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| This form is optional, however, we would greatly appreciate your participation in completing the form. We would appreciate it if this form can be filled out prior to the SC Meeting, however, it is also greatly appreciated if it is completed after the meeting. | This form is optional, however, we would greatly appreciate your participation in completing the form. We would appreciate it if this form can be filled out prior to the SC Meeting, however, it is also greatly appreciated if it is completed after the meeting. | ||
| + | |||
| + | <font 20px/inherit;;inherit;;inherit>**2020 SC meeting chairs:**</font> | ||
| + | |||
| + | Feb 18: Andrew Belmont | ||
| + | |||
| + | April 21: Job Dekker | ||
| + | |||
| + | June 16: Clodagh O'Shea | ||
| + | |||
| + | August 18 - Andrew Belmont | ||
| <font 20px/inherit;;inherit;;inherit>**2019 SC meeting chairs:**</font> | <font 20px/inherit;;inherit;;inherit>**2019 SC meeting chairs:**</font> | ||
| - | Jan 15: Andy\\ Feb 19: Clodagh\\ Mar 19: Job,\\ Apr 16: Andy\\ May 21: Job\\ Jun 18: Andy\\ Jul 16: Clodagh\\ Aug 20: Job\\ Sep 17: Clodagh\\ Oct 15: Andy\\ Nov 19: Job\\ Dec 17: Clodagh | + | Jan 15: Andy\\ Feb 19: Andy\\ Mar 19: Job\\ Apr 16: Clodagh\\ May 21: Job\\ Jun 18: Andy\\ Jul 16: Clodagh\\ Aug 20: Job (Cancelled)\\ Sep 17: Clodagh\\ Oct 15: Job\\ Nov 19: Andy\\ Dec 17: Clodagh |
| ===== Next Meeting ===== | ===== Next Meeting ===== | ||
| - | <font 20px/inherit;;#e74c3c;;inherit>The next SC meeting will be on February 19, 2019.</font> | + | <font 20px/inherit;;#e74c3c;;inherit>The next SC meeting is tentatively scheduled for August 18th, 2020</font> |
| - | * February 19th, 2019: Link | + | * **August 18, 2020:** [[https://docs.google.com/document/d/1yU5D6b-T_SJslEJ0-FVBPmRwNJ7gT3ojj-rPm0erArM/edit?usp=sharing|Link]] |
| + | * Meeting chair: Andrew Belmont | ||
| + | * Meeting agenda: [[https://docs.google.com/document/d/1gbNwwBDqd-yfpslerGIZdkaj8DNDT8_8RVDCrkDAyto/edit|Link]] | ||
| + | * **Action Items:** | ||
| + | * OH will create a [[https://drive.google.com/open?id=1_DTwJotCdfNptH7MdgKA3Eis5IS99KYJEUtQZg3FdO0|google doc to solicit your ideas for continuity]] and a questionnaire will be created to achieve consensus around that. | ||
| + | * SC meeting date to be decided for August 18th (alternate date September 15th) | ||
| + | * To the WG charis, think about a letter or recommendations that you would like to pass on for your work to continue | ||
| + | |||
| + | . | ||
| + | |||
| + | ===== Past meetings ===== | ||
| + | |||
| + | * **June 16, 2020:** [[https://drive.google.com/open?id=1LDutuJDyODi8c6KeHDvkjKeTuB3_-S2QHrAAdBz4VhE|Link]] | ||
| * Meeting chair: Clodagh O'Shea | * Meeting chair: Clodagh O'Shea | ||
| - | * Meeting agenda: [[https://drive.google.com/open?id=1qvfcngihkUkgWWXiGBk2EkHkmkrX67em7RfZZHccJPU|Link]] | + | * Meeting agenda: [[https://docs.google.com/document/d/1_nHDKyENbS24TldGYysPXv7JGunrtrUZ0azW039bMD8/edit?usp=sharing|Link]] |
| + | * **Action Items:** | ||
| + | * Review JAWG 4DN Companion paper list and update abstract to the JAWG [[https://docs.google.com/spreadsheets/d/1HqXeIBTcOnb-dVgqgRzpQcdi9A9bf3jITx2K5vwvUTg/edit#gid=0|google sheet]] by the end of this week (April 25, 2020). | ||
| + | * **OH update:** | ||
| + | * New contact for including your bioRxiv paper to the 4DN bioRxiv channel. The 4DN bioRxiv channel was created by the Policy WG co-chairs Leonid Mirny and Nils Gehlenborg and maintained by Hugo Brandao in the Mirny lab. With Hugo leaving the Mirny lab, Leonid has contacted the OH and transferred the task for maintaining the 4DN bioRxiv channel to OH. Please contact OH ([[oh@4dnucleome.org|]]) or Riccardo Calandrelli ([[rcalandrelli@eng.ucsd.edu|]]) to add your bioRxiv paper to the 4DN bioRxiv channel. | ||
| + | * OH has created a new and improved [[https://publicate.it/p/bRsp.5145598|4DN Newsletter]]! The newsletter was sent out on April 30th and can also be accessed through the 4DN portal. | ||
| + | * There have been five new preprints added to the 4DN preprint repository in the web portal from Mario Nicodemi’s lab, Peter Park’s lab, Ting Wang’s lab, Bas van Steensel’s lab and Arun Raj’s lab. They are also featured in the web portal homepage and 4DN twitter. To date, we have a total of 266 preprints. | ||
| + | * There has been one new publications added to the 4DN funded publication repository in the web portal from Jian Ma’s lab. They are also featured in the web portal homepage and 4DN twitter. To date, there have been 192 publications. | ||
| + | * Current Twitter Statistics: | ||
| + | * 3,935 impressions per month | ||
| + | * 2,816 followers | ||
| + | * Current 4DN Portal Statistics (average over the period Jan-Jun 2020): | ||
| + | * 30 users per day | ||
| + | * 60 page views per day | ||
| + | * The final 4DN Scientific Webinar series for Phase 1 is scheduled on June 26, 2020. The scheduled speakers are Karla Neugebauer and Charles Danko. The 4DN Scientific webinar announcement will be sent out on Thursday, June 18th which will include the speakers’ presentation titles and short bio. | ||
| + | |||
| + | * **April 21, 2020:** [[https://docs.google.com/document/d/1c158C9FJot6IqOCQbmdjijIIrdasoQtpa0tAlQQagz4/edit?usp=sharing|Link]] | ||
| + | * Meeting chair: Job Dekker | ||
| + | * Meeting agenda: [[https://drive.google.com/open?id=1ACubssVNPrHag7PDiAr0uRaqPx2JZN51mkDc2l7wciE|Link]] | ||
| + | * **Action Items:** | ||
| + | * PIs and members are encouraged to login to people.4dnucleome.org/directory to review and edit information about you and your associates. | ||
| + | * Send comments or concerns about requirement for login for using 4DN files for downloads to Burak at DCIC. | ||
| + | * **OH update:** | ||
| + | * There have been five new preprints added to the [[https://www.4dnucleome.org/pre-prints.html|4DN preprint repository in the web portal]] from Jian Ma’s lab, Ana Pombo’s lab, Hening Lin’s lab, Job Dekker’s lab and Feng Yue’s lab. They are also featured in the web portal homepage and [[https://twitter.com/4DNucleome|4DN twitter]]. | ||
| + | * There have been two new publications added to the [[https://www.4dnucleome.org/pre-prints.html|4DN funded publication repository in the web portal]] from Xavier Darzacq’s lab and David Gilbert’s lab. They are also featured in the web portal homepage and [[https://twitter.com/4DNucleome|4DN twitter]]. | ||
