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--- 4dn:phase2:scientific_webinar [2024/04/18 14:52]
oh [Scientific Webinar Series slides presentations]
+++ 4dn:phase2:scientific_webinar [2025/08/22 08:04] (current)
4dnedit
@@ Line 5: / Line 5: @@
 **<font inherit/inherit;;#c0392b;;inherit>Scientific Webinar Calendar:</font> **  [[https://4dnucleome-org.zoom.us/meeting/tJEsc-ytrDksEtWNHy00h-5RmkNx7equ3Nca/ics?icsToken=98tyKuCtrz8vH9aXthGGRowMBY-gZ-_zpnpdj7dqsjf8U3BbL1bEO-lsKuV6Ac2D|click here]] to add all the Scientific Webinar events to your personal calendar
-<font inherit/inherit;;#c0392b;;inherit>**Scientific Webinar Assignments (2021-2024):**</font> [[http://docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing|docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing]]
+<font inherit/inherit;;#c0392b;;inherit>**Scientific Webinar Assignments (2021-2025):**</font> [[http://docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing|docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing]]
 ===== Mission =====
@@ Line 25: / Line 25: @@
 ===== Scientific Webinar Series slides presentations =====
-**April 26, 2024**
+**August 22, 2025**
-**Moderator: Golnaz Vahedi**
+**Zoom recording link**
-{{:4dn:phase2:nathan_zemke_720.jpg?200|}}
+**Moderator: Yuan Liu**
-**Presenter: Nathan Zemke **//(UCLA////)// - **//“// **//**Single-Cell Multi-omic Analysis of Aging-Associated Gene Regulatory Programs in the Human Hippocampus** //**//"//**  ([[https://docs.google.com/presentation/d/1wZB0QxwdYvrw_yIScNOCYKoWth6qV2EO/edit?usp=drive_link&ouid=105768913603538088409&rtpof=true&sd=true|Link to presenter slides]])
+**Presenter: Jodi Lee **//(University of California, San Francisco) //**-** //**"Predictive modeling to assess the role of 3D genome folding in human congenital heart disease"**//  ([[https://drive.google.com/file/d/11mB2tB0l9egVjxAfJckfR3CKb3hy0qxe/view?usp=sharing|Link to presenter slides]])
-{{:4dn:phase2:zoegrant_bright_720.jpg?200|}}
+**Presenter: Yanyu Zhu** //(Stanford University) //- **//“High-resolution Dynamic Imaging of Chromatin DNA Communication using Oligo-LiveFISH”//**  ([[https://docs.google.com/presentation/d/1o9bXE1ZnWB0bxaXBYzDf1GE14dgzolUx/edit?usp=drive_link&ouid=105768913603538088409&rtpof=true&sd=true|Link to presenter slides]])
-**Presenter: Zoe Grant **//(Gladstones Institute////)//** - //“// **//**Understanding human cardiac chromatin organization by a lineage-determining transcription factor****”** // ([[https://drive.google.com/file/d/1-vBbir2_d_WSJdsbCZYWZAuKMnNPYuT1/view?usp=drive_link|Link to presenter slides]])
   * Scientific Webinar presentations (Phase 1) can be found [[https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive|here]].
   * Scientific Webinar presentations (Phase 2) can be found [[https://wiki.4dnucleome.org/4dn:phase2:scientific_webinar_archive|here]].
 ===== 4DN Scientific Webinar Series =====
-<font 16px/inherit;;inherit;;inherit>**April 26, 2024**</font>
+<font 16px/inherit;;inherit;;inherit>**August 22, 2025**</font>
 <font 14px/inherit;;inherit;;inherit>**8:00-8:30 am Pacific Time (20 minute presentation, 10 minute QA)**</font>
-**PHOTO**
+**Jodi Lee**
-**Nathan Zemke**
+**Grad Student**
-**Ph.D.**
+[[jodi.lee@gladstone.ucsf.edu|]]
-[[nzemke@health.ucsd.edu|]]
+**Title: //“Predictive modeling to assess the role of 3D genome folding in human congenital heart disease”// **
-**Title: **//**"****Single-Cell Multi-omic Analysis of Aging-Associated Gene Regulatory Programs in the Human Hippocampus****"** //
+Jodi is a 4th year graduate student studying genetics in Dr. Katherine Pollard’s Lab at the University of California, San Francisco. Jodi’s research focuses on creating and working with deep learning models to study the complex DNA sequence grammar regulating the genome. Currently, she is leveraging Cardiac-Akita, a DNA sequence to 3D genome folding deep learning model, to predict how genetic variants associated with congenital heart defects disrupt 3D genome contacts.
