https://wiki.4dnucleome.org/ 2026-04-19T02:20:18-0700 https://wiki.4dnucleome.org/ https://wiki.4dnucleome.org/_media/wiki:favicon.ico text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:working_groups:policy:april-2016-call?rev=1745364087&do=diff April 2016 Call text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:working_groups:policy:august-2016-call-notes?rev=1745364087&do=diff August 2016 Call Notes Attendees: Nils Gehlenborg, Stephanie Alexander, Chuck Murry (Notes: Matt Roy, HMS) Review and Discussion of comments on drafted policies 1)\Publication policy a.\Nils notes there were comments from two people b.\Chuck finds comments to be of minute details c.\ text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:working_groups:policy:august-2016-call?rev=1745364087&do=diff August 2016 Call Time: 8 August 2016, 10 AM Eastern Meeting number: 805 404 479\ Meeting password: G9JYhnVd\ Meeting link: <https://4dnucleome.webex.com/4dnucleome/j.php?MTID=m37b2dd267266d546a1d964b05dc5d3fa>\ \ Audio connection: +1-415-655-0002 US Toll\ Access code:\805 404 479 1. Review and discuss feedback on data sharing policy from Steering Committee call text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:working_groups:policy:december-2016-call?rev=1745364087&do=diff December 2016 Call Monday, December 12, 2016\at 10:00 am Eastern Daylight Time (GMT-04:00) Meeting number:\806 557 714 Meeting password: yPwWWeb4 Meeting link:\https://4dnucleome.webex.com/4dnucleome/j.php?MTID=m89082c8ac812cbe1dad3fe6b901530a2 \ Audio connection: +1-415-655-0002\__US Toll The Data Release Policy will be our only agenda item. In particular, we need to come up with a definition and guidelines for “technology development data” and when as well as to whom it should be release… text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:working_groups:policy:december-2016-notes?rev=1745364087&do=diff December 2016 Notes Participants:\Nils Gehlenborg, Leonid Mirny, Lisa Chadwick, Larry Gerace (Kathia Z - muted) Discussion: - Update on RFI comment submission and Nature News item - Manuscript Tracker - Add fields for project type, cell lines used, data types used - Rename title to text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:working_groups:policy:february-2016-call?rev=1745364087&do=diff February 2016 Call text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:working_groups:policy:february-2016-notes?rev=1745364087&do=diff February 2016 Notes 4DN Publications Committee Feb 08 2016 Meeting Notes Chair: Nils Gehlenborg Attendees: Huimin Zhao, Larry Garace, Leonid Mirny, Shankar Subramaniam, Timothee Lionet, Olivier Blondel, Chuck Murry (notes) Absent: Iddil Bekirov, Stephanie Alexander text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:working_groups:policy:february-2017-call?rev=1745364087&do=diff February 2017 Call February 2017 Call Monday, February 13, 2017 at\10:00 am Eastern Daylight Time (GMT-04:00) Meeting number:\806 557 714 Meeting password: yPwWWeb4 Meeting link:\https://4dnucleome.webex.com/4dnucleome/j.php?MTID=m89082c8ac812cbe1dad3fe6b901530a2 \ Audio connection: +1-415-655-0002\__US Toll Agenda 1. bioRxiv is no longer accepting pure methods papers (h/t Dave Gilbert) - what alternatives should we consider? text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:working_groups:policy:february-2017-notes?rev=1745364087&do=diff February 2017 Notes Notes drafted by Kathia Zaleta 02-13-2017 4DN POLICY MINUTES Next meeting March 13th, 2017 AGENDA: * Bioarchive submissions * Publication release policy (Talk to: Bill Noble, Andy) 1.- Bioarchive submissions * Recently Dr. Gilbert tried to post a manuscript in BioRxiv and got rejected. Changes in BioRxiv policy states that they do not longer accept protocol/methods type manuscripts. text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:working_groups:policy:january-2016-call?rev=1745364087&do=diff January 2016 Call Date and Time 8 January 2016 at 12:00 PM Eastern\(Poll: http://doodle.com/poll/ekm5btvaw7ce6wq3) ===== WebEx Information ===== * Meeting link:\https://4dnucleome.webex.com/4dnucleome/j.php?MTID=mc136f487b1dec086723a1f817316ef73 * Meeting number: 803 810 467 * Meeting password: wXuYZruA * Audio connection:\+1-415-655-0002 US Toll * Access code: 803 810 467 ===== Agenda ===== * Agree on the scope/mission of the WG. Confirm name of WG. * Fix date and time for … text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:working_groups:policy:january-2016-notes?rev=1745364087&do=diff January 2016 Notes text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:working_groups:policy:january-2017-call?rev=1745364087&do=diff January 2017 Call January 2017 Call Monday, January 23, 2017 at\10:00 am Eastern Daylight Time (GMT-04:00) Meeting number:\806 557 714 Meeting password: yPwWWeb4 Meeting link:\https://4dnucleome.webex.com/4dnucleome/j.php?MTID=m89082c8ac812cbe1dad3fe6b901530a2 \ Audio connection: +1-415-655-0002\US Toll Agenda * should we update the membership list? (and call for new members to join?) * old membership list would be archived * review feedback on manuscript tracker * feedback o… text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:working_groups:policy:january-2017-notes?rev=1745364087&do=diff January 2017 Notes Notes drafted by Kathia Zaleta 01-23-2017 4DN POLICY MINUTES - Kathia Zaleta Rivera