| + | * In response to the 4DN external consultants’s suggestions, the Outreach WG has recommended that 4DN investigators include a clickable 4DN logo with a scannable code into their website or presentation slides. To simply everyone’s work, please feel free to use the following materials: | ||
| + | * To include the image or the scannable code into your website (an [[http://systemsbio.ucsd.edu/#portfolio|example website]]), you can copy paste the following HTML text into your website: | ||
| + | * To include a scannable code into your slides or poster, please use [[https://www.4dnucleome.org/Assets/images/4dn-qr.png|this image]]. | ||
| + | * To include a logo into slides, please copy paste [[https://www.4dnucleome.org/Assets/images/4dn-logo_1.png|this image]] or any other image you can find on 4DN web portal. | ||
| + | * Please feel free to check out the Education & Outreach wiki page (click the “Internal wiki” button at [[https://www.4dnucleome.org/|4dnucleome.org]]) for other templates of the 4DN logo and scannable codes. | ||
| + | * The 4DN network’s educational materials contributed to fighting the current pandemic by sustaining universities’ seminar series and allowing for learning at home. Recorded 4DN webinars posted on [[https://www.youtube.com/channel/UCe6r3u3rmaYAKSEuTLmfFxA|4DN YouTube channel]] have been used as seminars at several universities and colleges including UCSD and Red Rocks Community College. | ||
| + | |||
| + | * **February 18, 2020:** [[https://drive.google.com/open?id=1MsC3zk12UxVhKu2vbIrfRKTVYasIuRvEIi_KTj9JZRc|Link]] | ||
| + | * Meeting chair: Andrew Belmont | ||
| + | * Meeting agenda: [[https://docs.google.com/document/d/1trM0P1O5c92si5RhPLr5kSfM9s4ykIPXUyNc6FrNipo/edit?usp=sharing|Link]] | ||
| * Action Items: | * Action Items: | ||
| - | * Energizing 4DN outreach activities. NIH reached out to OH for enhanced coordination of outreach activities. Sheng Zhong (OH PI) and Zhen Chen (OH Adjunct PI) have agreed to contribute to the coordination of the renewed 4DN outreach working group together with Peter Fraser and Ting Wang. | + | * SC meeting will be scheduled every other month. OH will send an email a week before the meeting and SC can decide to cancel if there are no pressing issues. |
| - | * Email OH at [[oh@4dnucleome.org|]] if interested in becoming a member of the 2019 Annual Planning Committee and Outreach WG. | + | * **OH update:** |
| - | * DCIC will implement a badge of any publications that had previous 4DN | + | * **4DN Directory:** Members can directly update email addresses and profiles through the directory. |
| - | * pre-print release in the Data Portal. Sheng will provide the data. | + | * If you have any questions, please let us know at [[oh@4dnucleome.org|]] |
| - | * JAWG and revamped Outreach WG should schedule one phone call together. | + | * This email address will be used for delivery of all 4DN-related messages and shall be used to send all 4DN-related group emails. |
| - | * OH update: | + | * Click “UPDATE” to save. |
| - | * | + | * Update your email address (see this Google Slides for reference). |
| + | * Click “My profile” on the left. | ||
| + | * Login to people.4dnucleome ([[https://people.4dnucleome.org/|https://people.4dnucleome.org/]]). | ||
| + | * **Current Twitter Statistics: ** | ||
| - | ===== Past meetings ===== | + | - 2592 followers |
| + | - 7,000 - 15,000 impressions per month | ||
| + | - 387 overall | ||
| - | * January 15th, 2019: [[https://drive.google.com/open?id=1B8bx4qA93eHYRb30B5Q1zlG1heCY-ej3gY4UM6RXUX8|Link]] | + | * **Current 4DN Portal Statistics:** |
| + | |||
| + | - 100 page views per day | ||
| + | - 50 users per day | ||
| + | |||
| + | * **4DN Publications:** | ||
| + | |||
| + | - Recent publications: 3 | ||
| + | - Recent new pre-prints added to bioRxiv: 6 | ||
| + | |||
| + | * <font inherit/inherit;;#c0392b;;inherit>November 19, 2019: CANCELLED</font> * Meeting chair: Andrew Belmont | ||
| + | * Meeting agenda: [[https://drive.google.com/open?id=1sE3L-W671CqHeayrVOIqcHAMD2Mkg6mgfATIcDSrqLI|Link]] | ||
| + | * Action Items: | ||
| + | * Register and submit your abstracts by October 15th. | ||
| + | * SC meeting will be scheduled every other month. OH will send an email a week before the meeting and SC can decide to cancel if there are no pressing issues. | ||
| + | * October 15, 2019: [[https://docs.google.com/document/d/1YVZYvQt1czKq3CxTzDzaanu6OY3aIYtOvCakdGHroig/edit?usp=sharing|Link]] | ||
| + | * Meeting chair: Job Dekker | ||
| + | * Meeting agenda: [[https://drive.google.com/open?id=1_ozxLPrgsMtb_0x7BL1nAt32RvYMSeqSMFH3EnhEtPU|Link]] | ||
| + | * Action Items: | ||
| + | * Everyone to contact DCIC in a timely manner when you have your data ready. Please check your lab’s data submissions now. | ||
| + | * Register for the annual meeting. Deadline is October 15th. Also log in to the 4DN Web Portal and check out the 4DN-ASCB Satellite meeting page for more information. | ||
| + | * Please check out the new 4DN Directory. | ||
| + | * Planning Committee is on Friday, September 20th. All are welcome to join. | ||
| + | * **OH update:** | ||
| + | * **Annual meeting logistics: as of 10/15/19:** | ||
| + | * Registrants: 233 | ||
| + | * 4DN members: 158 | ||
| + | * General public: 42 | ||
| + | * Unknown: 33 | ||
| + | * Abstracts submitted: 72 | ||
| + | * Poster only: 26 | ||
| + | * Both: 46 | ||
| + | * Hotel reservations: 78 guests (217 nights out of room block 360) | ||
| + | * September 17, 2019: [[https://docs.google.com/document/d/1qSAgvB92pZ0avaKy0Tt_doFQao5950MDvSPYnf8w-3Y/edit?usp=sharing|Link]] | ||
| + | * Meeting chair: Clodagh O'Shea | ||
| + | * Meeting agenda: [[https://drive.google.com/open?id=1cEKUfvnHZ1KEbzBIsWubHm47sl4x9u3gWa7cdWduPqY|Link]] | ||
| + | * Action Items: | ||
| + | * Please login to Wiki to register for the annual meeting and reserve your hotel rooms. | ||
| + | * **OH update:** | ||
| + | * **Annual meeting logistics: as of 9/17/19:** | ||
| + | * Total number of registrants: 85 | ||
| + | * Total number of hotel reservations: 29 | ||
| + | * **Reminder: Planning Committee meeting: September 20th** | ||
| + | * All PIs are encouraged to attend the next planning committee meeting. All feedback is welcome. Draft agenda for the closed meeting will be a topic of discussion. For Webex login information, see below: | ||
