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4dn:phase2:working_groups:4dnsc4all [2022/07/19 08:23] lbintu [Primary Experimental Systems – We aim to inclusively implement the primary technologies mentioned above across the following three physiologically important systems:] |
4dn:phase2:working_groups:4dnsc4all [2025/04/22 16:21] (current) |
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| **4DN Calendar: ** [[https://wiki.4dnucleome.org/4dn:calendar_4dn|https://wiki.4dnucleome.org/4dn:calendar_4dn]] ([[https://ics.teamup.com/feed/ksrqw1wb728dtrxdvg/8852681.ics|click here]] to add this specific WG calendar to your personal calendar) | **4DN Calendar: ** [[https://wiki.4dnucleome.org/4dn:calendar_4dn|https://wiki.4dnucleome.org/4dn:calendar_4dn]] ([[https://ics.teamup.com/feed/ksrqw1wb728dtrxdvg/8852681.ics|click here]] to add this specific WG calendar to your personal calendar) | ||
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| + | **Previous meeting recordings: [[https://drive.google.com/drive/u/2/folders/152onkHbb_XwmR7z5d2GwiSq1I8LabaHH|https://drive.google.com/drive/u/2/folders/152onkHbb_XwmR7z5d2GwiSq1I8LabaHH]]** | ||
| **Zoom link:** [[https://4dnucleome-org.zoom.us/j/82077914018?pwd=RUxNcWoxeG11bEJEQjRZb3IydlZFdz09|https://4dnucleome-org.zoom.us/j/82077914018?pwd=RUxNcWoxeG11bEJEQjRZb3IydlZFdz09]] | **Zoom link:** [[https://4dnucleome-org.zoom.us/j/82077914018?pwd=RUxNcWoxeG11bEJEQjRZb3IydlZFdz09|https://4dnucleome-org.zoom.us/j/82077914018?pwd=RUxNcWoxeG11bEJEQjRZb3IydlZFdz09]] | ||
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| **Slack channel:** | **Slack channel:** | ||
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| ===== Plans and Documents ===== | ===== Plans and Documents ===== | ||
| - | Agenda and Minutes: | + | Agenda, Minutes, and Mission: |
| - | https://docs.google.com/document/d/1PuSPeug0qgnv_-DePvDLwhbaxyYvFzeqNv_eIpDp4pA/edit | + | [[https://docs.google.com/document/d/1PuSPeug0qgnv_-DePvDLwhbaxyYvFzeqNv_eIpDp4pA/edit|https://docs.google.com/document/d/1PuSPeug0qgnv_-DePvDLwhbaxyYvFzeqNv_eIpDp4pA/edit]] |
| - | ===== ===== | + | Meetings are on Thursdays, every other week: 10:00 – 11:00am PST (in 2022: July 28, August 11, August 25, etc). |
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| + | <font inherit/inherit;;#c0392b;;inherit>**Everyone who wants to learn more or contribute ideas, data, analysis is welcome!**</font> | ||
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| - | ===== Computational Analysis and Method Development Opportunities – Computational integration, analysis, and modeling should be at the forefront along with the experimental processes. Major deliverable will include software tools, benchmark datasets and metrics, and analysis workflows to establish the “navigable maps” of nuclear architecture: ===== | + | ===== Computational Analysis and Method Development Opportunities ===== |
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| + | Computational integration, analysis, and modeling should be at the forefront along with the experimental processes. Major deliverable will include software tools, benchmark datasets and metrics, and analysis workflows to establish the “navigable maps” of nuclear architecture: | ||
| * Algorithms for image analysis steps (fiducial localization, spot calling, segmentation, drift correction) and single-cell integrative analysis, including 3D genome feature detection (single-cell TADs/subTADs/bodies/compartments/loops) | * Algorithms for image analysis steps (fiducial localization, spot calling, segmentation, drift correction) and single-cell integrative analysis, including 3D genome feature detection (single-cell TADs/subTADs/bodies/compartments/loops) | ||
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| * Modeling approaches to assess mechanisms of nuclear structure in space and time | * Modeling approaches to assess mechanisms of nuclear structure in space and time | ||
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4dn/phase2/working_groups/4dnsc4all.1658244183.txt.gz · Last modified: 2025/04/22 16:21 (external edit)