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4dn:phase2:working_groups:imaging:imaging_omics_exchange_data_formats [2021/07/20 08:55] oh |
4dn:phase2:working_groups:imaging:imaging_omics_exchange_data_formats [2025/04/22 16:21] (current) |
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====== ImagingOmics: Exchange formats for genomic imaging results ====== | ====== ImagingOmics: Exchange formats for genomic imaging results ====== | ||
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+ | This sub-group has now been merged with the [[https://wiki.4dnucleome.org/4dn:phase2:working_groups:imaging:genomic_single_molecule_localization_data_formats|Genomic Single-Molecule Localization Data Formats]] sub-group of the Imaging Working Group. | ||
**Point people/organizers:** //Alistair Boettiger, Steve Wang// | **Point people/organizers:** //Alistair Boettiger, Steve Wang// | ||
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This sub-group of the Imaging Working Group will develop recommended data formats and metadata specifications for sharing 3D chromatin folding traces obtained from multiplexed DNA FISH and other in-situ imaging-based omics approaches, with the flexibility to include additional multi-omic imaging data to be mapped to these structural data, such as RNA expression, protein distribution, cell morphology, or tissue coordinates. | This sub-group of the Imaging Working Group will develop recommended data formats and metadata specifications for sharing 3D chromatin folding traces obtained from multiplexed DNA FISH and other in-situ imaging-based omics approaches, with the flexibility to include additional multi-omic imaging data to be mapped to these structural data, such as RNA expression, protein distribution, cell morphology, or tissue coordinates. | ||
- | **[[https://docs.google.com/document/d/1z7rIYsQnbeS7y_SMuwoa8qsWKBD_BpV88vR79WiH_XI/edit|FISH omics format]]** | + | ===== Output ===== |
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+ | ==== FISH Omics Format for Chromating Tracing (FOF-CT) ==== | ||
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+ | The first output of this sub-group is the proposed FISH Omics Format for Chromating Tracing (FOF-CT). We encourage the community to provide feedback ahead to approval from the November Steering Committee meeting. The format is available for comments in two versions: | ||
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+ | * [[https://docs.google.com/document/d/1z7rIYsQnbeS7y_SMuwoa8qsWKBD_BpV88vR79WiH_XI/edit?usp=sharing|General description]] | ||
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+ | * [[https://docs.google.com/spreadsheets/d/1GvqokS5w8Yw2tAngsqDC8YcLdRha5cGr/edit?usp=sharing&ouid=101141664079197066125&rtpof=true&sd=true|Specifications]] | ||