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--- 4dn:phase2:scientific_webinar [2025/05/21 07:43]
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+++ 4dn:phase2:scientific_webinar [2025/08/22 08:04] (current)
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@@ Line 5: / Line 5: @@
 **<font inherit/inherit;;#c0392b;;inherit>Scientific Webinar Calendar:</font> **  [[https://4dnucleome-org.zoom.us/meeting/tJEsc-ytrDksEtWNHy00h-5RmkNx7equ3Nca/ics?icsToken=98tyKuCtrz8vH9aXthGGRowMBY-gZ-_zpnpdj7dqsjf8U3BbL1bEO-lsKuV6Ac2D|click here]] to add all the Scientific Webinar events to your personal calendar
-<font inherit/inherit;;#c0392b;;inherit>**Scientific Webinar Assignments (2021-2024):**</font> [[http://docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing|docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing]]
+<font inherit/inherit;;#c0392b;;inherit>**Scientific Webinar Assignments (2021-2025):**</font> [[http://docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing|docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing]]
 ===== Mission =====
@@ Line 25: / Line 25: @@
 ===== Scientific Webinar Series slides presentations =====
-**May 23, 2025**
+**August 22, 2025**
 **Zoom recording link**
-**Moderator: Sheng Zhong**
+**Moderator: Yuan Liu**
-**Presenter: Jesse Handler **//(Johns Hopkins University School of Medicine) - **"A genomic axis underlying liver colonization in PDAC with implications for metastasis risk prediction and interception"**//  (Link to presenter slides)
+**Presenter: Jodi Lee **//(University of California, San Francisco) //**-** //**"Predictive modeling to assess the role of 3D genome folding in human congenital heart disease"**//  ([[https://drive.google.com/file/d/11mB2tB0l9egVjxAfJckfR3CKb3hy0qxe/view?usp=sharing|Link to presenter slides]])
-**Presenter: Mrinmoy Pal **//(Helmholtz Munich) //-//** “The establishment of nuclear organization in mouse embryos is orchestrated by multiple epigenetic pathways”**//  (Link to presenter slides)
+**Presenter: Yanyu Zhu** //(Stanford University) //- **//“High-resolution Dynamic Imaging of Chromatin DNA Communication using Oligo-LiveFISH”//**  ([[https://docs.google.com/presentation/d/1o9bXE1ZnWB0bxaXBYzDf1GE14dgzolUx/edit?usp=drive_link&ouid=105768913603538088409&rtpof=true&sd=true|Link to presenter slides]])
   * Scientific Webinar presentations (Phase 1) can be found [[https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive|here]].
@@ Line 40: / Line 40: @@
 ===== 4DN Scientific Webinar Series =====
-<font 16px/inherit;;inherit;;inherit>**May 23, 2025**</font>
+<font 16px/inherit;;inherit;;inherit>**August 22, 2025**</font>
 <font 14px/inherit;;inherit;;inherit>**8:00-8:30 am Pacific Time (20 minute presentation, 10 minute QA)**</font>
-{{:4dn:phase2:jhhopkinsheadshot.jpg?nolink&200x200}}
+**Jodi Lee**
-**Jesse Handler**
+**Grad Student**
-**Fellow**
+[[jodi.lee@gladstone.ucsf.edu|]]
-[[jhandle2@jh.edu|]]
+**Title: //“Predictive modeling to assess the role of 3D genome folding in human congenital heart disease”// **
-**Title: //“A genomic axis underlying liver colonization in PDAC with implications for metastasis risk prediction and interception”// **
+Jodi is a 4th year graduate student studying genetics in Dr. Katherine Pollard’s Lab at the University of California, San Francisco. Jodi’s research focuses on creating and working with deep learning models to study the complex DNA sequence grammar regulating the genome. Currently, she is leveraging Cardiac-Akita, a DNA sequence to 3D genome folding deep learning model, to predict how genetic variants associated with congenital heart defects disrupt 3D genome contacts.
-Jesse Handler is a physician-scientist focused on understanding and intercepting the progression of pancreatic and colorectal cancers. He is currently a fellow in the Kalhor Lab at Johns Hopkins University, where he integrates genomics, genome engineering, and computational approaches to study cancer evolution and metastasis. This fall, he will launch his own laboratory as a physician-scientist in GI oncology at Emory University. His research aims to uncover molecular mechanisms of metastasis and drug resistance and to translate these insights into therapeutic strategies.
+<font 14px/inherit;;inherit;;inherit>**8:30-9:00 am Pacific Time (20 minute presentation, 10 minute QA)**</font>
-{{:4dn:phase2:mrinmoypal_photo.jpeg?nolink&200x200}}
+**Yanyu Zhu**
-**Mrinmoy Pal**
+**Postdoctoral Researcher**
-**PhD**
+[[yanyuzhu@stanford.edu|]]
-[[mrinmoy.pal.1995@gmail.com|]]
+**Title: //“High-resolution Dynamic Imaging of Chromatin DNA Communication using Oligo-LiveFISH”// **
-**Title: //“The establishment of nuclear organization in mouse embryos is orchestrated by multiple epigenetic pathways”// **
+Yanyu Zhu is a postdoctoral researcher in Prof. Stanley Qi’s Lab in the Department of Bioengineering at Stanford University. He obtained his B.S. in Chemistry from Peking University and his Ph.D. in Chemistry from the University of Wisconsin–Madison. In collaboration with Prof. W. E. Moerner’s lab, he developed and applied a high-resolution, reagent-based DNA imaging platform, Oligo-LiveFISH, to investigate 3D chromatin dynamics in live cells. His current research focuses on applying Oligo-LiveFISH to study various biological questions such as the relationship between the 3D genome and gene regulation in real time, as well as investigating the dynamic process of DNA repair.
-Mrinmoy completed his BS-MS dual degree at the Indian Institute of Science Education and Research (IISER) Kolkata. He then moved to Germany to pursue his PhD in the laboratory of Maria-Elena Torres-Padilla at Helmholtz Munich, as a Marie Curie Early Stage Researcher. His research is focused on how nuclear organization and chromatin dynamics influence developmental processes in early mouse embryos.
-===== HOW TO Join the Webinar =====
 The Webinar Series will be on the **4th Friday of each month from 8am-9am Pacific Time, 11am-12pm Eastern Time.**
-DN OH is inviting you to a scheduled Zoom meeting.
+**4DN OH is inviting you to a scheduled Zoom meeting.**
 Topic: 4DN Scientific Webinar\\ Please download and import the following iCalendar (.ics) files to your calendar system.\\ Monthly: [[https://4dnucleome-org.zoom.us/meeting/tZ0ufu2trzMrG9SNYBoxiO0YxjK3-LEvoHWL/ics?icsToken=98tyKuGhrTIuH9WdsRiHRpx5A4r4LO_zmFxcjfpusibHDDhaTVPPLuhpYf9TNc7f|https://4dnucleome-org.zoom.us/meeting/tZ0ufu2trzMrG9SNYBoxiO0YxjK3-LEvoHWL/ics?icsToken=98tyKuGhrTIuH9WdsRiHRpx5A4r4LO_zmFxcjfpusibHDDhaTVPPLuhpYf9TNc7f]]
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 <font 16px/inherit;;inherit;;inherit>**Next Scientific Webinar Presentation**</font>
-**When: June 27, 2025**
-**Moderator: Yin Shen**
-  * Presenter from **Wenbo Li's team**
-  * Presenter from **Danwei Huangfu (contact), Effie Apostolou, Christina Leslie's**  team

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