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--- 4dn:phase2:scientific_webinar [2024/01/26 07:13]
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+++ 4dn:phase2:scientific_webinar [2025/08/22 08:04] (current)
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 **<font inherit/inherit;;#c0392b;;inherit>Scientific Webinar Calendar:</font> **  [[https://4dnucleome-org.zoom.us/meeting/tJEsc-ytrDksEtWNHy00h-5RmkNx7equ3Nca/ics?icsToken=98tyKuCtrz8vH9aXthGGRowMBY-gZ-_zpnpdj7dqsjf8U3BbL1bEO-lsKuV6Ac2D|click here]] to add all the Scientific Webinar events to your personal calendar
-<font inherit/inherit;;#c0392b;;inherit>**Scientific Webinar Assignments (2021-2024):**</font> [[http://docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing|docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing]]
+<font inherit/inherit;;#c0392b;;inherit>**Scientific Webinar Assignments (2021-2025):**</font> [[http://docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing|docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing]]
 ===== Mission =====
@@ Line 25: / Line 25: @@
 ===== Scientific Webinar Series slides presentations =====
-**January 26, 2024**
+**August 22, 2025**
-**Moderator: Sui Huang**
+**Zoom recording link**
-**Presenter: Yue Yang**//(Northwestern University////)// - //**“** //**Multiple modes for compartmentalizing the transcriptionally-active genome in the brain**//**” **//  ([[https://drive.google.com/file/d/1vrURwBDwxfqk4lTWv8Bg-tWKLQ2wRTU4/view?usp=drive_link|Link to presenter slides]])
+**Moderator: Yuan Liu**
-**Presenter: Rahul Munshi **//(Princeton University)//** - **//**“** //**Transcription factor clusters as information transfer agents**//**”** // ([[https://docs.google.com/presentation/d/1cVmADOTaqA4CPqRp4_YpCgTM4YnPgxav/edit?usp=drive_link&ouid=105768913603538088409&rtpof=true&sd=true|Link to presenter slides]])
-  * Scientific Webinar presentations (Phase 1) can be found [[https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive|here]].
+**Presenter: Jodi Lee **//(University of California, San Francisco) //**-** //**"Predictive modeling to assess the role of 3D genome folding in human congenital heart disease"**//  ([[https://drive.google.com/file/d/11mB2tB0l9egVjxAfJckfR3CKb3hy0qxe/view?usp=sharing|Link to presenter slides]])
+**Presenter: Yanyu Zhu** //(Stanford University) //- **//“High-resolution Dynamic Imaging of Chromatin DNA Communication using Oligo-LiveFISH”//**  ([[https://docs.google.com/presentation/d/1o9bXE1ZnWB0bxaXBYzDf1GE14dgzolUx/edit?usp=drive_link&ouid=105768913603538088409&rtpof=true&sd=true|Link to presenter slides]])
+  * Scientific Webinar presentations (Phase 1) can be found [[https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive|here]].
   * Scientific Webinar presentations (Phase 2) can be found [[https://wiki.4dnucleome.org/4dn:phase2:scientific_webinar_archive|here]].
 ===== 4DN Scientific Webinar Series =====
-<font 16px/inherit;;inherit;;inherit>**January 26, 2024**</font>
+<font 16px/inherit;;inherit;;inherit>**August 22, 2025**</font>
 <font 14px/inherit;;inherit;;inherit>**8:00-8:30 am Pacific Time (20 minute presentation, 10 minute QA)**</font>
-{{:4dn:phase2:yang_yue_480.png?direct&200}}
+**Jodi Lee**
-**Yue Yang**
+**Grad Student**
-**Assistant Professor**
+[[jodi.lee@gladstone.ucsf.edu|]]
-[[yue.yang@northwestern.edu|]]
+**Title: //“Predictive modeling to assess the role of 3D genome folding in human congenital heart disease”// **
-**Title: **//**"** //**Multiple modes for compartmentalizing the transcriptionally-active genome in the brain**//**"**//  Yue Yang is an Assistant Professor in the Department of Neurobiology at Northwestern University. He studies chromatin regulation in the brain during development or in response to sensorimotor experiences in adult mice. He is collaborating with Dr. Tomoko Yamada at Northwestern University to study how nuclear compartmentalization regulates different groups of transcriptionally-active genes in neurons. <font 14px/inherit;;inherit;;inherit>**8:30-9:00 am Pacific Time (20 minute presentation, 10 minute QA)**</font>
+Jodi is a 4th year graduate student studying genetics in Dr. Katherine Pollard’s Lab at the University of California, San Francisco. Jodi’s research focuses on creating and working with deep learning models to study the complex DNA sequence grammar regulating the genome. Currently, she is leveraging Cardiac-Akita, a DNA sequence to 3D genome folding deep learning model, to predict how genetic variants associated with congenital heart defects disrupt 3D genome contacts.