| + | |||
| + | ANNUAL PLANNING COMMITTEE MEETING 2019 | ||
| + | |||
| + | Friday, September 20, 2019 | 11:30 am Pacific Daylight Time (GMT-07:00) | 30 minutes | ||
| + | |||
| + | Recurrence: The 3rd Friday of every month, from Friday, April 19, 2019, | ||
| + | |||
| + | Meeting number: 808 072 045 | ||
| + | |||
| + | Meeting password: Q37ryPYp | ||
| + | |||
| + | Meeting link: [[https://4dnucleome.webex.com/4dnucleome/j.php?MTID=m9782a3e5d160ce0803b7c8d2d8a30b81|https://4dnucleome.webex.com/4dnucleome/j.php?MTID=m9782a3e5d160ce0803b7c8d2d8a30b81]] | ||
| + | |||
| + | Audio connection: 1-415-655-0002 US Toll | ||
| + | |||
| + | Access code: 808 072 045 | ||
| + | |||
| + | * **Announcing people.4dnucleome (the 4DN Directory)** | ||
| + | * <font inherit/inherit;;#c0392b;;inherit>August 20, 2019: Link - CANCELLED</font> * Meeting chair: Job Dekker | ||
| + | * Meeting agenda: [[https://drive.google.com/open?id=1swgkriEGGN4rt65eHrdnpqgY_aD5PeBz7Yc-2ka5zHI|Link]] | ||
| + | * Action Items: | ||
| + | * Please login to Wiki to register for the annual meeting and reserve your hotel rooms. | ||
| + | * **OH update:** | ||
| + | * **Annual meeting logistics: as of 9/17/19:** | ||
| + | * Total number of registrants: 85 | ||
| + | * Total number of hotel reservations: 29 | ||
| + | * **4DN Online directory** | ||
| + | * July 16, 2019: [[https://docs.google.com/document/d/1LB1irsMjTyyaQo2TbgBeytUzSiihK3e2uOrFuGq1VqU/edit?usp=sharing|Link]] | ||
| + | * Meeting chair: Clodagh O'Shea | ||
| + | * Meeting agenda: [[https://drive.google.com/open?id=1LsOaFMpNe0s0N1WbHd8oD91OxKpuS5G4q_uFkn82pfg|Link]] | ||
| + | * Action Items: | ||
| + | * Look at the portal and Wiki and register for the meeting. | ||
| + | * **OH update:** | ||
| + | * **Annual meeting logistics: as of 7/15/19** | ||
| + | * Total number of registrants: 28 | ||
| + | * Total number of hotel reservations: 13 guests reserved | ||
| + | * **Outreach meeting** | ||
| + | * 4DN brochures are printed and ready to be sent out to PIs who request them. | ||
| + | * [[https://docs.google.com/spreadsheets/d/1K_xt2c0mwqSgELWvUIiwhx38tn90FonSdJhQ6I0p0vI/edit#gid=0|Spreadsheet]] with PI mailing address for sending brochures. | ||
| + | |||
| + | * June 18, 2019: [[https://docs.google.com/document/d/1ogpAUsZp5O2dWRkxxrNis7DHl2AAlQNt_xTg0qaYsig/edit?usp=sharing| Link]] | ||
| + | * Meeting chair: Andrew Belmont | ||
| + | * Meeting agenda: [[https://drive.google.com/open?id=1bUNAPmtTJQe1OujF2OICVwL3s3_v82Ihu7g94h0sOPk|Link]] | ||
| + | * Action Items: | ||
| + | * Give your input to OH about the annual meeting. | ||
| + | * Respond to requests from DCIC with the table they are developing for plans to submit data. | ||
| + | * OH update: | ||
| + | * Annual meeting logistics | ||
| + | * **Total number of registrants: 21 (all 4DN members)** | ||
| + | * **Total number of hotel reservations: 3 guests** | ||
| + | * [[https://www.4dnucleome.org/4dn-ascb-meeting-2019.html|4DN Portal link]] | ||
| + | * [[https://www.ascb.org/2019ascbembo/satelliteevents/|ASCB Satellite meeting link]] | ||
| + | |||
| + | * May 21, 2019: [[https://docs.google.com/document/d/1kMikbE3B3xNSVEV_5Pk1CwhBhInO6eJQVVfTUCk931I/edit?usp=sharing|Link]] | ||
| + | * Meeting chair: Job Dekker | ||
| + | * Meeting agenda: [[https://docs.google.com/document/d/1Kl1bU0vv2WGKNL0iEvVFBm4O98h5ptMBzVAeY5-c6jE/edit?usp=sharing|Link]] | ||
| + | * Action Items (from April SC meeting): | ||
| + | * Annual meeting planning committee would like to ask anyone who would like to participate to email [[oh@4dnucleome.org|]]. There is also a draft agenda ([[https://docs.google.com/document/d/1Uz8Wa8eflFDxUYfajebybApb3ZCYNStiFvpT6m5GRrM/edit|google document]]) of the goals for 2019 Annual meeting that is linked to the Wiki page under 2019 Planning Committee. We would like to hear your input whether you are involved in the planning committee or not. | ||
| + | * OH update: | ||
| + | * Annual Meeting Update: | ||
| + | * [[https://drive.google.com/open?id=196ZdOkyiAqmXx-xLQ7GdM6GRUFK7i5ngjGfqqUKOxZg|Planning Committee members list]] | ||
| + | * Registration opens: June 1, 2019 | ||
| + | * Registration deadline: October 15, 2019 | ||
| + | * [[https://drive.google.com/open?id=0B1Uh14Y8H75dVGVad1BUU2lrSlJHRzZwc0hoRlpmYzBvZTJv|Social media stats]] | ||
| + | * April 16th, 2019: [[https://docs.google.com/document/d/1i6_f25reAkDZ8A_0ZtLIzcqBQXN3O8zDbGSprGISZR4/edit?usp=sharing|Link]] | ||
| + | * Meeting chair: Clodagh O'Shea | ||
| + | * Meeting agenda: [[https://docs.google.com/document/d/1a5Dr6Hmg-EoeBUZLwRtJwi4gStWJZqBN5pwWaLIJJdA/edit?usp=sharing|Link]] | ||
| + | * Action Items (from February SC meeting): | ||
| + | * Annual meeting planning committee would like to ask anyone who would like to participate to email oh@4dnucleome.org. There is also a draft agenda (google document) of the goals for 2019 Annual meeting that is linked to the Wiki page under 2019 Planning Committee. We would like to hear your input (no matter if you are involved in the planning committee or not). | ||
| + | * All are encouraged to get into the new Wiki. | ||
| + | * Reminder to contact Peter Park at DCIC if you’d like our data coordinating center to host data from other consortiums that you’re wondering where you should put. Also, submit your data early before submitting your preprint. | ||
| + | * OH update: | ||
| + | * DCIC and OH have developed a plan to make all users registered to 4DN wiki and 4DN data portal consistent. | ||
| + | * **March 19th, 2019**: <font inherit/inherit;;#c0392b;;inherit>CANCELLED</font>* | ||
| + | * Meeting chair: Job Dekker | ||
| + | * Meeting agenda: [[https://docs.google.com/document/d/1zTDBtq34A5ZIaq5uaS6QblDWv7OJd9jnJsvlGwjL_MQ/edit?usp=sharing|Link]] | ||
| + | * Action Items: | ||
| + | * Annual meeting planning committee would like to ask anyone who would like to participate to email oh@4dnucleome.org. There is also a draft agenda (google document) of the goals for 2019 Annual meeting that is linked to the Wiki page under 2019 Planning Committee. We would like to hear your input (no matter if you are involved in the planning committee or not). | ||
| + | * All are encouraged to get into the new Wiki. | ||
| + | * Reminder to contact Peter Park at DCIC if you’d like our data coordinating center to host data from other consortiums that you’re wondering where you should put. Also, submit your data early before submitting your preprint. | ||