-Nathan Zemke obtained his Ph.D. in 2019 from UCLA. He joined the lab of Dr. Bing Ren as a postdoc in 2020, researching gene regulatory programs in neurodegenerative disease and evolution. He is now Associate Director of Single Cell Genomics at the Center for Epigenomics at UCSD devoted to profiling the epigenome and organization of the 3D genome and utilizing this information to understand human diseases.
+<font 14px/inherit;;inherit;;inherit>**8:30-9:00 am Pacific Time (20 minute presentation, 10 minute QA)**</font>
-<font 14px/inherit;;inherit;;inherit>**8:30-9:00 am Pacific Time (20 minute presentation, 10 minute QA)**</font>**TBD**
+**Yanyu Zhu**
-**PHOTO**
+**Postdoctoral Researcher**
-**Zoe Grant**
+[[yanyuzhu@stanford.edu|]]
-**Postdoc**
+**Title: //“High-resolution Dynamic Imaging of Chromatin DNA Communication using Oligo-LiveFISH”// **
-[[zoe.grant@gladstone.ucsf.edu|]]
+Yanyu Zhu is a postdoctoral researcher in Prof. Stanley Qi’s Lab in the Department of Bioengineering at Stanford University. He obtained his B.S. in Chemistry from Peking University and his Ph.D. in Chemistry from the University of Wisconsin–Madison. In collaboration with Prof. W. E. Moerner’s lab, he developed and applied a high-resolution, reagent-based DNA imaging platform, Oligo-LiveFISH, to investigate 3D chromatin dynamics in live cells. His current research focuses on applying Oligo-LiveFISH to study various biological questions such as the relationship between the 3D genome and gene regulation in real time, as well as investigating the dynamic process of DNA repair.
-**Title:// “// ****//Understanding human cardiac chromatin organization by a lineage-determining transcription factor// ****//”//**  Zoe Grant is a postdoctoral scientist in Dr. Benoit Bruneau’s lab at the Gladstone Institutes, San Francisco. She earned her PhD from the University of Melbourne and Walter and Eliza Hall Institute in 2019, studying regulation of cell fate during angiogenesis. Her postdoctoral work aims to understand the molecular mechanisms of transcription factor haploinsufficiency underlying congenital heart defects.
-===== HOW TO Join the Webinar =====
 The Webinar Series will be on the **4th Friday of each month from 8am-9am Pacific Time, 11am-12pm Eastern Time.**
-DN OH is inviting you to a scheduled Zoom meeting.
+**4DN OH is inviting you to a scheduled Zoom meeting.**
 Topic: 4DN Scientific Webinar\\ Please download and import the following iCalendar (.ics) files to your calendar system.\\ Monthly: [[https://4dnucleome-org.zoom.us/meeting/tZ0ufu2trzMrG9SNYBoxiO0YxjK3-LEvoHWL/ics?icsToken=98tyKuGhrTIuH9WdsRiHRpx5A4r4LO_zmFxcjfpusibHDDhaTVPPLuhpYf9TNc7f|https://4dnucleome-org.zoom.us/meeting/tZ0ufu2trzMrG9SNYBoxiO0YxjK3-LEvoHWL/ics?icsToken=98tyKuGhrTIuH9WdsRiHRpx5A4r4LO_zmFxcjfpusibHDDhaTVPPLuhpYf9TNc7f]]
@@ Line 97: / Line 91: @@
 <font 16px/inherit;;inherit;;inherit>**Next Scientific Webinar Presentation**</font>
-**When: May 24, 2024**
-**Moderator: Taekjip Ha**
-  * Presenter from J**ennifer Phillips-Cremins (contact), Gerd Blobel, Lei Stanley Qi, Arjun Raj**'**s team **
-  * Presenter from **Jian Ma (contact) Frank Alber, Andrew Belmont, Chao-Ting Wu****'s**  team

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