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--- 4dn:phase2:scientific_webinar [2025/04/22 16:21]
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+++ 4dn:phase2:scientific_webinar [2025/08/22 08:04] (current)
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@@ Line 5: / Line 5: @@
 **<font inherit/inherit;;#c0392b;;inherit>Scientific Webinar Calendar:</font> **  [[https://4dnucleome-org.zoom.us/meeting/tJEsc-ytrDksEtWNHy00h-5RmkNx7equ3Nca/ics?icsToken=98tyKuCtrz8vH9aXthGGRowMBY-gZ-_zpnpdj7dqsjf8U3BbL1bEO-lsKuV6Ac2D|click here]] to add all the Scientific Webinar events to your personal calendar
-<font inherit/inherit;;#c0392b;;inherit>**Scientific Webinar Assignments (2021-2024):**</font> [[http://docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing|docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing]]
+<font inherit/inherit;;#c0392b;;inherit>**Scientific Webinar Assignments (2021-2025):**</font> [[http://docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing|docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing]]
 ===== Mission =====
@@ Line 25: / Line 25: @@
 ===== Scientific Webinar Series slides presentations =====
-**October 25, 2024**
+**August 22, 2025**
-**Moderator: Sui Huang**
+**Zoom recording link**
-**Presenter: Natalie McArthur **//(Columbia University)//** - //"// **//**The Molecular Basis of Solid-Phase Separation in Olfactory Transcriptional Hubs** //**//" //**  ([[https://docs.google.com/presentation/d/15YnUuDbmfZQZr3Glfj0n39D3bVuznyQY/edit?usp=drive_link&ouid=105768913603538088409&rtpof=true&sd=true|Link to presenter slides]])
+**Moderator: Yuan Liu**
-**Presenter: Andy Chen **//(Stanford University) //**- ****//“Distinct regulation of Histone H1 gene expression within the histone locus body”//**  ([[https://docs.google.com/presentation/d/1Xh2mIanVY6Qp7DV_QWtH3cwOfpMdMq55/edit?usp=drive_link&ouid=105768913603538088409&rtpof=true&sd=true|Link to presenter slides]])
-  * Scientific Webinar presentations (Phase 1) can be found [[https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive|here]].
+**Presenter: Jodi Lee **//(University of California, San Francisco) //**-** //**"Predictive modeling to assess the role of 3D genome folding in human congenital heart disease"**//  ([[https://drive.google.com/file/d/11mB2tB0l9egVjxAfJckfR3CKb3hy0qxe/view?usp=sharing|Link to presenter slides]])
+**Presenter: Yanyu Zhu** //(Stanford University) //- **//“High-resolution Dynamic Imaging of Chromatin DNA Communication using Oligo-LiveFISH”//**  ([[https://docs.google.com/presentation/d/1o9bXE1ZnWB0bxaXBYzDf1GE14dgzolUx/edit?usp=drive_link&ouid=105768913603538088409&rtpof=true&sd=true|Link to presenter slides]])
+  * Scientific Webinar presentations (Phase 1) can be found [[https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive|here]].
   * Scientific Webinar presentations (Phase 2) can be found [[https://wiki.4dnucleome.org/4dn:phase2:scientific_webinar_archive|here]].
 ===== 4DN Scientific Webinar Series =====
-<font 16px/inherit;;inherit;;inherit>**October 25, 2024**</font>
+<font 16px/inherit;;inherit;;inherit>**August 22, 2025**</font>
 <font 14px/inherit;;inherit;;inherit>**8:00-8:30 am Pacific Time (20 minute presentation, 10 minute QA)**</font>
-{{:4dn:phase2:natalie_m.jpg?200}}
+**Jodi Lee**
-**Natalie McArthur**
+**Grad Student**
-**Staff Associate**
+[[jodi.lee@gladstone.ucsf.edu|]]
-**[[ngm2121@columbia.edu|]]**
+**Title: //“Predictive modeling to assess the role of 3D genome folding in human congenital heart disease”// **
+Jodi is a 4th year graduate student studying genetics in Dr. Katherine Pollard’s Lab at the University of California, San Francisco. Jodi’s research focuses on creating and working with deep learning models to study the complex DNA sequence grammar regulating the genome. Currently, she is leveraging Cardiac-Akita, a DNA sequence to 3D genome folding deep learning model, to predict how genetic variants associated with congenital heart defects disrupt 3D genome contacts.
