Steering Committee
Introduction
The 4DN Steering Committee (4DN-SC) is an open group involving all the PI/PD's of the projects funded as part of the 4DN Program. The Steering Committee will meet monthly to discuss items of interest to the Consortium, including policies, future meetings and the opportunity fund initiatives. These will be open meetings and details will be circulated in advance by the Organizational Hub.
For formal decision making, 9 representatives from the PI/PD's and 1 member of staff from the NIH will be selected to represent all of the components of the program. The 4DN-OH PD/PI and 4DN-DCIC PD/PI will be permanent members of the 4DN-SC. All other members of the 4DN-SC will be selected by their peers to serve 2-year term on the 4DN-SC. Renewal or continuation of 4DN-SC membership will be decided during the in-person meeting of the 4DN-SC at the 2nd and 4th annual 4DN Network Investigator Meeting. Other NIH program staff, 4DN-OH staff, 4DN-DCIC staff or external experts may attend the 4DN-SC meetings on a regular or ad-hoc basis, but will be ex officio (non-voting) members. Below is the initial list of representatives chosen by NIH staff to serve on the SC during the first year of the program.
Mission
Meetings
1. 4DN Steering committee meetings will take place on the third Tuesday of each month at 8:00-9:30 am PDT, 11:00-12:30 pm EST. An agenda for each call will be sent out prior to the meeting.
2. All voting members should plan to be present at every SC meeting; if they are not able to attend, they should let NIH staff know (Lisa Chadwick) and identify someone from their group who will take their place.
3. NIH requests that groups ensure that a minimum of one senior investigator per grant is on each SC call. However, all 4DN network PIs/co-PIs/senior investigators are invited to participate in the 4DN SC meeting, and may do so as desired.
Summary of SC Member's Talk Link
We would like to collect the summary of every SC member's talk in 4DN SC meeting in order to help us have a much more streamlined SC meeting by having a more organized agenda and draft accurate meeting minutes.
This form is optional, however, we would greatly appreciate your participation in completing the form. We would appreciate it if this form can be filled out prior to the SC Meeting, however, it is also greatly appreciated if it is completed after the meeting.
2020 SC meeting chairs:
Feb 18: Andrew Belmont
April 21: Job Dekker
June 16: Clodagh O'Shea
August 18 - Andrew Belmont
2019 SC meeting chairs:
Jan 15: Andy
Feb 19: Andy
Mar 19: Job
Apr 16: Clodagh
May 21: Job
Jun 18: Andy
Jul 16: Clodagh
Aug 20: Job (Cancelled)
Sep 17: Clodagh
Oct 15: Job
Nov 19: Andy
Dec 17: Clodagh
Next Meeting
The next SC meeting is tentatively scheduled for August 18th, 2020
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Past meetings
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OH update:
New contact for including your bioRxiv paper to the 4DN bioRxiv channel. The 4DN bioRxiv channel was created by the Policy WG co-chairs Leonid Mirny and Nils Gehlenborg and maintained by Hugo Brandao in the Mirny lab. With Hugo leaving the Mirny lab, Leonid has contacted the OH and transferred the task for maintaining the 4DN bioRxiv channel to OH. Please contact OH (
oh@4dnucleome.org) or Riccardo Calandrelli (
rcalandrelli@eng.ucsd.edu) to add your bioRxiv paper to the 4DN bioRxiv channel.
OH has created a new and improved
4DN Newsletter! The newsletter was sent out on April 30th and can also be accessed through the 4DN portal.
There have been five new preprints added to the 4DN preprint repository in the web portal from Mario Nicodemi’s lab, Peter Park’s lab, Ting Wang’s lab, Bas van Steensel’s lab and Arun Raj’s lab. They are also featured in the web portal homepage and 4DN twitter. To date, we have a total of 266 preprints.
There has been one new publications added to the 4DN funded publication repository in the web portal from Jian Ma’s lab. They are also featured in the web portal homepage and 4DN twitter. To date, there have been 192 publications.
