https://wiki.4dnucleome.org/ 2026-04-18T22:52:58-0700 https://wiki.4dnucleome.org/ https://wiki.4dnucleome.org/_media/wiki:favicon.ico text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:4dn_cell_repository?rev=1745364087&do=diff 4DN Cell Repository This page describes the ordering process for the established cell lines of the 4DN Cell Repository. The established cell lines specifically refer to the cell lines that have been approved by the Cell Line WG, 4DN steering committee, NIH, and have been ordered by OH or created by 4DN appointed groups. text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:4dn_opportunity_funds?rev=1745364087&do=diff 4DN Opportunity Funds NIH is committed to diversity and inclusion. Read more. Test link to subpage TCPA Sept 2016 * Update: FY17 4DN Opportunity Pool Initiative: Transformative Collaborative Project Award (TCPA) (9/21/2016). July 2016 * Announcement: FY17 4DN Opportunity Pool Initiative: Transformative Collaborative Project Award (TCPA). This document is discussed on 4DN steering committee meeting on July 19, 2016. text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:2016_annual_meeting?rev=1745364087&do=diff 2016 Annual Meeting 4DN 2016 Annual Meeting concluded on Oct 17, 2016. Thank you for attending to the annual meeting. We hope this meeting facilitated better communication and potential collaboration among members of the 4DN Network. We wish that there will be further progresses for the whole Network and for external research communities as well. text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:2017_annual_meeting?rev=1745364087&do=diff 2017 4D Nucleome Annual Meeting Sept 17-20, 2017 2017 Annual Meeting Planning Committee Members: Burak Alver, Olivier Blondel, Rafael Casellas, Lisa Chadwick, Ibrahim Cisse, Charles Danko, Xavier Darzacq, Xinxian Deng, Mitchell Guttman, Irene Jacobo, Jian Ma, Jan Liphardt, Judy Mietz, Thoru Pederson, Shankar Subramaniam, Feng Yue, Sheng Zhong text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:2018_annual_meeting?rev=1745364087&do=diff 2018 Annual Meeting ANNUAL MEETING SURVEY RESULTS ANNUAL MEETING REPORT ASCB SATELLITE MEETING REPORT [sites.google.com_a_4dnucleome.org_4d-nucleome-wiki_meetings-and-committees_2018-annual-meeting_copy_of_5i5a5387-pano.jpg] 2018 4D Nucleome Annual Meeting December 5-6, 2018 8:00am - 7:00pm Marriott Marquis San Diego Marina San Diego, CA Meeting program Poster Abstract list [https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/meetings-and-committees/2017-4d-nucleome-annual… text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:2019_annual_meeting?rev=1745364087&do=diff 2019 Annual Meeting Annual Meeting Report [https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/meetings-and-committees/2017-4d-nucleome-annual-meeting/4dnucleome%20logo.png?attredirects=0] 2019 4D Nucleome Annual Meeting December 4, 2019 8:00am - 7:00pm Capital Hilton Hotel, Washington D.C. Program agenda Meeting program booklet Hotel floor map Poster Abstract list (TBD) (*The 2019 4DN Annual Meeting is a closed meeting for the 4D Nucleome consortium members only.) text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:associate_member_application?rev=1745364087&do=diff Associate Member Application Insert spreadsheet: <https://docs.google.com/spreadsheets/d/1aUsUkypUiSu2uWHTKI3Hf5JRoiiMbXRMbnHqVmz7RYI/edit> text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:associate_membership_letters_of_intent?rev=1745364087&do=diff Associate Membership Letters of Intent Insert spreadsheet https://docs.google.com/spreadsheets/u/1/d/1KVXixwoerLAWvgzgfQPplv57_OjTvZOqZ6CdNFGoxLc/edit * 4DN ASSOCIATE MEMBER APPLICATION FORM * 4DN ASSOCIATE MEMBER INFORMATION UPDATE FORM ---------- text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:calendars?rev=1745364087&do=diff Calendars of working groups and other events NOFIC Steering Committee Publication Policy OMICS Data Standards Imaging Data Standards Data Analysis Education and Outreach Cell Lines and Samples Joint 4D Nucleome Analysis text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:collaboration_plaza?rev=1745364087&do=diff Collaboration Plaza This is a page dedicated to 4DN members seeking collaboration opportunities among the network. * If your project would need some help in methods / technologies, you may post in “Help wanted” by stating your question and requirements so that other researchers may fill in. text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:community_information?rev=1745364087&do=diff Community Information On this page, you will find frequently asked questions. If you have a question that is not listed below, please send an email to <oh@4dnucleome.org>. * <oh@4dnucleome.org> Inquiries/questions to OH should be directed to this email account (e.g. request addition of new member, how to use WebEx, etc.). This email account is managed by Kate Rivera. You will receive an email response from text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:data_submission_and_release?rev=1745364087&do=diff Data submission and release This page records which lab will produce data from what technologies. Technology Survey and Survey Results Results of data generation survey (updated 3/21/2017). —- The following survey was closed —– We have created a survey for experimental technologies that may be used in 4DN Network. text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:email_groups?rev=1745364087&do=diff Email groups NIH LISTSERVS NIH have put together a number of listservs to facilitate communication across subgroups of the consortium. NOTE: You can