====== ImagingOmics: Exchange formats for genomic imaging results ======

This sub-group has now been merged with the [[https://wiki.4dnucleome.org/4dn:phase2:working_groups:imaging:genomic_single_molecule_localization_data_formats|Genomic Single-Molecule Localization Data Formats]] sub-group of the Imaging Working Group.

**Point people/organizers:** //Alistair Boettiger, Steve Wang//

<font inherit/inherit;;#c0392b;;inherit>**4DN Google Drive folder:**</font> [[https://drive.google.com/drive/folders/1Rzn7_U_Id81LIHdu0ECcQ5Wc7sBLTqvW?usp=sharing|https://drive.google.com/drive/folders/1Rzn7_U_Id81LIHdu0ECcQ5Wc7sBLTqvW?usp=sharing]]

**<font inherit/inherit;;#c0392b;;inherit>4DN Calendar:</font> **  [[https://wiki.4dnucleome.org/4dn:calendar_4dn|https://wiki.4dnucleome.org/4dn:calendar_4dn]]

<font inherit/inherit;;#c0392b;;inherit>**Agenda/Minutes:**</font> [[https://docs.google.com/document/d/1AadO9SjxAEjflAfYq5tdQ1u0OkJtAa_xBhQOk97f8Rk/edit?usp=sharing|https://docs.google.com/document/d/1AadO9SjxAEjflAfYq5tdQ1u0OkJtAa_xBhQOk97f8Rk/edit?usp=sharing]]

<font inherit/inherit;;#c0392b;;inherit>**Meeting attendee spreadsheet:**</font> [[https://docs.google.com/spreadsheets/d/1Q5PRijFtDwXanWL3caU8LHF1iouKhNR0w7HjWw-9PKg/edit?usp=sharing|https://docs.google.com/spreadsheets/d/1Q5PRijFtDwXanWL3caU8LHF1iouKhNR0w7HjWw-9PKg/edit?usp=sharing]]

<font inherit/inherit;;#c0392b;;inherit>**Email list: **</font>[[image@4dnucleome.org|]]

<font inherit/inherit;;#c0392b;;inherit>**Slack channel: **</font>swg-imaging-omics-exchange-data-formats

===== Mission Statement =====

This sub-group of the Imaging Working Group will develop recommended data formats and metadata specifications for sharing 3D chromatin folding traces obtained from multiplexed DNA FISH and other in-situ imaging-based omics approaches, with the flexibility to include additional multi-omic imaging data to be mapped to these structural data, such as RNA expression, protein distribution, cell morphology, or tissue coordinates.

===== Output =====

==== FISH Omics Format for Chromating Tracing (FOF-CT) ====

The first output of this sub-group is the proposed FISH Omics Format for Chromating Tracing (FOF-CT). We encourage the community to provide feedback ahead to approval from the November Steering Committee meeting. The format is available for comments in two versions:

  * [[https://docs.google.com/document/d/1z7rIYsQnbeS7y_SMuwoa8qsWKBD_BpV88vR79WiH_XI/edit?usp=sharing|General description]]

  * [[https://docs.google.com/spreadsheets/d/1GvqokS5w8Yw2tAngsqDC8YcLdRha5cGr/edit?usp=sharing&ouid=101141664079197066125&rtpof=true&sd=true|Specifications]]