Next meeting February 13th \2017 AGENDA: - Revise the membership of the policy working group - Feedback on the manuscript track - Release policy \ text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:working_groups:policy:july-2016-call?rev=1745364087&do=diff July 2016 Call Time: 11 July 2016, 10 AM Eastern Meeting number: 803 682 010 Meeting password: UP2JGKgr Meeting link:\https://4dnucleome.webex.com/4dnucleome/j.php?MTID=m00f5855d85c4ee36b4ab28fdcac963a9 Audio connection:\+1-415-655-0002 US Toll Access code: 803 682 010 1. Proposal to Rename Working Group * Nils proposes to rename the working group to text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:working_groups:policy:june-2016-call-notes?rev=1745364087&do=diff June 2016 Call Notes Attendees: Nils Gehlenborg, Lisa Chadwick, Olivier Blondel, Stephanie Alexander, Timothee Lionett, Iddil Bekirov (Notes: Matt Roy, HMS) \ Introductory conversation regarding having a structure to improve policy meeting input/feedback 1) Feedback on publication policy * Is intellectual property respectfully credited within the 4DN? * How can we assure the consortium is most productive to our mission while respecting rights in academia * How will policies be app… text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:working_groups:policy:june-2016-call?rev=1745364087&do=diff June 2016 Call Time: 13 June 2016, 10 AM Eastern Meeting number: 801 961 480 Meeting password: bWA79rv4 Meeting link: <https://4dnucleome.webex.com/4dnucleome/j.php?MTID=ma2cf52b58c5f157c566b1a7ff128ee94> Audio connection:\__+1-415-655-0002 US Toll Access code: 801 961 480 1. Feedback on Publication and Software Sharing Policy text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:working_groups:policy:march-2016-call?rev=1745364087&do=diff March 2016 Call text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:working_groups:policy:march-2016-notes?rev=1745364087&do=diff March 2016 Notes Particpants: Nils Gehlenborg (notes), Ewan Birney, Stephanie Alexander,\__Iddil Bekirov The participants reviewed key issues regarding software release as summarized here: <https://docs.google.com/document/d/1Ypq6WkGqyjIECruDK76XAs3jjeIkew5FatvINYRX4G4/edit?usp=sharing> text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:working_groups:policy:march-2017-call?rev=1745364087&do=diff March 2017 Call January 2017 Call \ |~~TABLE_CELL_WRAP_START~~ text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:working_groups:policy:march-2017-notes?rev=1745364087&do=diff March 2017 Notes Notes drafted by Kathia Zaleta 03-13-2017 4DN POLICY MINUTES Next meeting April 10th, 2017 AGENDA: 1. Comments on updated flow chart and draft policy (to be distributed ahead of the call) 2. Discussion of mechanisms to approve QC metrics and standards text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:working_groups:policy:may-2016-call?rev=1745364087&do=diff May 2016 Call Agenda: 1. Agree on meeting times beyond July 2016 2. Discussion of Data Release Policy: what do we need to discuss w/ Omics and Imaging Standards WGs in order to draft a data release policy? text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:working_groups:policy:november-2016-call?rev=1745364087&do=diff November 2016 Call Monday, November 14, 2016\at 10:00 am Eastern Daylight Time (GMT-04:00) Meeting number:\806 557 714 Meeting password: yPwWWeb4 Meeting link:\https://4dnucleome.webex.com/4dnucleome/j.php?MTID=m89082c8ac812cbe1dad3fe6b901530a2 \ Audio connection: +1-415-655-0002 US Toll Tentative Agenda * Data Release Policy:\ text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:working_groups:policy:november-2016-notes?rev=1745364087&do=diff November 2016 Notes text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:working_groups:policy:october-2016-call?rev=1745364087&do=diff October 2016 Call Monday, October 10, 2016\at 10:00 am Eastern Daylight Time (GMT-04:00) Meeting number:\804 046 736 Meeting password:\Ksr5NcBR Meeting link:\<https://4dnucleome.webex.com/4dnucleome/j.php?MTID=mf9239ece2fcee9300dbc415f7092a482> \ Audio connection: +1-415-655-0002 US Toll \ Tentative Agenda 0. Administrative: * text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:working_groups:policy:october-2016-notes?rev=1745364087&do=diff October 2016 Notes text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:working_groups:policy:september-2016-call?rev=1745364087&do=diff September 2016 Call Meeting number: 805 235 644 Meeting password: bamERJPj Meeting link:\https://4dnucleome.webex.com/4dnucleome/j.php?MTID=m6360c078adc8afce9e21851155bfb234 Audio connection:\+1-415-655-0002 US Toll Tentative Agenda Discuss input from NOFIC PIs 1. Suggested updates for the publication policy * We [encourage | recommend | require] each paper that\ text/html 2025-04-22T16:21:27-0700 Anonymous (anonymous@undisclosed.example.com) https://wiki.4dnucleome.org/4dn:phase1:working_groups:policy:september-2016-notes?rev=1745364087&do=diff September 2016 Call Notes 9/12/16 Attendees:\Shankar Subramaniam, Olivier Blondel, Lisa Chadwick, Kathia Zaleta, Chuck Murray, Nils Gehlenborg, Matt Roy (notes) 1.\Publication Policy * Many are worried about providing full manuscript with all details at the time of submission to full consortium, but people may be happy to post pre-print, such as BioRxiv, instead of sharing just with the consortium.