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4dn:phase2:working_groups:integrating_imaging_omics
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4dn:phase2:working_groups:integrating_imaging_omics [2021/02/26 08:50] frank_alber [Mission Statement] |
4dn:phase2:working_groups:integrating_imaging_omics [2025/04/22 16:21] (current) |
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| <font inherit/inherit;;#c0392b;;inherit>**Agenda/minutes:**</font> [[https://docs.google.com/document/d/1-cgXP2sBcvZMT-Ap5Z5wzSYteRJnyAvQTsShsu9Wgw0/edit?usp=sharing|https://docs.google.com/document/d/1-cgXP2sBcvZMT-Ap5Z5wzSYteRJnyAvQTsShsu9Wgw0/edit?usp=sharing]] | <font inherit/inherit;;#c0392b;;inherit>**Agenda/minutes:**</font> [[https://docs.google.com/document/d/1-cgXP2sBcvZMT-Ap5Z5wzSYteRJnyAvQTsShsu9Wgw0/edit?usp=sharing|https://docs.google.com/document/d/1-cgXP2sBcvZMT-Ap5Z5wzSYteRJnyAvQTsShsu9Wgw0/edit?usp=sharing]] | ||
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| + | <font inherit/inherit;;#c0392b;;inherit>**Schedule for lightning talks:**</font> [[https://docs.google.com/document/d/1sR0aNxYZIw_0MtHBFaHS_O9fkKiAyNDXow31r-JN6PU/edit?usp=sharing|https://docs.google.com/document/d/1sR0aNxYZIw_0MtHBFaHS_O9fkKiAyNDXow31r-JN6PU/edit?usp=sharing]] | ||
| <font inherit/inherit;;#c0392b;;inherit>**Meeting attendee spreadsheet: **</font>[[https://docs.google.com/spreadsheets/d/1pUjpEu0NoodCX4pHtf4lYxJn2DdhVWxwrThaiHYUy2o/edit?usp=sharing|https://docs.google.com/spreadsheets/d/1pUjpEu0NoodCX4pHtf4lYxJn2DdhVWxwrThaiHYUy2o/edit?usp=sharing]] | <font inherit/inherit;;#c0392b;;inherit>**Meeting attendee spreadsheet: **</font>[[https://docs.google.com/spreadsheets/d/1pUjpEu0NoodCX4pHtf4lYxJn2DdhVWxwrThaiHYUy2o/edit?usp=sharing|https://docs.google.com/spreadsheets/d/1pUjpEu0NoodCX4pHtf4lYxJn2DdhVWxwrThaiHYUy2o/edit?usp=sharing]] | ||
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| <font inherit/inherit;;#c0392b;;inherit>**Slack channel:**</font> #wg-integrating-imaging-omics | <font inherit/inherit;;#c0392b;;inherit>**Slack channel:**</font> #wg-integrating-imaging-omics | ||
| - | <font inherit/inherit;;#c0392b;;inherit>**Landing page at the 4DN portal:**</font> [[https://data.4dnucleome.org/4DN-AICS-Collaboration|https://data.4dnucleome.org/4DN-AICS-Collaboration]] | + | <font inherit/inherit;;#c0392b;;inherit>**Landing page at the 4DN Data Portal:**</font> [[https://data.4dnucleome.org/4DN-AICS-Collaboration|https://data.4dnucleome.org/4DN-AICS-Collaboration]] |
| ===== Mission Statement ===== | ===== Mission Statement ===== | ||
| - | <font 11pt/inherit;;inherit;;inherit><font inherit/";inherit;;inherit>The working group’s efforts will be devoted to developing an integrative framework for combining imaging modalities with single cell and ensemble genomics data to study the changes in global cellular organization during biological processes, such as cell cycle, differentiation or perturbations.</font></font> | + | <font inherit/Arial,Helvetica,sans-serif;;inherit;;inherit><font 11pt/inherit;;inherit;;inherit>The working group’s efforts will be devoted to developing an integrative framework for combining imaging modalities with single cell and ensemble genomics data to study the changes in global cellular organization during biological processes, such as cell cycle, differentiation or perturbations.</font></font> |
| - | <font 11pt/inherit;;inherit;;inherit><font inherit/";inherit;;inherit>The working group has two main objectives:</font></font> | + | <font inherit/Arial,Helvetica,sans-serif;;inherit;;inherit><font 11pt/inherit;;inherit;;inherit>The working group has two main objectives:</font></font> |
| - | - <font 11pt/inherit;;inherit;;inherit><font inherit/";inherit;;inherit>An explicit goal of this working group is to provide a platform and foster interactions between researchers from different disciplines—imaging, genomics and computational modeling—to work jointly on breaking the barriers in integrating imaging with omics data types. The working group will develop strategies for data integration, discuss common practices and compare different integration strategies. The strategies developed by this objective will be generally useful for a variety of 4DN projects and data types.</font></font> | + | - <font inherit/Arial,Helvetica,sans-serif;;inherit;;inherit><font 11pt/inherit;;inherit;;inherit>An explicit goal of this working group is to provide a platform and foster interactions between researchers from different disciplines—imaging, genomics and computational modeling—to work jointly on breaking the barriers in integrating imaging with omics data types. The working group will develop strategies for data integration, discuss common practices and compare different integration strategies. The strategies developed by this objective will be generally useful for a variety of 4DN projects and data types.</font></font> |
| - | - <font 11pt/inherit;;inherit;;inherit><font inherit/";inherit;;inherit>The second objective is to coordinate a joint effort in generating a variety of genomics and imaging data sets for a specific target system. Here, we focus on the WTC11 cell line and expand the joint effort of this working group from phase 1 in generating and analyzing a variety of imaging and genomics data. The initial focus on one cell type will guarantee the production of a rich data set, which will be applied to integration strategies developed in objective 1.</font></font> | + | - <font inherit/Arial,Helvetica,sans-serif;;inherit;;inherit><font 11pt/inherit;;inherit;;inherit>The second objective is to coordinate a joint effort in generating a variety of genomics and imaging data sets for a specific target system. Here, we focus on the WTC11 cell line and expand the joint effort of this working group from phase 1 in generating and analyzing a variety of imaging and genomics data. The initial focus on one cell type will guarantee the production of a rich data set, which will be applied to integration strategies developed in objective 1.</font></font> |
4dn/phase2/working_groups/integrating_imaging_omics.1614358218.txt.gz · Last modified: 2025/04/22 16:21 (external edit)