==== Omics Data Standards WG - Minutes 08-22-2016 ====

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DCIC presentation about meta data (Powerpoint file available on [[4dn:phase1:working_groups:omics_data_standards|WG wiki here]])

  * Basic Experiment Metadata
      * Lab
      * Name, PI, Institute, ...
      * User
      * Name
      * Grant
      * Number, Title, …
      * Publication
      * Document
      * Biosource
      * Individual / Organism, Modification, Treatment, ...
      * Description
      * Data
      * Status
      * Alias
      * Accession
      * Type
      * Related Biosample
      * Biosample protocol variants
  * Cell-type related fields
  * Experiment Type Specific Fields
      * e.g. Hi-C related fields (crosslinking method, enzyme lot number, …)
  * Metadata on Raw Files
      * Name, Data, Status, Md5sum, …
  * How to define replicates (biological / technical)
  * Update schemas and submission worksheets on Google Docs
      * Schema: [[https://docs.google.com/document/d/15tuYHENH_xOvtlvToFJZMzm5BgYFjjKJ0-vSP7ODOG0/edit?usp=sharing|https://docs.google.com/document/d/15tuYHENH_xOvtlvToFJZMzm5BgYFjjKJ0-vSP7ODOG0/edit?usp=sharing]]
      * Submission worksheets: [[https://drive.google.com/open?id=0BzWrm37_zZHvanNLeE45TWZNdEk|https://drive.google.com/open?id=0BzWrm37_zZHvanNLeE45TWZNdEk]]

DATA FORMAT

  * Contacted ~17  investigators to survey different formats. They will perform the analysis in the next few weeks. Bill Noble Lab will present
  * We will focus in two formats: HiC and Cooler, Butler format will be mainly used in visualization only.

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