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--- 4dn:phase2:scientific_webinar [2024/06/10 15:19]
oh [4DN Scientific Webinar Series]
+++ 4dn:phase2:scientific_webinar [2025/08/22 08:04] (current)
4dnedit
@@ Line 5: / Line 5: @@
 **<font inherit/inherit;;#c0392b;;inherit>Scientific Webinar Calendar:</font> **  [[https://4dnucleome-org.zoom.us/meeting/tJEsc-ytrDksEtWNHy00h-5RmkNx7equ3Nca/ics?icsToken=98tyKuCtrz8vH9aXthGGRowMBY-gZ-_zpnpdj7dqsjf8U3BbL1bEO-lsKuV6Ac2D|click here]] to add all the Scientific Webinar events to your personal calendar
-<font inherit/inherit;;#c0392b;;inherit>**Scientific Webinar Assignments (2021-2024):**</font> [[http://docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing|docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing]]
+<font inherit/inherit;;#c0392b;;inherit>**Scientific Webinar Assignments (2021-2025):**</font> [[http://docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing|docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing]]
 ===== Mission =====
@@ Line 25: / Line 25: @@
 ===== Scientific Webinar Series slides presentations =====
-**June 28, 2024**
+**August 22, 2025**
-**Moderator: Wenbo Li**
+**Zoom recording link**
-**Presenter: ****Yang Xie**// (University of California San Diego)//** - //"Droplet Hi-C for Fast and Scalable Profiling of Chromatin Architecture in Single Cells"// **//** **//  (Link to presenter slides)
+**Moderator: Yuan Liu**
-**Presenter: ****Yarui Diao**// (Duke University)//** - //“scHiCAR: a tri-modal single-cell technology for integrated transcriptome, epigenome, and 3D genome analysis in complex tissues”// **** ** (Link to presenter slides)
+**Presenter: Jodi Lee **//(University of California, San Francisco) //**-** //**"Predictive modeling to assess the role of 3D genome folding in human congenital heart disease"**//  ([[https://drive.google.com/file/d/11mB2tB0l9egVjxAfJckfR3CKb3hy0qxe/view?usp=sharing|Link to presenter slides]])
-  * Scientific Webinar presentations (Phase 1) can be found [[https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive|here]].
+**Presenter: Yanyu Zhu** //(Stanford University) //- **//“High-resolution Dynamic Imaging of Chromatin DNA Communication using Oligo-LiveFISH”//**  ([[https://docs.google.com/presentation/d/1o9bXE1ZnWB0bxaXBYzDf1GE14dgzolUx/edit?usp=drive_link&ouid=105768913603538088409&rtpof=true&sd=true|Link to presenter slides]])
+  * Scientific Webinar presentations (Phase 1) can be found [[https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive|here]].
   * Scientific Webinar presentations (Phase 2) can be found [[https://wiki.4dnucleome.org/4dn:phase2:scientific_webinar_archive|here]].
 ===== 4DN Scientific Webinar Series =====
-<font 16px/inherit;;inherit;;inherit>**June 28, 2024**</font>
+<font 16px/inherit;;inherit;;inherit>**August 22, 2025**</font>
 <font 14px/inherit;;inherit;;inherit>**8:00-8:30 am Pacific Time (20 minute presentation, 10 minute QA)**</font>
-{{:4dn:phase2:diao_headshot_2023.jpg?200|}}
+**Jodi Lee**
-**Yarui Diao **
+**Grad Student**
-**Assistant Professor**
+[[jodi.lee@gladstone.ucsf.edu|]]
-[[yarui.diao@duke.edu|]]
+**Title: //“Predictive modeling to assess the role of 3D genome folding in human congenital heart disease”// **
-**Title: //“scHiCAR: a tri-modal single-cell technology for integrated transcriptome, epigenome, and 3D genome analysis in complex tissues”// **
+Jodi is a 4th year graduate student studying genetics in Dr. Katherine Pollard’s Lab at the University of California, San Francisco. Jodi’s research focuses on creating and working with deep learning models to study the complex DNA sequence grammar regulating the genome. Currently, she is leveraging Cardiac-Akita, a DNA sequence to 3D genome folding deep learning model, to predict how genetic variants associated with congenital heart defects disrupt 3D genome contacts.