Current Twitter Statistics:
Current 4DN Portal Statistics (average over the period Jan-Jun 2020):
30 users per day
60 page views per day
The final 4DN Scientific Webinar series for Phase 1 is scheduled on June 26, 2020. The scheduled speakers are Karla Neugebauer and Charles Danko. The 4DN Scientific webinar announcement will be sent out on Thursday, June 18th which will include the speakers’ presentation titles and short bio.
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OH update:
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In response to the 4DN external consultants’s suggestions, the Outreach WG has recommended that 4DN investigators include a clickable 4DN logo with a scannable code into their website or presentation slides. To simply everyone’s work, please feel free to use the following materials:
To include the image or the scannable code into your website (an
example website), you can copy paste the following
HTML text into your website:
To include a scannable code into your slides or poster, please use
this image.
To include a logo into slides, please copy paste
this image or any other image you can find on 4DN web portal.
Please feel free to check out the Education & Outreach wiki page (click the “Internal wiki” button at
4dnucleome.org) for other templates of the 4DN logo and scannable codes.
The 4DN network’s educational materials contributed to fighting the current pandemic by sustaining universities’ seminar series and allowing for learning at home. Recorded 4DN webinars posted on
4DN YouTube channel have been used as seminars at several universities and colleges including UCSD and Red Rocks Community College.
2592 followers
7,000 - 15,000 impressions per month
387 overall
100 page views per day
50 users per day
Recent publications: 3
Recent new pre-prints added to bioRxiv: 6
November 19, 2019: CANCELLED * Meeting chair: Andrew Belmont
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Action Items:
Register and submit your abstracts by October 15th.
SC meeting will be scheduled every other month. OH will send an email a week before the meeting and SC can decide to cancel if there are no pressing issues.
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Everyone to contact DCIC in a timely manner when you have your data ready. Please check your lab’s data submissions now.
Register for the annual meeting. Deadline is October 15th. Also log in to the 4DN Web Portal and check out the 4DN-ASCB Satellite meeting page for more information.
Please check out the new 4DN Directory.
Planning Committee is on Friday, September 20th. All are welcome to join.
OH update:
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ANNUAL PLANNING COMMITTEE MEETING 2019
Friday, September 20, 2019 | 11:30 am Pacific Daylight Time (GMT-07:00) | 30 minutes
Recurrence: The 3rd Friday of every month, from Friday, April 19, 2019,
Meeting number: 808 072 045
Meeting password: Q37ryPYp
Meeting link: https://4dnucleome.webex.com/4dnucleome/j.php?MTID=m9782a3e5d160ce0803b7c8d2d8a30b81
Audio connection: 1-415-655-0002 US Toll
Access code: 808 072 045
Announcing people.4dnucleome (the 4DN Directory)
August 20, 2019: Link - CANCELLED * Meeting chair: Job Dekker
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March 19th, 2019: CANCELLED*
Meeting chair: Job Dekker
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Action Items:
Annual meeting planning committee would like to ask anyone who would like to participate to email oh@4dnucleome.org. There is also a draft agenda (google document) of the goals for 2019 Annual meeting that is linked to the Wiki page under 2019 Planning Committee. We would like to hear your input (no matter if you are involved in the planning committee or not).
All are encouraged to get into the new Wiki.
Reminder to contact Peter Park at DCIC if you’d like our data coordinating center to host data from other consortiums that you’re wondering where you should put. Also, submit your data early before submitting your preprint.
OH update:
February 19th, 2019: Link
Meeting chair: Andrew Belmont
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Action Items:
Energizing 4DN outreach activities. NIH reached out to OH for enhanced coordination of outreach activities. Sheng Zhong (OH PI) and Zhen Chen (OH Adjunct PI) have agreed to contribute to the coordination of the renewed 4DN outreach working group together with Peter Fraser and Ting Wang.
Email OH at
oh@4dnucleome.org if interested in becoming a member of the 2019 Annual Planning Committee and Outreach WG.
DCIC will implement a badge of any publications that had previous 4DN
pre-print release in the Data Portal. Sheng will provide the data.
JAWG and revamped Outreach WG should schedule one phone call together.
