https://wiki.4dnucleome.org/ 2026-04-19T02:29:44-0700 https://wiki.4dnucleome.org/ https://wiki.4dnucleome.org/_media/wiki:favicon.ico text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive:april_26_2019?rev=1745364087&do=diff 4DN Scientific Webinar Series Edit April 26, 2019 8:00-8:20 am Pacific Time , then 10 minutes Q&A [soohyunlee1.jpg] Soohyun Lee Ph.D. Harvard Medical School <Soohyun_Lee@hms.harvard.edu> Title: “Reproducible Data Processing at the 4DN Data Coordination and Integration Center” Soo Lee is a senior bioinformatics scientist at the Department of Biomedical Informatics, Harvard Medical School. She has received her Ph.D. in bioinformatics in 2009 at Boston University, and has worked on numer… text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive:august_2_2019?rev=1745364087&do=diff Scientific Webinar Series slides presentations August 23, 2019 Presenter: Andrew Stephens (Umass Amherst) - “Heterochromatin and HP1alpha provide different nuclear mechanical contributions to maintain nuclear shape and function” (Link to presenter slides) Presenter: Yodai Takei text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive:february_28_2020?rev=1745364087&do=diff Scientific Webinar Series slides presentations February 28, 2020 Presenter: Brian Glenn St Hilaire (Baylor College of Medicine) - “ESCO1 and CTCF enable formation of long chromatin loops by protecting cohesinSTAG1 from WAPL” (Link to presenter slides) text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive:january_24_2020?rev=1745364087&do=diff Scientific Webinar Series slides presentations January 24, 2020 Presenter: Leo Barinov (Princeton University) - “Interplay between chromatin organization and transcriptional activity” (Link to presenter slides) Presenter: Mathias Hammer (Humboldt University of Berlin) - “A study on effects of fixation with Formaldehyde and Paraformaldehyde” ( text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive:july_26_2019?rev=1745364087&do=diff 4DN Scientific Webinar Series July 26, 2019 8:00-8:20 am Pacific Time , then 10 minutes Q&A [mary_arrastia2.jpg] Mary Arrastia PhD Student <marrasti@caltech.edu> Title: “Development of single-cell SPRITE to map higher order nuclear structures within single cells ” Mary Arrastia is a 4th year PhD student in Dr. Rustem Ismagilov’s lab at California Institute of Technology. She received her B.S. degree in Chemistry from California State University, Los Angeles. She is currently working in … text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive:june_28_2019?rev=1745364087&do=diff Scientific Webinar Series slides presentations June 28, 2019 Presenter: Asli Yildirim (University of California, Los Angeles) - “Studying the structural organization of subnuclear chromatin compartments through genome structure modeling” (Link to presenter slides) Presenter: Anastassiia Vertii text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive:march_27_2020?rev=1745364087&do=diff 4DN Scientific Webinar Series Edit April 24, 2020 8:00-8:20 am Pacific Time , 20 minutes talk, then 10 minutes Q&A [kahmad1.jpg] Kami Ahmad Principal Investigator <kahmad@fredhutch.org> Title: “CUT&RUN and CUT&Tag methods for profiling chromatin marks and chromatin structure.” text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive:may_21_2019?rev=1745364087&do=diff 4DN Scientific Webinar Series May 24, 2019 8:00-8:20 am Pacific Time , then 10 minutes Q&A [gasperini_molly.jpg] Molly Gasperini Ph.D. University of Washington gasperim@uw.edu Title: “Pairing enhancers with their target genes via multiplexed cellular genetic screens” text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive:may_2020?rev=1745364087&do=diff May 22, 2020 8:00-8:20 am Pacific Time , 20 minutes talk, then 10 minutes Q&A [minji_kim_jax_photo_1.jpg] Minji Kim Postdoc <Minji.Kim@jax.org> Title: “Chromatin folding dynamics in loop extrusion” Minji is a postdoc working with Drs. Yijun Ruan and Jeff Chuang at the Jackson Lab (JAX). She studies allele-specific chromatin interactions and chromatin dynamics, and develops computational tools along the way. Her BS, MS, and PhD degrees are from UC San Diego (UCSD) and University of Illino… text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive:october_25_2019?rev=1745364087&do=diff 4DN Scientific Webinar Series Edit October 25, 2019 8:00-8:20 am Pacific Time , 20 minutes talk, then 10 minutes Q&A Nimrod Rappoport PhD Student nimrodrap@gmail.com Title: “Single cell Hi-C and dissection of replication landscapes and chromosomal organization in mouse embryonic lineages” text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive:scientific-webinar-april-2017?rev=1745364087&do=diff 4DN Scientific Webinar Series April 28th, 2017 8:00-8:20 am Pacific Time, then 10-minute discussion and Q&A <https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/science-webinars-1/yongdaeshin_pic.jpg?attredirects=0> Yongdae Shin Postdoctoral Research Associate Princeton University <yongdaes@princeton.edu> Title: Optical control of intracellular phase transitions Yongdae Shin is a Postdoctoral Research Associate in Cliff Brangwynne's laboratory at Princeton University. He has deve… text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive:scientific-webinar-april-2018?rev=1745364087&do=diff 4DN Scientific