| + | * OH update: | ||
| + | * **February 19th, 2019:** [[https://docs.google.com/document/d/1bCcV1XItfq4zy4fu8oWZA4zJvqDLQ5aGyNng9G5nJa0/edit?usp=sharing|Link]] | ||
| + | * Meeting chair: Andrew Belmont | ||
| + | * Meeting agenda: [[https://drive.google.com/open?id=1qvfcngihkUkgWWXiGBk2EkHkmkrX67em7RfZZHccJPU|Link]] | ||
| + | * Action Items: | ||
| + | * Energizing 4DN outreach activities. NIH reached out to OH for enhanced coordination of outreach activities. Sheng Zhong (OH PI) and Zhen Chen (OH Adjunct PI) have agreed to contribute to the coordination of the renewed 4DN outreach working group together with Peter Fraser and Ting Wang. | ||
| + | * Email OH at [[oh@4dnucleome.org|]] if interested in becoming a member of the 2019 Annual Planning Committee and Outreach WG. | ||
| + | * DCIC will implement a badge of any publications that had previous 4DN | ||
| + | * pre-print release in the Data Portal. Sheng will provide the data. | ||
| + | * JAWG and revamped Outreach WG should schedule one phone call together. | ||
| + | * OH update: | ||
| + | * Outreach WG update (new members, meeting times) | ||
| + | * [[https://docs.google.com/spreadsheets/d/11rbqJYzMfZ3KRqRTLZBhG5BFd5KUbQY0J_DTFdluHW4/edit?usp=sharing|WG member list]] = total 41 members | ||
| + | * 7 new members | ||
| + | * 34 original members from Education & Outreach | ||
| + | * A doodle poll has been sent by Lucie Hebert to schedule the Outreach meeting time and poll will close on Monday, February 11th. It will be scheduled ona Thursday (1:00pm - 2:00pm ET) during the Joint Analysis meeting. | ||
| + | * Doodle poll [[https://doodle.com/poll/44eehei3kq8mxx4k|link]] | ||
| + | * NIH working group has made a [[https://www.youtube.com/watch?v=_M7xPHwJZdA&feature=youtu.be|YouTube video for introducing 4DN]] to lay audience. | ||
| + | * Update from the [[https://docs.google.com/document/d/1Nb6NTRm7naZWj8oP1DWDRbaFTupwDK7KNJjrK7brEfc/edit|annual meeting planning committee]]. | ||
| + | * Introduction of [[https://www.protocols.io/|protocols.io]] | ||
| + | * [[https://docs.google.com/presentation/d/1yCMsMYIY8SuRi3JV17nm3bCAoLNmWn5Ph_6AKoD82Mc/edit?usp=sharing|Update on 4DN Wiki (Xiaoyi)]] | ||
| + | * **January 15th, 2019:** [[https://drive.google.com/open?id=1B8bx4qA93eHYRb30B5Q1zlG1heCY-ej3gY4UM6RXUX8|Link]] | ||
| * Meeting chair: Andrew Belmont | * Meeting chair: Andrew Belmont | ||
| * Meeting agenda: [[https://docs.google.com/document/d/1_6ABbKcssE-C_eiGUFTIOuzrdmqtPJ6KcXeOCnCeibY/edit?usp=sharing|Link]] | * Meeting agenda: [[https://docs.google.com/document/d/1_6ABbKcssE-C_eiGUFTIOuzrdmqtPJ6KcXeOCnCeibY/edit?usp=sharing|Link]] | ||
| Line 57: | Line 263: | ||
| * [[https://docs.google.com/presentation/d/1h040xZ8DNS9qZ_8jEoZsudj97swzc-PJSOBJgYZnpK4/edit?usp=sharing|Upgrade of the 4DN wiki]] | * [[https://docs.google.com/presentation/d/1h040xZ8DNS9qZ_8jEoZsudj97swzc-PJSOBJgYZnpK4/edit?usp=sharing|Upgrade of the 4DN wiki]] | ||
| * [[https://docs.google.com/document/d/174APgE9ppCWaR0H9OLUjuX7Z0gwx9dL3dsCKzRnaMRQ/edit|Memo: intensifying outreach activities]]. | * [[https://docs.google.com/document/d/174APgE9ppCWaR0H9OLUjuX7Z0gwx9dL3dsCKzRnaMRQ/edit|Memo: intensifying outreach activities]]. | ||
| - | + | * **November 20th, 2018:** [[https://drive.google.com/open?id=1SIdZWIbIh1N0NqTVBg52XnU82V_x3Loyc4UvTKFMp4g|Link]] | |
| - | * November 20th, 2018: [[https://drive.google.com/open?id=1SIdZWIbIh1N0NqTVBg52XnU82V_x3Loyc4UvTKFMp4g|Link]] | + | |
| * Meeting chair: Andrew Belmont | * Meeting chair: Andrew Belmont | ||
| * Meeting agenda: [[https://docs.google.com/document/d/1afop4XZ9FRBAN_O7gIm1rk0LsdKWHmus3d9CJAqO1jE/edit#|Link]] | * Meeting agenda: [[https://docs.google.com/document/d/1afop4XZ9FRBAN_O7gIm1rk0LsdKWHmus3d9CJAqO1jE/edit#|Link]] | ||
| Line 68: | Line 273: | ||
| * Updates on a[[https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/meetings-and-committees/2018-annual-meeting/4dn-planning-committee|nnual meeting registration, abstract submission]], and [[https://docs.google.com/document/d/1gqA9lvCo6J5qO59WssDUk9oINev7nzSHio9sWrRDbD8/edit|talk selection]]. | * Updates on a[[https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/meetings-and-committees/2018-annual-meeting/4dn-planning-committee|nnual meeting registration, abstract submission]], and [[https://docs.google.com/document/d/1gqA9lvCo6J5qO59WssDUk9oINev7nzSHio9sWrRDbD8/edit|talk selection]]. | ||
| * Reports of [[https://docs.google.com/document/d/10YZAj4XFIkd4sv9OKwQDjz2ZF8JIMCE74REpRWFXCVw/edit|IHEC 4DN discussion session]], organized by Ananda Roy and Sheng Zhong, with panelists Erez Lieberman Aiden, Feng Yue, Ting Wang, John T. Lis, Eric Marcotte (IHEC), Martin Hirst (IHEC). | * Reports of [[https://docs.google.com/document/d/10YZAj4XFIkd4sv9OKwQDjz2ZF8JIMCE74REpRWFXCVw/edit|IHEC 4DN discussion session]], organized by Ananda Roy and Sheng Zhong, with panelists Erez Lieberman Aiden, Feng Yue, Ting Wang, John T. Lis, Eric Marcotte (IHEC), Martin Hirst (IHEC). | ||
| - | + | * **October 16, 2018:** [[https://docs.google.com/document/d/1YdX9N5JVUG-a6leq-vaN-r3QOMLofYRY7NffXaXHOY4/edit?usp=sharing|Link]] | |
| - | * October 16, 2018: [[https://docs.google.com/document/d/1YdX9N5JVUG-a6leq-vaN-r3QOMLofYRY7NffXaXHOY4/edit?usp=sharing|Link]] | + | |
| * Meeting chair: Job Dekker | * Meeting chair: Job Dekker | ||
| * Meeting agenda: [[https://drive.google.com/open?id=1IsuzYF2sUS88ENBCGVxvWd7Z1PaKKCc-cGYtAG4twdo|Link]] | * Meeting agenda: [[https://drive.google.com/open?id=1IsuzYF2sUS88ENBCGVxvWd7Z1PaKKCc-cGYtAG4twdo|Link]] | ||
| Line 81: | Line 285: | ||
| * [[https://docs.google.com/presentation/d/12Xh-n3mZTwik562z4r8n1GEWZfyHhRLx4LRuswU2-4o/edit#slide=id.p|Slides]] | * [[https://docs.google.com/presentation/d/12Xh-n3mZTwik562z4r8n1GEWZfyHhRLx4LRuswU2-4o/edit#slide=id.p|Slides]] | ||
| * Annual meeting: The annual meeting planning committee and the 4DN-ASCB satellite meeting committee has had a joint meeting. This joint meeting has set a procedure for jointly selecting short talks for the 4DN-ASCB satellite meeting and the 4DN annual meeting; a total of 9 short talks will be selected from abstracts. A quick reminder that abstract submission will close by Nov 1. Selected short talks will be notified on November 16. | * Annual meeting: The annual meeting planning committee and the 4DN-ASCB satellite meeting committee has had a joint meeting. This joint meeting has set a procedure for jointly selecting short talks for the 4DN-ASCB satellite meeting and the 4DN annual meeting; a total of 9 short talks will be selected from abstracts. A quick reminder that abstract submission will close by Nov 1. Selected short talks will be notified on November 16. | ||