OH update:
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November 20th, 2018: Link
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August 21, 2018: Link - CANCELLED* Meeting chair: Andrew Belmont
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Action Items:
Deadline for RFI for 4DN responses was August 6th.
DCIC will write a brief simple language about how 4DN data should be cited based on the data sharing policy and will be made available on the data portal.
Barchart in the Data Portal with option to group by center has been completed (July 27).
Associate members Maxwell Libbrecht/Michael Hoffman and Kai Tan are added to the JA WG mailing group on July 27th, 2018.
Sheng and OH are requesting comments on the 3D Genome textbook that is available on the Wiki.
OH update:
OMICS update:
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Action Items:
See the annual meeting report and survey results on the wiki, just reminder the date for the next annual meeting will be Dec 5 and 6 followed by a public meeting satellite to the ASCB meeting on Dec 7, 2018.
Reminder that in general, all 4DN relevant data are welcomed on the DCIC data portal if data generation were supported by 4DN, or according to the progress that they should be submitted. And if you have any question, you could contact DCIC or any program directors.
The DCIC would like to implant standard for sc-Hi-C and single-particle tracking.
Regard data freeze plan for late fall 2017 as it described by DCIC.
The imaging group meeting in Nov with Euro-bioImaging will address how datasets are archived in that group.
Note that on the wiki of imaging group, there are order numbers for the beads of microscope calibration.
It is suggested that people start to submit data two months ahead of the data freeze deadline.
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Dates for 2018 annual meeting is set for December 5-7, 2018. December 5-6 are set for 4DN network meeting, and December 7 is dedicated to a ASCB/4DN doorstep meeting and is open to public.
2017 Annual meeting. Today is the deadline for registration to 4DN annual meeting, and the last day for enjoying the group rate for booking the conference hotel. The annual meeting will be held Sept 17-20 at Bethesda North Marriott Hotel & Conference Center. Registration status as of August 12, 2017, Registration - 227, Abstracts submitted - 69, Hotel - 138 rooms total booked, 168 hotel guests (double occupancy), workshop attendance - 61 . We have provided a summary of the
registration status as of August 12 under 4DN wiki → 2017 Annual Meeting.
Integrated approaches workshop. Immediately after the annual meeting, there will be an after party workshop titled ”
Integrated Approaches for Spatial and Temporal Mapping of Gene Activity in Cells and Tissues“. This workshop will be held on On Sept 20 at Neuroscience Center, 6001 Executive Blvd, on NIH campus. It is half mile walking distance from Bethesda North Marriott Hotel & Conference Center. Agenda for this workshop can be found in 4DN wiki under the “Meetings → Integrated approaches workshop”. A total of 83 people indicated that they will go to this workshop.
Preparations for TCPA awards. A brief update on TCPA awards. We would like to thank TCPA awardees Brad Cairns, Antonio Giraldez and Francois Spitz who have animal components in their proposed projects to work closely with us to establish an NIH-required oversight mechanism between UCSD and the awardees home institutions.
Outreach.
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Ting Wang, Jian Ma, Feng Yue and Sheng Zhong gave an introduction to the 4DN networks mission, scope, and undertakings in the 13th International Bioinformatics Workshop.
Action Items:
Put the topic of addressing key questions in cell line relevant biology in the working group meeting.
Today is the deadline for the annual meeting registration. Abstract should be uploaded today. If you registered for the imaging workshop, you would get the email. Or you should go on to register for that.
Send comments on the guidelines for uploading DNA FISH data.
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Meeting Chair: Job Dekker
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OH updates:
OH seeks approval of having 2018 annual meeting held in conjunction with ASCB meeting. The current plan for the 2018 4DN annual meeting is a 3-day meeting, from December 5th to 7th. The first two days will be a restricted to 4DN members, and the 3rd day will be a symposium open to public. Regarding the open-to-public symposium on the 3rd day, Thoru Pederson, Olivier and Judy discussed with American Society for Cell Biology (ASCB). ASCB organizers have enthusiasm to collaborate with 4DN consortium to make the 4DN symposium as a doorstep meeting of ASCB. The ASCB meeting will be held in San Diego from December 8 to 12. The ASCB doorstep meetings will be on December 7. We would like to ask if there are objections on having the 2018 annual meeting on December 5 - 7. If no objections, we will proceed with ASCB organizers to further coordinate the logistics.
