User Tools
4dn:phase2:working_groups:jawg_sandbox
Differences
This shows you the differences between two versions of the page.
| Both sides previous revision Previous revision Next revision | Previous revision | ||
|
4dn:phase2:working_groups:jawg_sandbox [2020/07/02 10:05] Ran [Nuclear organization] |
4dn:phase2:working_groups:jawg_sandbox [2025/04/22 16:21] (current) |
||
|---|---|---|---|
| Line 5: | Line 5: | ||
| - | ==== Analysis of 3D genome structure population (Alber) ==== | + | ===== Analysis of 3D genome structure population (Alber) ===== |
| Using our population-based genome structure modeling protocol described [[https://www.nature.com/articles/nprot.2018.008|here]], we generated populations of 3D genome structures for H1 and HFF (10,000 models each) at 200-kb resolution. We used the Hi-C data available on the 4DN data portal (H1: [[https://data.4dnucleome.org/experiment-set-replicates/4DNES2M5JIGV/|4DNES2M5JIGV]], HFF: [[https://data.4dnucleome.org/experiment-set-replicates/4DNES2R6PUEK/|4DNES2R6PUEK]]). | Using our population-based genome structure modeling protocol described [[https://www.nature.com/articles/nprot.2018.008|here]], we generated populations of 3D genome structures for H1 and HFF (10,000 models each) at 200-kb resolution. We used the Hi-C data available on the 4DN data portal (H1: [[https://data.4dnucleome.org/experiment-set-replicates/4DNES2M5JIGV/|4DNES2M5JIGV]], HFF: [[https://data.4dnucleome.org/experiment-set-replicates/4DNES2R6PUEK/|4DNES2R6PUEK]]). | ||
| Line 22: | Line 22: | ||
| - | ==== Loop calls ==== | ||
| - | |||
| - | |||
| - | ==== Tad calls ==== | ||
| - | |||
| - | ==== ==== | ||
| - | |||
| - | |||
| - | ==== Compartment calls ==== | ||
| - | |||
| - | ==== ==== | ||
4dn/phase2/working_groups/jawg_sandbox.1593709519.txt.gz · Last modified: 2025/04/22 16:21 (external edit)