| - | + | * **September 18, 2018: ** [[https://docs.google.com/document/d/1gw1C3h5ISdeJXWWHU-fENNS4gTgI5Hx4ew-tc5a2gTA/edit?usp=sharing|Link]] | |
| - | * September 18, 2018: [[https://docs.google.com/document/d/1gw1C3h5ISdeJXWWHU-fENNS4gTgI5Hx4ew-tc5a2gTA/edit?usp=sharing|Link]] | + | |
| * Meeting chair: Andrew Belmont | * Meeting chair: Andrew Belmont | ||
| * Meeting agenda: [[https://docs.google.com/document/d/1tYgAGps5HvUOIWeiKCf0EYubJpByafETZYzM2ikq7nQ/edit?usp=sharing|Link]] | * Meeting agenda: [[https://docs.google.com/document/d/1tYgAGps5HvUOIWeiKCf0EYubJpByafETZYzM2ikq7nQ/edit?usp=sharing|Link]] | ||
| Line 101: | Line 304: | ||
| * OMICS WG approved [[https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/protocols/damid|the DamID protocol]] on 07/23/2018 and seeks SC approval. | * OMICS WG approved [[https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/protocols/damid|the DamID protocol]] on 07/23/2018 and seeks SC approval. | ||
| * OMICS WG approved [[https://www.nature.com/articles/nprot.2018.015.epdf?author_access_token=vf_ylGdH8oTFIbGYdyahH9RgN0jAjWel9jnR3ZoTv0NOQV_YOinFX53TT-yN_6ziKCqbazelkV5TLOcj4FgNB72aCjfEhYgiGP0HE3gHZJbRtWNmNoZwyH7Y6HToKMfQ|the Cut&Run protocol]] on 07/23/2018 and seeks SC approval. | * OMICS WG approved [[https://www.nature.com/articles/nprot.2018.015.epdf?author_access_token=vf_ylGdH8oTFIbGYdyahH9RgN0jAjWel9jnR3ZoTv0NOQV_YOinFX53TT-yN_6ziKCqbazelkV5TLOcj4FgNB72aCjfEhYgiGP0HE3gHZJbRtWNmNoZwyH7Y6HToKMfQ|the Cut&Run protocol]] on 07/23/2018 and seeks SC approval. | ||
| - | |||
| * <font inherit/inherit;;#e74c3c;;inherit>August 21, 2018: Link - CANCELLED</font>* Meeting chair: Andrew Belmont | * <font inherit/inherit;;#e74c3c;;inherit>August 21, 2018: Link - CANCELLED</font>* Meeting chair: Andrew Belmont | ||
| * Meeting agenda: [[https://docs.google.com/document/d/166H_RzmEDXE6vRt3cZJbJNTKNFeyvwsRpRTK2l0ld4I/edit?usp=sharing|Link]] | * Meeting agenda: [[https://docs.google.com/document/d/166H_RzmEDXE6vRt3cZJbJNTKNFeyvwsRpRTK2l0ld4I/edit?usp=sharing|Link]] | ||
| Line 114: | Line 316: | ||
| * OMICS WG approved [[https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/protocols/damid|the DamID protocol]] on 07/23/2018 and seeks SC approval. | * OMICS WG approved [[https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/protocols/damid|the DamID protocol]] on 07/23/2018 and seeks SC approval. | ||
| * OMICS WG approved [[https://www.nature.com/articles/nprot.2018.015.epdf?author_access_token=vf_ylGdH8oTFIbGYdyahH9RgN0jAjWel9jnR3ZoTv0NOQV_YOinFX53TT-yN_6ziKCqbazelkV5TLOcj4FgNB72aCjfEhYgiGP0HE3gHZJbRtWNmNoZwyH7Y6HToKMfQ|the Cut&Run protocol]] on 07/23/2018 and seeks SC approval. | * OMICS WG approved [[https://www.nature.com/articles/nprot.2018.015.epdf?author_access_token=vf_ylGdH8oTFIbGYdyahH9RgN0jAjWel9jnR3ZoTv0NOQV_YOinFX53TT-yN_6ziKCqbazelkV5TLOcj4FgNB72aCjfEhYgiGP0HE3gHZJbRtWNmNoZwyH7Y6HToKMfQ|the Cut&Run protocol]] on 07/23/2018 and seeks SC approval. | ||
| - | + | * **July 17, 2018:** [[https://docs.google.com/document/d/1Xoi1oVcihLCHKuZSePOws8jRrIp_r9VgKDgZvkkJ3Ik/edit?usp=sharing|Link]] | |
| - | * July 17, 2018: [[https://docs.google.com/document/d/1Xoi1oVcihLCHKuZSePOws8jRrIp_r9VgKDgZvkkJ3Ik/edit?usp=sharing|Link]] | + | |
| * Meeting chair: Job Dekker | * Meeting chair: Job Dekker | ||
| * Meeting agenda: [[https://docs.google.com/document/d/1Ao9I4hf-WPsdLtwfC5pBFugnWPFc3YhaUmPqWzmSfX8/edit?usp=sharing|Link]] | * Meeting agenda: [[https://docs.google.com/document/d/1Ao9I4hf-WPsdLtwfC5pBFugnWPFc3YhaUmPqWzmSfX8/edit?usp=sharing|Link]] | ||
| Line 125: | Line 326: | ||
| * We drafted a text book titled [[https://zhonglab.gitbook.io/3dgenome/|3D Genome: from technology to visualization]], using an E-book format, with college students as the target audience. Please give comments and suggestions by emailing: [[nucleomebook@4dnucleome.org|]]. Content contributors are welcome! | * We drafted a text book titled [[https://zhonglab.gitbook.io/3dgenome/|3D Genome: from technology to visualization]], using an E-book format, with college students as the target audience. Please give comments and suggestions by emailing: [[nucleomebook@4dnucleome.org|]]. Content contributors are welcome! | ||
| - | * June 19, 2018: [[https://docs.google.com/document/d/1CDFIFGGuCeS4Q9LHPjNilOZbsfgftX1vw_b6CqIkXnc/edit?usp=sharing|Link]] | + | * **June 19, 2018:** [[https://docs.google.com/document/d/1CDFIFGGuCeS4Q9LHPjNilOZbsfgftX1vw_b6CqIkXnc/edit?usp=sharing|Link]] |
| * Meeting chair: Andrew Belmont | * Meeting chair: Andrew Belmont | ||
| * Meeting agenda: [[https://drive.google.com/open?id=1rdGLkkS40ynkhqNKpFzcYnlXv1VTCCbbj1gNIM5t8l0|Link]] | * Meeting agenda: [[https://drive.google.com/open?id=1rdGLkkS40ynkhqNKpFzcYnlXv1VTCCbbj1gNIM5t8l0|Link]] | ||
| Line 137: | Line 338: | ||
| * A total of 7 4DN webinar videos and another 8 educational videos produced by 4DN labs, NIH, and Science magazine have been released on YouTube 4DN channel. | * A total of 7 4DN webinar videos and another 8 educational videos produced by 4DN labs, NIH, and Science magazine have been released on YouTube 4DN channel. | ||
| - | * May 15, 2018: [[https://docs.google.com/document/d/1rqWCo7slzmbC8fr6W6AQYYrBbM55jMuC7erMDF70Dr8/edit?usp=sharing|Link]] | + | * **May 15, 2018:** [[https://docs.google.com/document/d/1rqWCo7slzmbC8fr6W6AQYYrBbM55jMuC7erMDF70Dr8/edit?usp=sharing|Link]] |
| * Meeting chair: Clodagh O'Shea | * Meeting chair: Clodagh O'Shea | ||
| * Meeting agenda: [[https://drive.google.com/open?id=1MNDuOyCrPpX3D8F0SRSLmH2-Fh50hqjMT-l1cDnq3k4|Link]] | * Meeting agenda: [[https://drive.google.com/open?id=1MNDuOyCrPpX3D8F0SRSLmH2-Fh50hqjMT-l1cDnq3k4|Link]] | ||
| Line 146: | Line 347: | ||
| * Send cases of engineered cell lines to Cells Discussion group in Cell Lines and Collaboration Plaza wiki pages. | * Send cases of engineered cell lines to Cells Discussion group in Cell Lines and Collaboration Plaza wiki pages. | ||
| * OH update: | * OH update: | ||