Webinar Series April 27, 2018 8:00-8:20 am Pacific Time, then 10 minutes Q&A <https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/science-webinars-1/Neugebauer, Karla.jpg?attredirects=0> Karla Neugebauer Professor of Molecular Biophysics and Biochemistry Yale University <karla.neugebauer@yale.edu> Title: The Cell Nucleus under Stress Karla Neugebauer is a professor of Molecular Biophysics and Biochemistry at Yale University. Karla obtained her PhD in Neuroscience f… text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive:scientific-webinar-august-2017?rev=1745364087&do=diff 4DN Scientific Webinar Series August 25, 2017 8:00-8:20 am Pacific Time, then 10-minute discussion and Q&A <https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/science-webinars-1/KitLam.jpg?attredirects=0> Kit S. Lam Distinguished Professor and Chair Department of Biochemistry & Molecular Medicine Professor of Hematology & Oncology Harold Albin Johnson Endowed Chair in Biomedical Research text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive:scientific-webinar-august-2018?rev=1745364087&do=diff 4DN Scientific Webinar Series August 24, 2018 8:00-8:20 am Pacific Time, then 10 minutes Q&A <https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/science-webinars-1/RNEIJTS2 (1).jpg?attredirects=0> Roel Neijts Postdoc Institute Pasteur <francois.spitz@pasteur.fr> Title: “Exploring the TAD: specific enhancer-promoter interactions within regulatory domains” Roel Neijts is a post-doc in the lab of François Spitz at Institut Pasteur (Paris, France) since May 2017. He is interested in… text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive:scientific-webinar-february-2017?rev=1745364087&do=diff 4DN Scientific Webinar Series February 24th, 2017 8:00-8:20 am Pacific Time, then 10-minute discussion and Q&A [sites.google.com_a_4dnucleome.org_4d-nucleome-wiki_rsrc_1488529683354_science-webinars-1_vertii_1.jpg] Anastassia Vertii Postdoctoral Fellow University of Massachusetts Medical School <Anastassiia.Vertii@umassmed.edu> Title: High-resolution mapping of nucleolar-associated chromatin in mouse cells text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive:scientific-webinar-february-2018?rev=1745364087&do=diff 4DN Scientific Webinar Series February 23, 2018 8:00-8:30 am Pacific Time, then 20-minute discussion and 10 minute Q&A <https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/science-webinars-1/PAUL FIELDS (2).jpg?attredirects=0> Paul Fields Post-doctoral Fellow University of Washington <pfields@uw.edu> Title: Dynamics of Genome Reorganization during Human Cardiogenesis. text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive:scientific-webinar-february-2019?rev=1745364087&do=diff 4DN Scientific Webinar Series February 22, 2019 8:00-8:20 am Pacific Time, then 10 minutes Q&A <https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/science-webinars-1/Haoyue_Zhang (1).jpg?attredirects=0> Haoyue (Adam) Zhang Ph.D. Children's Hospital of Philadelphia <ZHANGH7@email.chop.edu> Title: “Re-configuration of Chromatin Structure During the Mitosis-G1 Phase Transition text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive:scientific-webinar-january-2018?rev=1745364087&do=diff 4DN Scientific Webinar Series January 26, 2018 8:00-8:15 am Pacific Time, then 10-minute discussion and 5 minute Q&A <https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/science-webinars-1/YK photo.JPG?attredirects=0> Yi Kou Research Associate/Post-doc Molecular and Computational Biology at USC yik109@gmail. com Title: Mapping genome 3D structure by direct DNA-DNA photo-crosslinking and click enrichment text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive:scientific-webinar-january-2019?rev=1745364087&do=diff 4DN Scientific Webinar Series January 25, 2019 8:00-8:20 amPacific Time, then 10 minutes Q&A [sites.google.com_a_4dnucleome.org_4d-nucleome-wiki_rsrc_1550545738917_science-webinars-1_jrinn1.jpg] John Rinn Ph.D. University of Minnesota <john_rinn@harvard.edu> Title:“Crispr Live Cell imaging (CLING) and HiC data: insights into CTCF, RNA and TAD Boundaries” John L. Rinn received his B.S. in Chemistry from the University of Minnesota and Ph.D. from Yale Molecular Biophysics and Biochemistry… text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive:scientific-webinar-july-2017?rev=1745364087&do=diff 4DN Scientific Webinar Series July 28, 2017 8:00-8:20 am Pacific Time, then 10-minute discussion and Q&A <https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/science-webinars-1/d4cf30be-5185-451a-b5b3-595e31b68ee7.png?attredirects=0> Rupesh Amin Senior Scientist Juno Therapeutics rupesh.h.amin@gmail.com Title: Engineering a Tethering System to Dissect Gene Regulation in Mouse Embryonic Stem Cells text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive:scientific-webinar-july-2018?rev=1745364087&do=diff 4DN Scientific Webinar Series July 27, 2018 8:00-8:20 am Pacific Time, then 10 minutes Q&A <https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/science-webinars-1/tpastinen.jpg?attredirects=0> Tom Pastinen PhD Center for Pediatric Genomic Medicine (CPGM) <tpastinen@cmh.edu> Title: “Interacting differentially methylated regions (iDMRs) to infer chromosome looping” text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive:scientific-webinar-june-2017?rev=1745364087&do=diff 