This sub-group has now been merged with the Genomic Single-Molecule Localization Data Formats sub-group of the Imaging Working Group.
Point people/organizers: Alistair Boettiger, Steve Wang
4DN Google Drive folder: https://drive.google.com/drive/folders/1Rzn7_U_Id81LIHdu0ECcQ5Wc7sBLTqvW?usp=sharing
4DN Calendar: https://wiki.4dnucleome.org/4dn:calendar_4dn
Agenda/Minutes: https://docs.google.com/document/d/1AadO9SjxAEjflAfYq5tdQ1u0OkJtAa_xBhQOk97f8Rk/edit?usp=sharing
Meeting attendee spreadsheet: https://docs.google.com/spreadsheets/d/1Q5PRijFtDwXanWL3caU8LHF1iouKhNR0w7HjWw-9PKg/edit?usp=sharing
Email list: image@4dnucleome.org
Slack channel: swg-imaging-omics-exchange-data-formats
This sub-group of the Imaging Working Group will develop recommended data formats and metadata specifications for sharing 3D chromatin folding traces obtained from multiplexed DNA FISH and other in-situ imaging-based omics approaches, with the flexibility to include additional multi-omic imaging data to be mapped to these structural data, such as RNA expression, protein distribution, cell morphology, or tissue coordinates.
The first output of this sub-group is the proposed FISH Omics Format for Chromating Tracing (FOF-CT). We encourage the community to provide feedback ahead to approval from the November Steering Committee meeting. The format is available for comments in two versions: