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--- 4dn:phase2:scientific_webinar [2024/03/18 09:40]
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+++ 4dn:phase2:scientific_webinar [2025/08/22 08:04] (current)
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@@ Line 5: / Line 5: @@
 **<font inherit/inherit;;#c0392b;;inherit>Scientific Webinar Calendar:</font> **  [[https://4dnucleome-org.zoom.us/meeting/tJEsc-ytrDksEtWNHy00h-5RmkNx7equ3Nca/ics?icsToken=98tyKuCtrz8vH9aXthGGRowMBY-gZ-_zpnpdj7dqsjf8U3BbL1bEO-lsKuV6Ac2D|click here]] to add all the Scientific Webinar events to your personal calendar
-<font inherit/inherit;;#c0392b;;inherit>**Scientific Webinar Assignments (2021-2024):**</font> [[http://docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing|docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing]]
+<font inherit/inherit;;#c0392b;;inherit>**Scientific Webinar Assignments (2021-2025):**</font> [[http://docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing|docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing]]
 ===== Mission =====
@@ Line 25: / Line 25: @@
 ===== Scientific Webinar Series slides presentations =====
-**March 22, 2024**
+**August 22, 2025**
-**Moderator: Ana Pombo**
+**Zoom recording link**
-**Presenter: Siyuan Wang **//(Yale School of Medicine////)// - **//“// **//**Perturb-tracing enables scalable high-content discovery of 3D genome regulators** ////**"**//  ([[https://docs.google.com/presentation/d/1wZB0QxwdYvrw_yIScNOCYKoWth6qV2EO/edit?usp=drive_link&ouid=105768913603538088409&rtpof=true&sd=true|Link to presenter slides]])
+**Moderator: Yuan Liu**
-**Presenter: ****Xiekui Cui **//(////UCSF)//** - //“// **//**Comparative Characterization of Human Accelerated Regions in Excitatory Neurons****”** // (Link to presenter slides)
+**Presenter: Jodi Lee **//(University of California, San Francisco) //**-** //**"Predictive modeling to assess the role of 3D genome folding in human congenital heart disease"**//  ([[https://drive.google.com/file/d/11mB2tB0l9egVjxAfJckfR3CKb3hy0qxe/view?usp=sharing|Link to presenter slides]])
-  * Scientific Webinar presentations (Phase 1) can be found [[https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive|here]].
+**Presenter: Yanyu Zhu** //(Stanford University) //- **//“High-resolution Dynamic Imaging of Chromatin DNA Communication using Oligo-LiveFISH”//**  ([[https://docs.google.com/presentation/d/1o9bXE1ZnWB0bxaXBYzDf1GE14dgzolUx/edit?usp=drive_link&ouid=105768913603538088409&rtpof=true&sd=true|Link to presenter slides]])
+  * Scientific Webinar presentations (Phase 1) can be found [[https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive|here]].
   * Scientific Webinar presentations (Phase 2) can be found [[https://wiki.4dnucleome.org/4dn:phase2:scientific_webinar_archive|here]].
 ===== 4DN Scientific Webinar Series =====
-<font 16px/inherit;;inherit;;inherit>**March 22, 2024**</font>
+<font 16px/inherit;;inherit;;inherit>**August 22, 2025**</font>
 <font 14px/inherit;;inherit;;inherit>**8:00-8:30 am Pacific Time (20 minute presentation, 10 minute QA)**</font>
-{{:4dn:phase2:siyuan_wang_photo_720.jpg?direct&200|siyuan_wang_photo_720.jpg}}
+**Jodi Lee**
-**Siyuan Wang**
+**Grad Student**
-**Associate Professor**
+[[jodi.lee@gladstone.ucsf.edu|]]
-[[siyuan.wang@yale.edu|]]
+**Title: //“Predictive modeling to assess the role of 3D genome folding in human congenital heart disease”// **
-**Title: **//**"****Perturb-tracing enables scalable high-content discovery of 3D genome regulators** ////**"** //
+Jodi is a 4th year graduate student studying genetics in Dr. Katherine Pollard’s Lab at the University of California, San Francisco. Jodi’s research focuses on creating and working with deep learning models to study the complex DNA sequence grammar regulating the genome. Currently, she is leveraging Cardiac-Akita, a DNA sequence to 3D genome folding deep learning model, to predict how genetic variants associated with congenital heart defects disrupt 3D genome contacts.