| - | * Annual meeting registration went live on May 1, 2018. There will be a total of 42 talks of which 10 are TCPAs. There will be sessions for both Joint Analysis, NOFIC+DCIC. A poster session will be scheduled on Day 1. Meeting program will be posted in wiki as soon as it is available. To date, 21 people have registered. | + | * Annual meeting registration went live on May 1, 2018. There will be a total of 42 talks of which 10 are TCPAs. There will be sessions for both Joint Analysis, NOFIC DCIC. A poster session will be scheduled on Day 1. Meeting program will be posted in wiki as soon as it is available. To date, 21 people have registered. |
| * 4DN-ASCB satellite meeting. | * 4DN-ASCB satellite meeting. | ||
| * ASCB will release [[https://ascb-embo2018.ascb.org/satellite/|a webpage for 4DN-ASCB satellite meeting]] on its conference website by May 15th. This webpage will include a hyperlink to the [[https://www.4dnucleome.org/4dn-ascb-satellite-meeting.html|full 4DN-ASCB conference website]]. The finalized [[https://drive.google.com/file/d/1PC_2wJqsfeTQ5lGdXdfxygiCj5QR80Hc/view|meeting program]] is available. | * ASCB will release [[https://ascb-embo2018.ascb.org/satellite/|a webpage for 4DN-ASCB satellite meeting]] on its conference website by May 15th. This webpage will include a hyperlink to the [[https://www.4dnucleome.org/4dn-ascb-satellite-meeting.html|full 4DN-ASCB conference website]]. The finalized [[https://drive.google.com/file/d/1PC_2wJqsfeTQ5lGdXdfxygiCj5QR80Hc/view|meeting program]] is available. | ||
| - | * April 17, 2018: [[https://drive.google.com/open?id=1VyKPU4L7xdsXPS6B_TgX6Lr0RP3oY3qzB0Y-utovO5Y|Link]] | + | * **April 17, 2018:** [[https://drive.google.com/open?id=1VyKPU4L7xdsXPS6B_TgX6Lr0RP3oY3qzB0Y-utovO5Y|Link]] |
| * Meeting chair: Clodagh O'Shea | * Meeting chair: Clodagh O'Shea | ||
| * Meeting agenda: [[https://docs.google.com/document/d/1JlBgqncUyLq9nHzP563CdpdrIqjAQFvI9J4UF4hxuOU/edit?usp=sharing|Link]] | * Meeting agenda: [[https://docs.google.com/document/d/1JlBgqncUyLq9nHzP563CdpdrIqjAQFvI9J4UF4hxuOU/edit?usp=sharing|Link]] | ||
| Line 167: | Line 368: | ||
| * Current proposal: 1.5 days of kick-off meeting style updates; half a day of working group etc sessions, 1 day of scientific conference open to public as a satellite meeting to ASCB meeting. | * Current proposal: 1.5 days of kick-off meeting style updates; half a day of working group etc sessions, 1 day of scientific conference open to public as a satellite meeting to ASCB meeting. | ||
| - | * March 20, 2018: [[https://docs.google.com/document/d/1bONKyPoDkRmDUxXu4-zpOs6uDDo-xA5qyCZibElISLs/edit?usp=sharing|Link ]] | + | * **March 20, 2018:** [[https://docs.google.com/document/d/1bONKyPoDkRmDUxXu4-zpOs6uDDo-xA5qyCZibElISLs/edit?usp=sharing|Link ]] |
| * Meeting chair: Job Dekker | * Meeting chair: Job Dekker | ||
| * Meeting agenda: [[https://docs.google.com/document/d/10DH-YJhS4d-mFEFKIvczXMBaeSghf16GvUK2eOLDpKs/edit?usp=sharing|Link]] | * Meeting agenda: [[https://docs.google.com/document/d/10DH-YJhS4d-mFEFKIvczXMBaeSghf16GvUK2eOLDpKs/edit?usp=sharing|Link]] | ||
| Line 177: | Line 378: | ||
| * The joint analysis working group call will be every week at Thursday 1 p.m.. You can join the call by contacting OH to add you into the contact list of the call, or contacting Feng. | * The joint analysis working group call will be every week at Thursday 1 p.m.. You can join the call by contacting OH to add you into the contact list of the call, or contacting Feng. | ||
| - | * February 20, 2018: [[https://docs.google.com/document/d/1PIb_YzCHfm-1ZqXMBACmWZL_d_xEWaca2lk08HLYti4/edit?usp=sharing|Link]] | + | * **February 20, 2018: ** [[https://docs.google.com/document/d/1PIb_YzCHfm-1ZqXMBACmWZL_d_xEWaca2lk08HLYti4/edit?usp=sharing|Link]] |
| * Meeting chair: Andrew Belmont | * Meeting chair: Andrew Belmont | ||
| * Meeting agenda: [[https://drive.google.com/open?id=1PERTayRpq32rG7jWndoTg_S-GvsXMItPxDn7cJ5Snhg|Link]] | * Meeting agenda: [[https://drive.google.com/open?id=1PERTayRpq32rG7jWndoTg_S-GvsXMItPxDn7cJ5Snhg|Link]] | ||
| Line 189: | Line 390: | ||
| * 1. Comment on DNase-HiC protocol ([[https://www.nature.com/articles/nprot.2016.126|https://www.nature.com/articles/nprot.2016.126]]). | * 1. Comment on DNase-HiC protocol ([[https://www.nature.com/articles/nprot.2016.126|https://www.nature.com/articles/nprot.2016.126]]). | ||
| * 2. Remember the upcoming annual meeting and the satellite meeting. The data release policy is now in place. You have until April 1 to submit any datasets associated with biorxiv publications. We are going to allow basic investigators as well coming to ASCB meeting to join in as long as we have a disclosure form in place. Remember the data freeze deadline. | * 2. Remember the upcoming annual meeting and the satellite meeting. The data release policy is now in place. You have until April 1 to submit any datasets associated with biorxiv publications. We are going to allow basic investigators as well coming to ASCB meeting to join in as long as we have a disclosure form in place. Remember the data freeze deadline. | ||
| - | * January 16, 2018: [[https://drive.google.com/open?id=1QXyHJjjuJSjaOTs0OLILC2XPslT7k4JkMQ_lVM3haU4|Link]] | + | * **January 16, 2018:** [[https://drive.google.com/open?id=1QXyHJjjuJSjaOTs0OLILC2XPslT7k4JkMQ_lVM3haU4|Link]] |
| * Meeting chair: Clodagh O'Shea | * Meeting chair: Clodagh O'Shea | ||
| * Meeting Agenda: [[https://drive.google.com/open?id=124jYG1y9x6mGdKl1kpr1c-m3YQ9N_OdjIrLAqwpMQ2U|Link]] | * Meeting Agenda: [[https://drive.google.com/open?id=124jYG1y9x6mGdKl1kpr1c-m3YQ9N_OdjIrLAqwpMQ2U|Link]] | ||
| Line 200: | Line 401: | ||
| * DNase-HiC protocol ([[https://www.nature.com/articles/nprot.2016.126|link here]]) was approved by OMICS Working Group on Jan. 8th, 2018. | * DNase-HiC protocol ([[https://www.nature.com/articles/nprot.2016.126|link here]]) was approved by OMICS Working Group on Jan. 8th, 2018. | ||
| - | * December 19, 2017: [[https://drive.google.com/open?id=1bTYy4F04czMFkpMQHubrktVlkPwm4QT-43A2eSGzCEc|Link]] | + | * **December 19, 2017: ** [[https://drive.google.com/open?id=1bTYy4F04czMFkpMQHubrktVlkPwm4QT-43A2eSGzCEc|Link]] |
| * Meeting chair: Job Dekker | * Meeting chair: Job Dekker | ||
| * Meeting Agenda: [[https://drive.google.com/file/d/1S3haDtMuqswd_tS_u-PNhO6SOylLLDup/view?usp=sharing|Link]] | * Meeting Agenda: [[https://drive.google.com/file/d/1S3haDtMuqswd_tS_u-PNhO6SOylLLDup/view?usp=sharing|Link]] | ||
