriptional selection. Broadly, I am interested in understanding how neurons employ gene regulatory programs—modifying chromatin state, nuclear architecture, and more—to support normal cell development and function.
+**Title: //“Predictive modeling to assess the role of 3D genome folding in human congenital heart disease”// **
-<font 14px/inherit;;inherit;;inherit>**8:30-9:00 am Pacific Time (20 minute presentation, 10 minute QA)**</font>
-{{:4dn:phase2:kaufman_img_0956_crop_720.jpg?direct&200|kaufman_img_0956_crop_720.jpg}}
+Jodi is a 4th year graduate student studying genetics in Dr. Katherine Pollard’s Lab at the University of California, San Francisco. Jodi’s research focuses on creating and working with deep learning models to study the complex DNA sequence grammar regulating the genome. Currently, she is leveraging Cardiac-Akita, a DNA sequence to 3D genome folding deep learning model, to predict how genetic variants associated with congenital heart defects disrupt 3D genome contacts.
-**Paul Kaufman**
+<font 14px/inherit;;inherit;;inherit>**8:30-9:00 am Pacific Time (20 minute presentation, 10 minute QA)**</font>
-**Professor**
+**Yanyu Zhu**
-//[[paul.kaufman1@umassmed.edu|]]//
+**Postdoctoral Researcher**
-**Title:****// “Tools and tales from studies of Nuclear Body dynamics”// **
+[[yanyuzhu@stanford.edu|]]
-Paul Kaufman is a Professor in the Department of Molecular, Cell and Cancer Biology at UMASS Chan Medical School. He has studied multiple aspects of chromosome biology over the years. Currently he is collaborating with the laboratories of Drs. Daniel Foltz and Sui Huang at the Northwestern University Feinberg School of Medicine, studying the cell biology of dynamic events during cell differentiation and responses to external stimuli.
+**Title: //“High-resolution Dynamic Imaging of Chromatin DNA Communication using Oligo-LiveFISH”// **
-===== HOW TO Join the Webinar =====
+Yanyu Zhu is a postdoctoral researcher in Prof. Stanley Qi’s Lab in the Department of Bioengineering at Stanford University. He obtained his B.S. in Chemistry from Peking University and his Ph.D. in Chemistry from the University of Wisconsin–Madison. In collaboration with Prof. W. E. Moerner’s lab, he developed and applied a high-resolution, reagent-based DNA imaging platform, Oligo-LiveFISH, to investigate 3D chromatin dynamics in live cells. His current research focuses on applying Oligo-LiveFISH to study various biological questions such as the relationship between the 3D genome and gene regulation in real time, as well as investigating the dynamic process of DNA repair.
 The Webinar Series will be on the **4th Friday of each month from 8am-9am Pacific Time, 11am-12pm Eastern Time.**
-DN OH is inviting you to a scheduled Zoom meeting.
+**4DN OH is inviting you to a scheduled Zoom meeting.**
 Topic: 4DN Scientific Webinar\\ Please download and import the following iCalendar (.ics) files to your calendar system.\\ Monthly: [[https://4dnucleome-org.zoom.us/meeting/tZ0ufu2trzMrG9SNYBoxiO0YxjK3-LEvoHWL/ics?icsToken=98tyKuGhrTIuH9WdsRiHRpx5A4r4LO_zmFxcjfpusibHDDhaTVPPLuhpYf9TNc7f|https://4dnucleome-org.zoom.us/meeting/tZ0ufu2trzMrG9SNYBoxiO0YxjK3-LEvoHWL/ics?icsToken=98tyKuGhrTIuH9WdsRiHRpx5A4r4LO_zmFxcjfpusibHDDhaTVPPLuhpYf9TNc7f]]
@@ Line 91: / Line 91: @@
 <font 16px/inherit;;inherit;;inherit>**Next Scientific Webinar Presentation**</font>
-**When: October 27, 2023**
-**Moderator: Yin Sheng**
-  * Presenter from **Stavros Lomvardas**'**s team **
-  * Presenter from**Ansuman Satpathy's**  team

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