4DN Scientific Webinar Series June 23, 2017 8:00-8:20 amPacific Time, then 10-minute discussion and Q&A <https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/science-webinars-1/Cory_Lindsay.jpg?attredirects=0> Cory Lindsay Staff Scientist The Scripps Research Institute <clindsay@scripps.edu> Title:Analysis of the nuclear lamina by proteomics and proximity labeling text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive:scientific-webinar-june-2018?rev=1745364087&do=diff 4DN Scientific Webinar Series June 22, 2018 8:00-8:20 am Pacific Time, then 10 minutes Q&A <https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/science-webinars-1/Neretti_picture.jpg?attredirects=0> Nicola Neretti PhD Brown University <nicola_neretti@brown.edu> Title: Inference and Validation of Chromosomes' 3D Structure Dr. Nicola Neretti is an Assistant Professor in the Department of Molecular Biology, Cell Biology, and Biochemistry, and in the Center for Computational Molecula… text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive:scientific-webinar-march-2017?rev=1745364087&do=diff 4DN Scientific Webinar Series March 24th, 2017 8:00-8:20 amPacific Time, then 10-minute discussion and Q&A <https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/science-webinars-1/Naoki.jpg?attredirects=0> Naoki Kubo Postdoctoral Fellow University of California, San Diego <nakubo@ucsd.edu> Title:Analysis of Chromatin Organization after Acute Loss of CTCF in Mouse Embryonic Stem Cells text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive:scientific-webinar-march-2018?rev=1745364087&do=diff 4DN Scientific Webinar Series March 23, 2018 8:00-8:30 am Pacific Time, then 20-minute discussion and 10 minute Q&A <https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/science-webinars-1/Rajarshi.png?attredirects=0> Rajarshi P Ghosh Post-doctoral Fellow Stanford University <rajarshi@stanford.edu> Title: Chromatin dynamics: Motional signatures of transcriptional state text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive:scientific-webinar-may-2017?rev=1745364087&do=diff May 26, 2017 8:00-8:20 am Pacific Time, then 10-minute discussion and Q&A <https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/science-webinars-1/vishnu.jpg?attredirects=0> Vishnu Dileep Graduate Student Florida State University <vdileep@bio.fsu.edu> Title: Measuring genome-wide replication timing in single cells Vishnu Dileep is a graduate student in Dr. David Gilbert's lab at Florida State University. His research focuses on the relationship between DNA replication-timing regul… text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive:scientific-webinar-may-2018?rev=1745364087&do=diff 4DN Scientific Webinar Series May 25, 2018 8:00-8:20 amPacific Time, then 10 minutes Q&A <https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/science-webinars-1/amin_allahyar1.jpg?attredirects=0> Amin Allahyar PhD Delft University of Technology <a.allahyar@hubrecht.eu> Title:Enhancer hubs and loop collisions identified from single-allele topologie Amin Allahyar performed his PhD (2018) at the Delft University of Technology (Dr. Jeroen de Ridder) where he explored different me… text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive:scientific-webinar-october-2017?rev=1745364087&do=diff 4DN Scientific Webinar Series October 27, 2017 8:00-8:20 am Pacific Time, then 10-minute discussion and Q&A <https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/science-webinars-1/ADAN HORTA.jpg?attredirects=0> Adan Horta MD/PhD candidate at Columbia University <horta.adan@gmail.com> Title: Interchromosomal Interactions as a Source of Neuronal Diversity Adan Horta is 5th year MD/PhD candidate at Columbia University with interests in neuroscience, genomics, and the mechanisms under… text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive:scientific-webinar-october-2018?rev=1745364087&do=diff 4DN Scientific Webinar Series October 26, 2018 8:00-8:20 am Pacific Time, then 10 minutes Q&A [sites.google.com_a_4dnucleome.org_4d-nucleome-wiki_rsrc_1550545738917_science-webinars-1_martin_falk.jpg] Martin Falk Graduate Student Massachusetts Institute of Technology <mafafalk@gmail.com> Title: Heterochromatin drives organization of conventional and inverted nuclei text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive:scientific-webinar-september-2018?rev=1745364087&do=diff 4DN Scientific Webinar Series September 28, 2018 8:00-8:20 am Pacific Time, then 10 minutes Q&A <https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/science-webinars-1/Adrien Senecal (1).png?attredirects=0> Adrien Senecal Postdoc Albert Einstein College of Medicine <adrien.senecal@einstein.yu.edu> Title: The p53 transcription factor regulates transcriptional burst frequency and multiple steps of formation and disruption of chromatin on the p21 gene locus text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:scientific_webinar_series:scientific_webinar_presentation_archive:september_2019?rev=1745364087&do=diff Scientific Webinar Series slides presentations September 27, 2019 Presenter: Joshua Riback (Princeton University) - “Composition dependent phase separation underlies directional flux through the nucleolus” (Link to presenter slides) Presenter: Jian Ma