| Line 213: | Line 414: | ||
| * Comment on the updated data release policy. | * Comment on the updated data release policy. | ||
| - | * November 21, 2017: [[https://docs.google.com/document/d/1QXyHJjjuJSjaOTs0OLILC2XPslT7k4JkMQ_lVM3haU4/edit?usp=sharing|Link]] | + | * **November 21, 2017: ** [[https://docs.google.com/document/d/1QXyHJjjuJSjaOTs0OLILC2XPslT7k4JkMQ_lVM3haU4/edit?usp=sharing|Link]] |
| * Meeting chair: Job Dekker | * Meeting chair: Job Dekker | ||
| * Meeting Agenda: [[https://docs.google.com/document/d/1iLXWGTYg8e8Kv3vJzzxw4qU_0lGr-Ni-k_Acw3-tMZg/edit?usp=sharing|Link]] | * Meeting Agenda: [[https://docs.google.com/document/d/1iLXWGTYg8e8Kv3vJzzxw4qU_0lGr-Ni-k_Acw3-tMZg/edit?usp=sharing|Link]] | ||
| Line 221: | Line 422: | ||
| * OH updates: | * OH updates: | ||
| * Creation of 4DN Youtube educational channel. Production and release of 4DN education video: [[https://www.youtube.com/channel/UCe6r3u3rmaYAKSEuTLmfFxA|4DN Imaging Workshop: toward standardization]] (lecturer: David Grunwald). | * Creation of 4DN Youtube educational channel. Production and release of 4DN education video: [[https://www.youtube.com/channel/UCe6r3u3rmaYAKSEuTLmfFxA|4DN Imaging Workshop: toward standardization]] (lecturer: David Grunwald). | ||
| - | * 4DN Outreach slides. OH prepared slides for any consortium members to change and use for 4DN outreach and in-reach activities.[[https://docs.google.com/a/eng.ucsd.edu/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDo3MzE2YmE5ZWI3OTUxNmM5| Outreach slides]], [[https://docs.google.com/a/eng.ucsd.edu/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDo3Mzg5NGIyM2UwYmIyZWY|in-reach ]]slides | + | * 4DN Outreach slides. OH prepared slides for any consortium members to change and use for 4DN outreach and in-reach activities.[[https://docs.google.com/a/eng.ucsd.edu/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDo3MzE2YmE5ZWI3OTUxNmM5|Outreach slides]], [[https://docs.google.com/a/eng.ucsd.edu/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDo3Mzg5NGIyM2UwYmIyZWY|in-reach ]]slides |
| * Release of [[https://www.4dnucleome.org/cell-lines.html|SOP on 4DN web portal]]. Click on each cell line to access the SOPs and other information. | * Release of [[https://www.4dnucleome.org/cell-lines.html|SOP on 4DN web portal]]. Click on each cell line to access the SOPs and other information. | ||
| * Action Items: | * Action Items: | ||
| Line 231: | Line 432: | ||
| * Note that on the wiki of imaging group, there are order numbers for the beads of microscope calibration. | * Note that on the wiki of imaging group, there are order numbers for the beads of microscope calibration. | ||
| * It is suggested that people start to submit data two months ahead of the data freeze deadline. | * It is suggested that people start to submit data two months ahead of the data freeze deadline. | ||
| - | * October 17, 2017: [[https://docs.google.com/a/eng.ucsd.edu/document/d/1DVAQ01p5uEA0ky-hCeyl7z9u56Hk-nL8mud0pikXiWQ/edit?usp=sharing|Link]] | + | * **October 17, 2017:** [[https://docs.google.com/a/eng.ucsd.edu/document/d/1DVAQ01p5uEA0ky-hCeyl7z9u56Hk-nL8mud0pikXiWQ/edit?usp=sharing|Link]] |
| * Meeting chair: Andrew Belmont | * Meeting chair: Andrew Belmont | ||
| * Meeting Agenda: [[https://drive.google.com/open?id=11E6u8QQq8DYRw0QlzAxcFLhyJ9A0I6TJ4g3pAAFn-jk|Link]] | * Meeting Agenda: [[https://drive.google.com/open?id=11E6u8QQq8DYRw0QlzAxcFLhyJ9A0I6TJ4g3pAAFn-jk|Link]] | ||
| Line 257: | Line 458: | ||
| * Send comments on the guidelines for uploading DNA FISH data. | * Send comments on the guidelines for uploading DNA FISH data. | ||
| - | * August 15, 2017: [[https://docs.google.com/document/d/1wVMHZnb2wwcSg7jPUTt9tPUwnoFPFOJ7rtNOsnqtgc0/edit?usp=sharing|Link]] | + | * **August 15, 2017: ** [[https://docs.google.com/document/d/1wVMHZnb2wwcSg7jPUTt9tPUwnoFPFOJ7rtNOsnqtgc0/edit?usp=sharing|Link]] |
| * Meeting chair: Clodagh O'Shea | * Meeting chair: Clodagh O'Shea | ||
| * Meeting Agenda: [[https://docs.google.com/document/d/1DTQQ3dHKdua9_B42mAFxn4Bfa5QohW1-V04Pk5nhPgQ/edit#|Link]] | * Meeting Agenda: [[https://docs.google.com/document/d/1DTQQ3dHKdua9_B42mAFxn4Bfa5QohW1-V04Pk5nhPgQ/edit#|Link]] | ||
| Line 275: | Line 476: | ||
| * Send comments on the guidelines for uploading DNA FISH data. | * Send comments on the guidelines for uploading DNA FISH data. | ||
| - | * July 18, 2017: [[https://drive.google.com/open?id=1LCVPvOrGtTfpGTNthaoWQLDUUo2T7HAWEy2ZcurGjEo|4DN SC Meeting Minutes 07-18-17]] | + | * **July 18, 2017: ** [[https://drive.google.com/open?id=1LCVPvOrGtTfpGTNthaoWQLDUUo2T7HAWEy2ZcurGjEo|4DN SC Meeting Minutes 07-18-17]] |
| * Meeting Chair: Job Dekker | * Meeting Chair: Job Dekker | ||
| * Meeting Agenda: [[https://docs.google.com/document/d/1a5V7aXGrAsfKgR8hJvVHLGBll11dKjh84Ju35Jrhlpo/edit?usp=sharing|Link]] | * Meeting Agenda: [[https://docs.google.com/document/d/1a5V7aXGrAsfKgR8hJvVHLGBll11dKjh84Ju35Jrhlpo/edit?usp=sharing|Link]] | ||
| Line 299: | Line 500: | ||
| * “4DN policy on genome assembly” is approved in this SC meeting. | * “4DN policy on genome assembly” is approved in this SC meeting. | ||
| * OH will send remind about the deadline of the annual meeting, and the imaging workshop in the annual meeting. | * OH will send remind about the deadline of the annual meeting, and the imaging workshop in the annual meeting. | ||
| - | * June 20, 2017: [[https://docs.google.com/document/d/1YfNzGp4Ve1QSHAy_y1yz4aHTpboyOzJIHTPKHTwfW3o/edit|4DN SC Meeting Minutes 06-20-17]] | + | * **June 20, 2017: ** [[https://docs.google.com/document/d/1YfNzGp4Ve1QSHAy_y1yz4aHTpboyOzJIHTPKHTwfW3o/edit|4DN SC Meeting Minutes 06-20-17]] |
| * Meeting Agenda: [[https://docs.google.com/document/d/1YfNzGp4Ve1QSHAy_y1yz4aHTpboyOzJIHTPKHTwfW3o/edit|Link ]] | * Meeting Agenda: [[https://docs.google.com/document/d/1YfNzGp4Ve1QSHAy_y1yz4aHTpboyOzJIHTPKHTwfW3o/edit|Link ]] | ||
| * OMICS WG call for SC for approval of: | * OMICS WG call for SC for approval of: | ||
| Line 310: | Line 511: | ||
| * Every one to look over the data release policy. | * Every one to look over the data release policy. | ||
| * Suggest paper for the convertion to the HG38. | * Suggest paper for the convertion to the HG38. | ||