-My research program, ‘Regeneration Genomics’, focuses on unraveling gene regulatory mechanisms driving cell fate changes during embryonic development and tissue regeneration, and understanding how these processes are disrupted in human diseases. In our quest to decode the fundamental mechanisms of gene regulation, we have also developed several cutting-edge genome profiling and engineering tools, including CREST-seq, HiCAR, CARGO-BioID, and scHiCAR, that benefit both our research and the broader scientific community. Prior to starting my own lab at Duke Cell Biology in 2018, I received my PhD from the Hong Kong University of Science and Technology, where I studied skeletal muscle differentiation and regeneration. I was also a Human Frontier Science Program (HFSP) Postdoctoral Fellow, trained with Dr. Bing Ren at UCSD.
 <font 14px/inherit;;inherit;;inherit>**8:30-9:00 am Pacific Time (20 minute presentation, 10 minute QA)**</font>
-{{:4dn:phase2:yang_xie.jpg?200|}}
+**Yanyu Zhu**
-**Yang Xie**
+**Postdoctoral Researcher**
-**Ph.D. Candidate**
+[[yanyuzhu@stanford.edu|]]
-[[y2xie@health.ucsd.edu|]]
+**Title: //“High-resolution Dynamic Imaging of Chromatin DNA Communication using Oligo-LiveFISH”// **
-**Title: ****//“Droplet Hi-C for Fast and Scalable Profiling of Chromatin Architecture in Single Cells”// **
+Yanyu Zhu is a postdoctoral researcher in Prof. Stanley Qi’s Lab in the Department of Bioengineering at Stanford University. He obtained his B.S. in Chemistry from Peking University and his Ph.D. in Chemistry from the University of Wisconsin–Madison. In collaboration with Prof. W. E. Moerner’s lab, he developed and applied a high-resolution, reagent-based DNA imaging platform, Oligo-LiveFISH, to investigate 3D chromatin dynamics in live cells. His current research focuses on applying Oligo-LiveFISH to study various biological questions such as the relationship between the 3D genome and gene regulation in real time, as well as investigating the dynamic process of DNA repair.
-Yang Xie is currently a Ph.D. candidate in the Bing Ren lab at UC San Diego. His graduate research focuses on developing high-throughput single-cell sequencing techniques to explore the epigenomic diversity of mammalian brains. Utilizing these new methods, he aims to uncover how the epigenomic dysregulation contributes to neurodisorders and diseases.
-===== HOW TO Join the Webinar =====
 The Webinar Series will be on the **4th Friday of each month from 8am-9am Pacific Time, 11am-12pm Eastern Time.**
-DN OH is inviting you to a scheduled Zoom meeting.
+**4DN OH is inviting you to a scheduled Zoom meeting.**
 Topic: 4DN Scientific Webinar\\ Please download and import the following iCalendar (.ics) files to your calendar system.\\ Monthly: [[https://4dnucleome-org.zoom.us/meeting/tZ0ufu2trzMrG9SNYBoxiO0YxjK3-LEvoHWL/ics?icsToken=98tyKuGhrTIuH9WdsRiHRpx5A4r4LO_zmFxcjfpusibHDDhaTVPPLuhpYf9TNc7f|https://4dnucleome-org.zoom.us/meeting/tZ0ufu2trzMrG9SNYBoxiO0YxjK3-LEvoHWL/ics?icsToken=98tyKuGhrTIuH9WdsRiHRpx5A4r4LO_zmFxcjfpusibHDDhaTVPPLuhpYf9TNc7f]]
@@ Line 95: / Line 91: @@
 <font 16px/inherit;;inherit;;inherit>**Next Scientific Webinar Presentation**</font>
-**When: June 28, 2024**
-**Moderator: Ting Wang**
-  * Presenter from **R. David Hawkins'****s team **
-  * Presenter from **Huaiying Zhang****'s**  team

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