-**Title: //“// **//**The Molecular Basis of Solid-Phase Separation in Olfactory Transcriptional Hubs** //**//"//**  Natalie is a staff associate and recent Ph.D. graduate from the Lomvardas Lab at Columbia University. Natalie's thesis research is focused on uncovering the biochemical basis of olfactory receptor transcriptional hubs in olfactory sensory neurons. Before starting graduate school at Columbia University Natalie's undergraduate research was focused on the relationship between structure and function of heat shock proteins.
 <font 14px/inherit;;inherit;;inherit>**8:30-9:00 am Pacific Time (20 minute presentation, 10 minute QA)**</font>
-{{:4dn:phase2:andy.jpg?200}}
+**Yanyu Zhu**
-**Andy Chen**
+**Postdoctoral Researcher**
-**Ph.D. candidate**
+[[yanyuzhu@stanford.edu|]]
-**[[yhc@stanford.edu|]]**
+**Title: //“High-resolution Dynamic Imaging of Chromatin DNA Communication using Oligo-LiveFISH”// **
-**Title: //“// **//**Regulation of immune signal integration and memory by 3-dimensional genome** //**//”//**  Andy Chen is a physician-scientist and a Ph.D. candidate in Bioengineering at Stanford University, advised by Dr. Ansuman Satpathy. His research focuses on applying high-throughput genomics, and computation to study immune system principles in infection and cancer. Andy holds a B.S. in Physics, an M.D. from National Cheng Kung University in Taiwan.
+Yanyu Zhu is a postdoctoral researcher in Prof. Stanley Qi’s Lab in the Department of Bioengineering at Stanford University. He obtained his B.S. in Chemistry from Peking University and his Ph.D. in Chemistry from the University of Wisconsin–Madison. In collaboration with Prof. W. E. Moerner’s lab, he developed and applied a high-resolution, reagent-based DNA imaging platform, Oligo-LiveFISH, to investigate 3D chromatin dynamics in live cells. His current research focuses on applying Oligo-LiveFISH to study various biological questions such as the relationship between the 3D genome and gene regulation in real time, as well as investigating the dynamic process of DNA repair.
-===== HOW TO Join the Webinar =====
 The Webinar Series will be on the **4th Friday of each month from 8am-9am Pacific Time, 11am-12pm Eastern Time.**
-DN OH is inviting you to a scheduled Zoom meeting.
+**4DN OH is inviting you to a scheduled Zoom meeting.**
 Topic: 4DN Scientific Webinar\\ Please download and import the following iCalendar (.ics) files to your calendar system.\\ Monthly: [[https://4dnucleome-org.zoom.us/meeting/tZ0ufu2trzMrG9SNYBoxiO0YxjK3-LEvoHWL/ics?icsToken=98tyKuGhrTIuH9WdsRiHRpx5A4r4LO_zmFxcjfpusibHDDhaTVPPLuhpYf9TNc7f|https://4dnucleome-org.zoom.us/meeting/tZ0ufu2trzMrG9SNYBoxiO0YxjK3-LEvoHWL/ics?icsToken=98tyKuGhrTIuH9WdsRiHRpx5A4r4LO_zmFxcjfpusibHDDhaTVPPLuhpYf9TNc7f]]
@@ Line 89: / Line 91: @@
 <font 16px/inherit;;inherit;;inherit>**Next Scientific Webinar Presentation**</font>
-**When: January 24, 2025**
-**Moderator: **
-  * Presenter from **Tomoko Yamada****'s team **
-  * Presenter from **Sheng Zhong****'s**  team

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