| - | * May 16, 2017: [[https://docs.google.com/document/d/1sWSLahvDFuQKyU4h7Ukqs_xSN9eSqwzMaK5VBUwX9rI/edit#|4DN SC Meeting Minutes 05-16-17]] | + | * **May 16, 2017: ** [[https://docs.google.com/document/d/1sWSLahvDFuQKyU4h7Ukqs_xSN9eSqwzMaK5VBUwX9rI/edit#|4DN SC Meeting Minutes 05-16-17]] |
| * Meeting Agenda: [[https://drive.google.com/open?id=1lSEyWwTEQqDlUcvHx3LRAmPnl-b6nnn6LPlcx3ZsWuU|Link]] | * Meeting Agenda: [[https://drive.google.com/open?id=1lSEyWwTEQqDlUcvHx3LRAmPnl-b6nnn6LPlcx3ZsWuU|Link]] | ||
| * Documents for discussion: | * Documents for discussion: | ||
| Line 321: | Line 522: | ||
| * The imaging group sent out a microscope survey to ask everyone what imaging platforms are being used in labs including commercial platforms. | * The imaging group sent out a microscope survey to ask everyone what imaging platforms are being used in labs including commercial platforms. | ||
| - | * April 18, 2017 : [[https://docs.google.com/document/d/1r-6Gtsx9UeX0mtpwXUW6EeMgNTlgNo03vrHL398oveo/edit?usp=sharing|4DN SC Meeting Minutes 04-18-17]] | + | * **April 18, 2017 :** [[https://docs.google.com/document/d/1r-6Gtsx9UeX0mtpwXUW6EeMgNTlgNo03vrHL398oveo/edit?usp=sharing|4DN SC Meeting Minutes 04-18-17]] |
| * Meeting Agenda: [[https://drive.google.com/file/d/1B7ZskIlihVbPV3Yqv8NLx9PMCnC1PzOsCK1ek-7r7Y7RByCQuuJh-B1SQj5WPeOfdgY-xZOEpA-ROBEf/view|Link]] | * Meeting Agenda: [[https://drive.google.com/file/d/1B7ZskIlihVbPV3Yqv8NLx9PMCnC1PzOsCK1ek-7r7Y7RByCQuuJh-B1SQj5WPeOfdgY-xZOEpA-ROBEf/view|Link]] | ||
| * Documents for discussion: | * Documents for discussion: | ||
| Line 332: | Line 533: | ||
| * Remind everyone that the joint analysis and data analysis working group meeting will be on the first and third Thursday 1 p.m. Eastern Time. Contact Feng and Job if you would like to join the working group. It will be starting next month. | * Remind everyone that the joint analysis and data analysis working group meeting will be on the first and third Thursday 1 p.m. Eastern Time. Contact Feng and Job if you would like to join the working group. It will be starting next month. | ||
| - | * Mar 21, 2017 : [[https://docs.google.com/document/d/1RHgVLFZAM32PfNCguLf9G1LN2TU_73E-QWoOR-FdpLo/edit?usp=sharing|4DN SC Meeting Minutes 03-21-17]] | + | * **Mar 21, 2017 :** [[https://docs.google.com/document/d/1RHgVLFZAM32PfNCguLf9G1LN2TU_73E-QWoOR-FdpLo/edit?usp=sharing|4DN SC Meeting Minutes 03-21-17]] |
| * Meeting Agenda: [[https://drive.google.com/file/d/1NqwZzTcJhoB0TzopeDDksxlJG5pjOxYZQr-RckeTVbIGtKsNWlHEX-xepjsdfp6c_UopDJuQzKlM2p4S/view?usp=sharing|Link]] | * Meeting Agenda: [[https://drive.google.com/file/d/1NqwZzTcJhoB0TzopeDDksxlJG5pjOxYZQr-RckeTVbIGtKsNWlHEX-xepjsdfp6c_UopDJuQzKlM2p4S/view?usp=sharing|Link]] | ||
| * Documents for discussion: | * Documents for discussion: | ||
| Line 344: | Line 545: | ||
| * Contact with DCIC if you have some data to submit. Put your data in the pipeline, and we can actually see if the analysis works well. | * Contact with DCIC if you have some data to submit. Put your data in the pipeline, and we can actually see if the analysis works well. | ||
| - | * Feb 21, 2017 : [[https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/goog_1757750508|https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/goog_1757750508]][[https://drive.google.com/open?id=1NWb-2C99uXefP7fLH7Oh5qPyc4wxxkMwAcgCgu_75Hg|4DN SC Meeting Minutes 02-21-17]] | + | * **Feb 21, 2017 :** [[https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/goog_1757750508|https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/goog_1757750508]][[https://drive.google.com/open?id=1NWb-2C99uXefP7fLH7Oh5qPyc4wxxkMwAcgCgu_75Hg|4DN SC Meeting Minutes 02-21-17]] |
| * Meeting Agenda: [[https://drive.google.com/file/d/0B1Uh14Y8H75dZG5ma0pQcFR1cFE/view|Link]] | * Meeting Agenda: [[https://drive.google.com/file/d/0B1Uh14Y8H75dZG5ma0pQcFR1cFE/view|Link]] | ||
| * Documents for discussion: | * Documents for discussion: | ||
| Line 368: | Line 569: | ||
| ==== WebEx Meeting Information ==== | ==== WebEx Meeting Information ==== | ||
| - | **4DN Steering Committee Meeting**\\ The 3rd Tuesday of every month, from Tuesday, March 15, 2016, to no end date\\ 8:00 am | Pacific Daylight Time (San Francisco, GMT-07:00) | 1 hr 30 mins\\ <font inherit/inherit;;#2980b9;;inherit>**Join WebEx meeting**</font>\\ Meeting number: 808 364 213\\ Meeting password: KJCvJtWz\\ **Join by phone**\\ +1-415-655-0002 US Toll\\ Access code: 808 364 213\\ [[https://www.google.com/url?q=https://4dnucleome.webex.com/4dnucleome/j.php?MTID=md022622fbdf3035d6b3759a9662f6c9d&sa=D&sntz=1&usg=AFQjCNF8ixYJn4H56t5Sr-XDzR3xUdhHxQ|Add this meeting]] to your calendar. (Cannot add from mobile devices.)\\ Need help? Go to [[http://www.google.com/url?q=http://help.webex.com/&sa=D&sntz=1&usg=AFQjCNGpBrF-27EfgcXBaSCv_X_lSZu9Uw|http://help.webex.com]]. | + | **4DN Steering Committee Meeting**\\ The 3rd Tuesday of every month, from Tuesday, March 15, 2016, to no end date\\ 8:00 am | Pacific Daylight Time (San Francisco, GMT-07:00) | 1 hr 30 mins\\ <font inherit/inherit;;#2980b9;;inherit>**Join WebEx meeting**</font>\\ Meeting number: 808 364 213\\ Meeting password: KJCvJtWz\\ **Join by phone**\\ 1-415-655-0002 US Toll\\ Access code: 808 364 213\\ [[https://www.google.com/url?q=https://4dnucleome.webex.com/4dnucleome/j.php?MTID=md022622fbdf3035d6b3759a9662f6c9d&sa=D&sntz=1&usg=AFQjCNF8ixYJn4H56t5Sr-XDzR3xUdhHxQ|Add this meeting]] to your calendar. (Cannot add from mobile devices.)\\ Need help? Go to [[http://www.google.com/url?q=http://help.webex.com/&sa=D&sntz=1&usg=AFQjCNGpBrF-27EfgcXBaSCv_X_lSZu9Uw|http://help.webex.com]]. |
| <font 20px/inherit;;#e74c3c;;inherit>**In case we experience technical difficulties during the Steering Committee Meetings:**</font> | <font 20px/inherit;;#e74c3c;;inherit>**In case we experience technical difficulties during the Steering Committee Meetings:**</font> | ||
| Line 442: | Line 643: | ||
| This can be a list of all other working members in the committee. | This can be a list of all other working members in the committee. | ||
| - | {{cal>4dn-sc@4dnucleome.org[614,640]|Kite's Test}} | + | ===== Calendar ===== |
| + | |||
| + | {{url>https://calendar.google.com/calendar/embed?src=v78luds1c6s7f2d3p1qqd82dog@group.calendar.google.com&ctz=America/Los_Angeles 800,400 noborder|4DN OMICS WG Calendar}} | ||
| + | |||
| + | ---- | ||
| + | |||
| + | {{medialist>4dn:steering_committee:}} | ||