-{{:4dn:phase2:munshi_rahul_480.png?direct&200}}
-**Rahul Munshi**
+<font 14px/inherit;;inherit;;inherit>**8:30-9:00 am Pacific Time (20 minute presentation, 10 minute QA)**</font>
-**Postdoctoral Fellow**
+**Yanyu Zhu**
-//[[munshi@princeton.edu|]]//
+**Postdoctoral Researcher**
-**Title:// “// ****Transcription factor clusters as information transfer agents****//”//**  Rahul is a postdoctoral researcher in Thomas Gregor’s lab at Princeton University's Department of Physics and the Lewis Sigler Institute of Integrative Genomics. He earned his Ph.D. in Physics from the University at Buffalo, NY. Rahul's focus is on unraveling the fundamental principles that govern the precision of information processing in biological systems. Currently, his interest lies in understanding how gene expression is regulated by sub-nuclear transcription factor assemblies.
+[[yanyuzhu@stanford.edu|]]
-===== HOW TO Join the Webinar =====
+**Title: //“High-resolution Dynamic Imaging of Chromatin DNA Communication using Oligo-LiveFISH”// **
+Yanyu Zhu is a postdoctoral researcher in Prof. Stanley Qi’s Lab in the Department of Bioengineering at Stanford University. He obtained his B.S. in Chemistry from Peking University and his Ph.D. in Chemistry from the University of Wisconsin–Madison. In collaboration with Prof. W. E. Moerner’s lab, he developed and applied a high-resolution, reagent-based DNA imaging platform, Oligo-LiveFISH, to investigate 3D chromatin dynamics in live cells. His current research focuses on applying Oligo-LiveFISH to study various biological questions such as the relationship between the 3D genome and gene regulation in real time, as well as investigating the dynamic process of DNA repair.
 The Webinar Series will be on the **4th Friday of each month from 8am-9am Pacific Time, 11am-12pm Eastern Time.**
-DN OH is inviting you to a scheduled Zoom meeting.
+**4DN OH is inviting you to a scheduled Zoom meeting.**
 Topic: 4DN Scientific Webinar\\ Please download and import the following iCalendar (.ics) files to your calendar system.\\ Monthly: [[https://4dnucleome-org.zoom.us/meeting/tZ0ufu2trzMrG9SNYBoxiO0YxjK3-LEvoHWL/ics?icsToken=98tyKuGhrTIuH9WdsRiHRpx5A4r4LO_zmFxcjfpusibHDDhaTVPPLuhpYf9TNc7f|https://4dnucleome-org.zoom.us/meeting/tZ0ufu2trzMrG9SNYBoxiO0YxjK3-LEvoHWL/ics?icsToken=98tyKuGhrTIuH9WdsRiHRpx5A4r4LO_zmFxcjfpusibHDDhaTVPPLuhpYf9TNc7f]]
@@ Line 87: / Line 91: @@
 <font 16px/inherit;;inherit;;inherit>**Next Scientific Webinar Presentation**</font>
-**When: February 23, 2024**
-**Moderator: Ting Wang**
-  * Presenter from **Wenbo Li**'**s team **
-  * Presenter from **Danwei Huangfu (contact), Effie Apostolou, Christina Leslie****'s**  team

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