send an email to a listserv However, if you are not currently a member of the listserv, you will receive an email asking for your confirmation of sending the message. To confirm, please do ONE of the following: text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:job_opportunities?rev=1745364087&do=diff Job Opportunities Please use the following button to add a new job opportunity entry. //forms.gle/vZqervrJYnYKTHVB7 Note: it may take a while (up to 15 minutes) for any newly created job opportunity entry to appear in the list below. text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:manuscript_tracking?rev=1745364087&do=diff Manuscript Tracking Preprints on bioRxiv The bioRxiv has created a channel for our preprints, which can be accessed here: https://connect.biorxiv.org/relate/content/66. The content of the channel is manually curated. If you notice that one of your preprints is missing or incorrectly assigned to the list, please contact OH at text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:meetings_and_committees?rev=1745364087&do=diff Meetings and Committees The organizational structure for 4DN committees and working groups is as follows. * Steering Committee * NOFIC Steering Committee * Working groups * Policy * Omics data standards * Imaging data standards text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:members_and_associates?rev=1745364087&do=diff Members and Associates Number of grants: A total of 29 grants are funded, including 6 in U54 mechanism and 23 in U01 mechanism. Number of PIs: There are 53 PIs and co-PIs, among whom 51 are distinct PIs. Number of institutes and sites: The grants are made to text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:nofic_steering_committee?rev=1745364087&do=diff NOFIC Steering Committee In order to address some questions I have been receiving about the role of the NOFIC SC and the process moving forward, herein I will summarize the role of the NOFIC SC, some processes and highlight some important points. text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:partner_consortiums_new?rev=1745364087&do=diff Partner Consortiums (new) International Human Epigenome Consortium (IHEC) https://www.surveymonkey.com/r/M5RZ9T3 <charles.dupras2@mcgill.ca> <yann.joly@mcgill.ca> September 2, 2020 - Bioethics * Agenda * * * 3. Survey on Challenges in Epigenetics (Charles) * * * * Minutes (August) * Ethics watch paper * EU-STANDS4PM hDAA * EGA-EBI link September 1, 2020 - Assay Standards and Ecosystems text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:protocols?rev=1745364087&do=diff Protocols This page serves as a repository of protocols used in 4DN projects. All teams are encouraged to post your protocols as sub-pages to this Wiki page. 1. Genomic technologies currently in use or being developed in the 4DN network (10/17/2016). * 3C-seq (Dekker lab) * 4C-seq (Harmen J.G. van Werken et al. 2012) * 5C (J. Dostie & J. Dekkerhttp://www.nature.com/nprot/journal/v2/n4/pdf/nprot.2007.116.pdf. 2007) * Hi-C (Dekker. lab, supp data) * ChIA-PET ( text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series?rev=1745364087&do=diff Scientific Webinar Series Mission The 4DN Consortium Scientific Webinar Series is designed to promote sharing ideas and establishment of new collaborations among the consortium members. It features scientific presentations by 4DN member group. These presentations are focused on new discoveries, and new approaches and are not meant to be high-level summaries of deliverables/objectives of each project as in annual consortium meetings. Each group is strongly encouraged to present unpublished rese… text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:start?rev=1745364087&do=diff Latest changes in 4DN Wiki text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:steering_committee?rev=1745364087&do=diff Steering Committee Introduction The 4DN Steering Committee (4DN-SC) is an open group involving all the PI/PD's of the projects funded as part of the 4DN Program. The Steering Committee will meet monthly to discuss items of interest to the Consortium, including policies, future meetings and the opportunity fund initiatives. These will be open meetings and details will be circulated in advance by the Organizational Hub. text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:webex_accounts?rev=1745364087&do=diff WebEx Accounts Overview The login portal for all WebEx accounts is 4dnucleome.webex.com, individual working group accounts are used for meetings within the group. 4DN OH Hosting: Steering Committee Meetings, Scientific Webinars, DCIC/OH Meetings, NIH/OH Meetings, Annual Meeting Planning Meetings, etc. text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:webex_basic_instructions?rev=1745364087&do=diff WebEx basic instructions <https://docs.google.com/a/eng.ucsd.edu/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDozNDhkY2FkNGNhMDA5MzRl> text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:working_group_template?rev=1745364087&do=diff Working Group Template Introduction This is the introduction for each working group, it could be a brief summary of what the group is doing. Mission / Objectives (These could be the targets for the working group) * A * B * C * D * E Meetings text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:working_groups?rev=1745364087&do=diff Working Groups WORKING GROUP CHAIRS: Keep your WG Wiki page updated by at minimum: * posting your Group meeting dates and Meeting Agenda under the Meetings section on your WG page. * Adding the Meeting Notes or Minutes to your WG Wiki page under Meetings section.