Agenda - - Schedule for future presentations - March 25: PLAC-seq/HiChIP standard presentation by Miao Yu - May 27th: GAM standard presentation by Ana Pombo lab - To be confirmed - in situ ChIA-PET from Ruan lab - Feature maps from Hi-C datasets - TSA-Seq. (Andy mentioned that they were trying to put out Version 2 protocol) - sciHi-C (from Jay Shendure lab) - micro-C (data generated, submitted, not discussed) - Cut & Run (data generated, submitted, needs recommendation and approval) - Trac-loop - MARGI (from Sheng Zhong lab, data generated, submitted) - Need to look at the SC minutes to see which protocols are in production, and approved. (DNase-HiC, in situ HiC, DamID, repli-seq, ChIA-PET) - Additional techniques that have data submitted but need approval - Someone from DCIC can help. - Any additional omic standards to be discussed?\\ DCIC topic - what constitute a replicate set?\\ Protocol.io. Protocol hubs? \\ Action items - - for Bing and Erez the PIs for future presentations. - Make final recommendations for a few methods that have been discussed but not yet received final approval. ^Date^Experimental methods^Presenting groups| |~~TABLE_CELL_WRAP_START~~ 3/25/2019 ~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~ PLAC-seq/HiChIP ~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~ Ren ~~TABLE_CELL_WRAP_STOP~~| |~~TABLE_CELL_WRAP_START~~ 4/22/2019 ~~TABLE_CELL_WRAP_STOP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~| |~~TABLE_CELL_WRAP_START~~ 5/27/2019 ~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~ GAM ~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~ Pombo ~~TABLE_CELL_WRAP_STOP~~| |~~TABLE_CELL_WRAP_START~~ 6/24/2019 ~~TABLE_CELL_WRAP_STOP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~| |~~TABLE_CELL_WRAP_START~~ 7/22/2019 ~~TABLE_CELL_WRAP_STOP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~| |~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~| |~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~| |~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~| Table below was copied from previous document (circa. 2017) ^~~TABLE_CELL_WRAP_START~~ OMICS technologies ~~TABLE_CELL_WRAP_STOP~~^~~TABLE_CELL_WRAP_START~~ Practicing Group(s) ~~TABLE_CELL_WRAP_STOP~~^~~TABLE_CELL_WRAP_START~~ Presentation date (protocols need to be shared in advance) ~~TABLE_CELL_WRAP_STOP~~^~~TABLE_CELL_WRAP_START~~ Person in charge of presenting the protocols ~~TABLE_CELL_WRAP_STOP~~^~~TABLE_CELL_WRAP_START~~ Production ~~TABLE_CELL_WRAP_STOP~~| |~~TABLE_CELL_WRAP_START~~ PLAC-seq/HiChIP ~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~ Ren, Lis, Wysocka/Adelman, Cairns, Neugebauer/Steitz, Yue ~~TABLE_CELL_WRAP_STOP~~|~~CKG_TABLE_NBSP~~|~~TABLE_CELL_WRAP_START~~ Small working group to be formed by the practicing labs ~~TABLE_CELL_WRAP_STOP~~|~~CKG_TABLE_NBSP~~| |~~TABLE_CELL_WRAP_START~~ Micro-C ~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~ Rando ~~TABLE_CELL_WRAP_STOP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~| |~~TABLE_CELL_WRAP_START~~ DNase-HiC ~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~ Duan/Shendure, Disteche, Murry ~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~ Nov 13, 2017 ~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~ Ramani ~~TABLE_CELL_WRAP_STOP~~|~~CKG_TABLE_NBSP~~| |~~TABLE_CELL_WRAP_START~~ scHi-C combinatorial indexing ~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~ Duan/Shendure ~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~ Nov 13, 2017 ~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~ Ramani ~~TABLE_CELL_WRAP_STOP~~|~~CKG_TABLE_NBSP~~| |~~TABLE_CELL_WRAP_START~~ Single cell Hi-C ~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~ Fraser ~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~ March 12, 2018 ~~TABLE_CELL_WRAP_STOP~~|~~CKG_TABLE_NBSP~~|~~TABLE_CELL_WRAP_START~~ X ~~TABLE_CELL_WRAP_STOP~~| |~~TABLE_CELL_WRAP_START~~ Single nucleus HiC ~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~ Ren ~~TABLE_CELL_WRAP_STOP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~| |~~TABLE_CELL_WRAP_START~~ ATAC-see ~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~ Chang ~~TABLE_CELL_WRAP_STOP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~| |~~TABLE_CELL_WRAP_START~~ SPRITE ~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~ Gutman ~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~ Jan 22, 2018 ~~TABLE_CELL_WRAP_STOP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~| |~~TABLE_CELL_WRAP_START~~ GRO-seq ~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~ Lis, Adelman ~~TABLE_CELL_WRAP_STOP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~| |~~TABLE_CELL_WRAP_START~~ PRO-seq ~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~ Lis ~~TABLE_CELL_WRAP_STOP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~| |~~TABLE_CELL_WRAP_START~~ TCC ~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~ Chen ~~TABLE_CELL_WRAP_STOP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|~~TABLE_CELL_WRAP_START~~ X ~~TABLE_CELL_WRAP_STOP~~| |~~TABLE_CELL_WRAP_START~~ TSA-seq ~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~ Belmont ~~TABLE_CELL_WRAP_STOP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~| |~~TABLE_CELL_WRAP_START~~ CUT&RUN ~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~ Henikoff ~~TABLE_CELL_WRAP_STOP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~| |~~TABLE_CELL_WRAP_START~~ DamID ~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~ van Steensel ~~TABLE_CELL_WRAP_STOP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|~~TABLE_CELL_WRAP_START~~ X ~~TABLE_CELL_WRAP_STOP~~| |~~TABLE_CELL_WRAP_START~~ GAM ~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~ Pombo ~~TABLE_CELL_WRAP_STOP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~| |~~TABLE_CELL_WRAP_START~~ NAD-seq ~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~ Paul Kaufman lab ~~TABLE_CELL_WRAP_STOP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~| |~~TABLE_CELL_WRAP_START~~ TRAC-loop ~~TABLE_CELL_WRAP_STOP~~|~~TABLE_CELL_WRAP_START~~ KJ Zhao ~~TABLE_CELL_WRAP_STOP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|