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4dn:phase2:working_groups:imaging:imaging_omics_exchange_data_formats
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4dn:phase2:working_groups:imaging:imaging_omics_exchange_data_formats [2021/07/20 08:53] oh |
4dn:phase2:working_groups:imaging:imaging_omics_exchange_data_formats [2025/04/22 16:21] (current) |
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| ====== ImagingOmics: Exchange formats for genomic imaging results ====== | ====== ImagingOmics: Exchange formats for genomic imaging results ====== | ||
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| + | This sub-group has now been merged with the [[https://wiki.4dnucleome.org/4dn:phase2:working_groups:imaging:genomic_single_molecule_localization_data_formats|Genomic Single-Molecule Localization Data Formats]] sub-group of the Imaging Working Group. | ||
| **Point people/organizers:** //Alistair Boettiger, Steve Wang// | **Point people/organizers:** //Alistair Boettiger, Steve Wang// | ||
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| <font inherit/inherit;;#c0392b;;inherit>**Meeting attendee spreadsheet:**</font> [[https://docs.google.com/spreadsheets/d/1Q5PRijFtDwXanWL3caU8LHF1iouKhNR0w7HjWw-9PKg/edit?usp=sharing|https://docs.google.com/spreadsheets/d/1Q5PRijFtDwXanWL3caU8LHF1iouKhNR0w7HjWw-9PKg/edit?usp=sharing]] | <font inherit/inherit;;#c0392b;;inherit>**Meeting attendee spreadsheet:**</font> [[https://docs.google.com/spreadsheets/d/1Q5PRijFtDwXanWL3caU8LHF1iouKhNR0w7HjWw-9PKg/edit?usp=sharing|https://docs.google.com/spreadsheets/d/1Q5PRijFtDwXanWL3caU8LHF1iouKhNR0w7HjWw-9PKg/edit?usp=sharing]] | ||
| - | <font inherit/inherit;;#c0392b;;inherit>**Email list: **</font> | + | <font inherit/inherit;;#c0392b;;inherit>**Email list: **</font>[[image@4dnucleome.org|]] |
| <font inherit/inherit;;#c0392b;;inherit>**Slack channel: **</font>swg-imaging-omics-exchange-data-formats | <font inherit/inherit;;#c0392b;;inherit>**Slack channel: **</font>swg-imaging-omics-exchange-data-formats | ||
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| This sub-group of the Imaging Working Group will develop recommended data formats and metadata specifications for sharing 3D chromatin folding traces obtained from multiplexed DNA FISH and other in-situ imaging-based omics approaches, with the flexibility to include additional multi-omic imaging data to be mapped to these structural data, such as RNA expression, protein distribution, cell morphology, or tissue coordinates. | This sub-group of the Imaging Working Group will develop recommended data formats and metadata specifications for sharing 3D chromatin folding traces obtained from multiplexed DNA FISH and other in-situ imaging-based omics approaches, with the flexibility to include additional multi-omic imaging data to be mapped to these structural data, such as RNA expression, protein distribution, cell morphology, or tissue coordinates. | ||
| - | **[[https://docs.google.com/document/d/1z7rIYsQnbeS7y_SMuwoa8qsWKBD_BpV88vR79WiH_XI/edit|FISH omics format]]** | + | ===== Output ===== |
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| + | ==== FISH Omics Format for Chromating Tracing (FOF-CT) ==== | ||
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| + | The first output of this sub-group is the proposed FISH Omics Format for Chromating Tracing (FOF-CT). We encourage the community to provide feedback ahead to approval from the November Steering Committee meeting. The format is available for comments in two versions: | ||
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| + | * [[https://docs.google.com/document/d/1z7rIYsQnbeS7y_SMuwoa8qsWKBD_BpV88vR79WiH_XI/edit?usp=sharing|General description]] | ||
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| + | * [[https://docs.google.com/spreadsheets/d/1GvqokS5w8Yw2tAngsqDC8YcLdRha5cGr/edit?usp=sharing&ouid=101141664079197066125&rtpof=true&sd=true|Specifications]] | ||
4dn/phase2/working_groups/imaging/imaging_omics_exchange_data_formats.1626796415.txt.gz · Last modified: 2025/04/22 16:21 (external edit)