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4dn:phase2:working_groups:imaging:imaging_omics_exchange_data_formats
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4dn:phase2:working_groups:imaging:imaging_omics_exchange_data_formats [2020/12/21 10:30] rcalandrelli created |
4dn:phase2:working_groups:imaging:imaging_omics_exchange_data_formats [2025/04/22 16:21] (current) |
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| - | ====== FISH Omics Standards ====== | + | ====== ImagingOmics: Exchange formats for genomic imaging results ====== |
| - | Point people/organizers: Alistair Boettiger, Steve Wang | + | This sub-group has now been merged with the [[https://wiki.4dnucleome.org/4dn:phase2:working_groups:imaging:genomic_single_molecule_localization_data_formats|Genomic Single-Molecule Localization Data Formats]] sub-group of the Imaging Working Group. |
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| + | **Point people/organizers:** //Alistair Boettiger, Steve Wang// | ||
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| + | <font inherit/inherit;;#c0392b;;inherit>**4DN Google Drive folder:**</font> [[https://drive.google.com/drive/folders/1Rzn7_U_Id81LIHdu0ECcQ5Wc7sBLTqvW?usp=sharing|https://drive.google.com/drive/folders/1Rzn7_U_Id81LIHdu0ECcQ5Wc7sBLTqvW?usp=sharing]] | ||
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| + | **<font inherit/inherit;;#c0392b;;inherit>4DN Calendar:</font> ** [[https://wiki.4dnucleome.org/4dn:calendar_4dn|https://wiki.4dnucleome.org/4dn:calendar_4dn]] | ||
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| + | <font inherit/inherit;;#c0392b;;inherit>**Agenda/Minutes:**</font> [[https://docs.google.com/document/d/1AadO9SjxAEjflAfYq5tdQ1u0OkJtAa_xBhQOk97f8Rk/edit?usp=sharing|https://docs.google.com/document/d/1AadO9SjxAEjflAfYq5tdQ1u0OkJtAa_xBhQOk97f8Rk/edit?usp=sharing]] | ||
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| + | <font inherit/inherit;;#c0392b;;inherit>**Meeting attendee spreadsheet:**</font> [[https://docs.google.com/spreadsheets/d/1Q5PRijFtDwXanWL3caU8LHF1iouKhNR0w7HjWw-9PKg/edit?usp=sharing|https://docs.google.com/spreadsheets/d/1Q5PRijFtDwXanWL3caU8LHF1iouKhNR0w7HjWw-9PKg/edit?usp=sharing]] | ||
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| + | <font inherit/inherit;;#c0392b;;inherit>**Email list: **</font>[[image@4dnucleome.org|]] | ||
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| + | <font inherit/inherit;;#c0392b;;inherit>**Slack channel: **</font>swg-imaging-omics-exchange-data-formats | ||
| ===== Mission Statement ===== | ===== Mission Statement ===== | ||
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| + | This sub-group of the Imaging Working Group will develop recommended data formats and metadata specifications for sharing 3D chromatin folding traces obtained from multiplexed DNA FISH and other in-situ imaging-based omics approaches, with the flexibility to include additional multi-omic imaging data to be mapped to these structural data, such as RNA expression, protein distribution, cell morphology, or tissue coordinates. | ||
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| + | ===== Output ===== | ||
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| + | ==== FISH Omics Format for Chromating Tracing (FOF-CT) ==== | ||
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| + | The first output of this sub-group is the proposed FISH Omics Format for Chromating Tracing (FOF-CT). We encourage the community to provide feedback ahead to approval from the November Steering Committee meeting. The format is available for comments in two versions: | ||
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| + | * [[https://docs.google.com/document/d/1z7rIYsQnbeS7y_SMuwoa8qsWKBD_BpV88vR79WiH_XI/edit?usp=sharing|General description]] | ||
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| + | * [[https://docs.google.com/spreadsheets/d/1GvqokS5w8Yw2tAngsqDC8YcLdRha5cGr/edit?usp=sharing&ouid=101141664079197066125&rtpof=true&sd=true|Specifications]] | ||
4dn/phase2/working_groups/imaging/imaging_omics_exchange_data_formats.1608575425.txt.gz · Last modified: 2025/04/22 16:21 (external edit)