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4dn:phase2:working_groups:imaging [2022/03/11 14:44] rcalandrelli |
4dn:phase2:working_groups:imaging [2025/04/22 16:21] (current) |
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| ====== Imaging ====== | ====== Imaging ====== | ||
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| - | {{4dn:phase2:working_groups:imaging:image.jpg}} | ||
| **Point people/organizers:** //Lacra Bintu and Caterina Strambio De Castillia// | **Point people/organizers:** //Lacra Bintu and Caterina Strambio De Castillia// | ||
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| <font inherit/Arial,Helvetica,sans-serif;;inherit;;inherit>2) As a coordination platform to initiate sub-groups (SWG) that focuses on concrete barriers related to imaging within 4DN, as a discussion forum about solutions and as a place for such SWG to report the outcome of their work before implementing policies via the DCIC. Subgroups can have any format, should be led by their initiators, and typically aim to solve problems (or define clear strategies for the resolution of more complex problems) on a short time scale of 3-6 months. The IWG encourages all 4DN members to initiate SWGs based on their interests and needs. SWG should explicitly be open to being initiated by postdocs and staff scientists.</font> | <font inherit/Arial,Helvetica,sans-serif;;inherit;;inherit>2) As a coordination platform to initiate sub-groups (SWG) that focuses on concrete barriers related to imaging within 4DN, as a discussion forum about solutions and as a place for such SWG to report the outcome of their work before implementing policies via the DCIC. Subgroups can have any format, should be led by their initiators, and typically aim to solve problems (or define clear strategies for the resolution of more complex problems) on a short time scale of 3-6 months. The IWG encourages all 4DN members to initiate SWGs based on their interests and needs. SWG should explicitly be open to being initiated by postdocs and staff scientists.</font> | ||
| - | ===== Major Achievements: ===== | ||
| - | ==== Reporting and Reproducibility for Microscopy ==== | + | ==== Microscopy Metadata is essential for reporting and reproducibility in microscopy ==== |
| - | === Work from IWG has been featured on a FOCUS issue in Nature Methods in December === | + | === Major Achievements: === |
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| + | Work from IWG has been featured in a FOCUS issue on Nature Methods in December 2021 | ||
| * Reporting and Reproducibility in Microscopy –> [[https://www.nature.com/collections/djiciihhjh|FOCUS ISSUE]] | * Reporting and Reproducibility in Microscopy –> [[https://www.nature.com/collections/djiciihhjh|FOCUS ISSUE]] | ||
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| * Community-driven 4DN-BINA-OME [[https://doi.org/10.1038/s41592-021-01327-9|Microscopy Metadata Specifications]] | * Community-driven 4DN-BINA-OME [[https://doi.org/10.1038/s41592-021-01327-9|Microscopy Metadata Specifications]] | ||
| - | * [[https://doi.org/10.1038/s41592-021-01315-z|Micro-Meta App]] tool for collecting Microscopy Metadata (now in use on the [[https://data.4dnucleome.org/tools/micro-meta-app|4DN Data Portal]]) | + | |
| + | * [[https://doi.org/10.1038/s41592-021-01315-z|Micro-Meta App]] tool for collecting Microscopy Metadata (now in use on the [[https://data.4dnucleome.org/tools/micro-meta-app|4DN Data]][[https://data.4dnucleome.org/tools/micro-meta-app| Portal]]) | ||
| ==== Exchange data formats for imaging experiments ==== | ==== Exchange data formats for imaging experiments ==== | ||
4dn/phase2/working_groups/imaging.1647038691.txt.gz · Last modified: 2025/04/22 16:21 (external edit)