-Siyuan (Steven) Wang, Ph. D., is an Associate Professor of Genetics and Cell Biology at Yale School of Medicine. Research in his lab focuses on the development and application of state-of-the-art image-based omics approaches to understand the spatial organization of mammalian genome and transcriptome, and how they impact cellular states. Originally from China, Dr. Wang received a Bachelor of Science degree in Physics from Peking University in 2007. He then moved to the US and received a Ph. D. in Molecular Biology from Princeton in 2011 and later his postdoctoral training at Harvard. In 2017 he was appointed Assistant Professor by Yale University, and was promoted to the rank of Associate Professor in 2023.
+<font 14px/inherit;;inherit;;inherit>**8:30-9:00 am Pacific Time (20 minute presentation, 10 minute QA)**</font>
-<font 14px/inherit;;inherit;;inherit>**8:30-9:00 am Pacific Time (20 minute presentation, 10 minute QA)**</font>**TBD**
+**Yanyu Zhu**
-{{:4dn:phase2:cui_x._720.jpg?direct&200|cui_x._720.jpg}}
+**Postdoctoral Researcher**
-**Xiekui Cui**
+[[yanyuzhu@stanford.edu|]]
-**Postdoctoral Researcher**
+**Title: //“High-resolution Dynamic Imaging of Chromatin DNA Communication using Oligo-LiveFISH”// **
-[[xiekui.cui@ucsf.edu|]]
-**Title:// “// **//**Comparative Characterization of Human Accelerated Regions in Excitatory Neurons** //**//”//**  Xiekui's fascination with epigenetic silencing and the functional co-option of transposable elements began during his PhD training at the Chinese Academy of Sciences. As a postdoctoral researcher in Dr. Yin Shen’s laboratory at UCSF, he delves into unraveling the regulatory functions of the dark genome in humans. Currently, his research endeavors focus on deciphering how human accelerated regions influence the regulation of gene expression related to human brain evolution.
+Yanyu Zhu is a postdoctoral researcher in Prof. Stanley Qi’s Lab in the Department of Bioengineering at Stanford University. He obtained his B.S. in Chemistry from Peking University and his Ph.D. in Chemistry from the University of Wisconsin–Madison. In collaboration with Prof. W. E. Moerner’s lab, he developed and applied a high-resolution, reagent-based DNA imaging platform, Oligo-LiveFISH, to investigate 3D chromatin dynamics in live cells. His current research focuses on applying Oligo-LiveFISH to study various biological questions such as the relationship between the 3D genome and gene regulation in real time, as well as investigating the dynamic process of DNA repair.
-===== HOW TO Join the Webinar =====
 The Webinar Series will be on the **4th Friday of each month from 8am-9am Pacific Time, 11am-12pm Eastern Time.**
-DN OH is inviting you to a scheduled Zoom meeting.
+**4DN OH is inviting you to a scheduled Zoom meeting.**
 Topic: 4DN Scientific Webinar\\ Please download and import the following iCalendar (.ics) files to your calendar system.\\ Monthly: [[https://4dnucleome-org.zoom.us/meeting/tZ0ufu2trzMrG9SNYBoxiO0YxjK3-LEvoHWL/ics?icsToken=98tyKuGhrTIuH9WdsRiHRpx5A4r4LO_zmFxcjfpusibHDDhaTVPPLuhpYf9TNc7f|https://4dnucleome-org.zoom.us/meeting/tZ0ufu2trzMrG9SNYBoxiO0YxjK3-LEvoHWL/ics?icsToken=98tyKuGhrTIuH9WdsRiHRpx5A4r4LO_zmFxcjfpusibHDDhaTVPPLuhpYf9TNc7f]]
@@ Line 93: / Line 91: @@
 <font 16px/inherit;;inherit;;inherit>**Next Scientific Webinar Presentation**</font>
-**When: April 26, 2024**
-**Moderator: Golnaz Vahedi**
-  * Presenter from **Xiangmin Xu (contact), Carl Cotman, Bing Ren**'**s team **
-  * Presenter from **Benoit Bruneau (contact), Katherine Pollard****'s**  team

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