A proposed workshop on Experimental Biology (EB) meeting. The 2018 EB meeting will be held from April 21 to 25 in San Diego. American Society for Biochemistry and Molecular Biology (ASBMB), a participating society of EB approached the organizational hub for proposing a nucleome workshop on 2018 EB meeting. We are in the process of coordinating with EB regarding a proposed workshop called “Genome and Nucleome”.
Policy.
Cell Lines
OMICS WG call for SC for approval of:
Imaging WG for discussion
Action Items:
Comment for after party meeting (the afternoon following the annual meeting).
Comment on the wiki for the 2018 annual meeting, and the conjunction with ASCB meeting.
Comment to Lisa for joining IHEK.
Comment on data release policy.
The policy working group meeting will be Aug 14 (just ahead of next SC), so comment and attend there would be appreciated.
Please attend the next Omics call for data normalization standards on July 24, 11 a.m.
Feedback to the imaging “Lock-in” documents. This will also be added to the next NOFIC SC meeting on Aug 1st.
“4DN policy on genome assembly” is approved in this SC meeting.
OH will send remind about the deadline of the annual meeting, and the imaging workshop in the annual meeting.
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4DN Steering Committee Meeting
The 3rd Tuesday of every month, from Tuesday, March 15, 2016, to no end date
8:00 am | Pacific Daylight Time (San Francisco, GMT-07:00) | 1 hr 30 mins
Join WebEx meeting
Meeting number: 808 364 213
Meeting password: KJCvJtWz
Join by phone
1-415-655-0002 US Toll
Access code: 808 364 213
Add this meeting to your calendar. (Cannot add from mobile devices.)
Need help? Go to http://help.webex.com.
In case we experience technical difficulties during the Steering Committee Meetings:
1. A new WebEx meeting invitation will be sent out immediately to the Steering Committee email list. If the problems persist, OH will use ReadyTalk as a backup conference service for the Scientific Webinar Series
2. The information on how to join the Ready-Talk Conference Call will be sent out via email to the Steering Committee list, subject: NEW STEERING COMMITTEE MEETING INFORMATION
Meeting chairs (2018)
January 16, 2018. Clodagh O'Shea
February 20, 2018. Andy Belmont
March 20, 2018. Job Dekker
April 17, 2018. Clodagh O'Shea
May 15, 2018. Job Dekker
June 19, 2018. Andy Belmont
July 17, 2018 Job Dekker
August 21, 2018 Andy Belmont
September 18, 2018 Clodagh O'Shea
October 16, 2018 Job Dekker
November 20, 2018 Andy Belmont
Meeting chairs (2017)
January 2017: Andy Belmont
February 21, 2017: Job Dekker
March 21, 2017: Clodagh O'shea
April 18, 2017: Andy Belmont
May 16, 2017: Job Dekker
June 20, 2017: Andy Belmont
July 18, 2017: Andy Belmont
August 15, 2017: Clodah O'Shea
September (4DN Annual meeting).
October 17, 2017: Andy Belmont
November 21, Job Dekker
Meeting chairs (2015-2016)
December 2015: Job Dekker
January 2016 (face-to-face meeting at NCI for voting members only): Job Dekker
February 2016: Job Dekker
March 2016: Clodagh O'shea
April 2016: Job Dekker
May 2016: Clodagh O'shea
June 2016: Job Dekker
July 2016: Clodagh O'shea
August 2016: Job Dekker
September 2016: Clodagh O'shea
October 2016: Job Dekker
November 2016: Clodagh O'shea
December 2016: Job Dekker
Documents
Data
Data can be directly uploaded here or put onto some dedicated servers with links posted here
Members
4DN Steering Committee voting members spreadsheet
This is a list of all people invited to participate at the Steering Committee Meeting
4DN Steering Committee members spreadsheet
Program Staff
This can be a list of all other working members in the committee.
Calendar