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--- 4dn:phase1:working_groups:data_analysis [2019/01/25 14:43]
rcalandrelli [Meetings]
+++ 4dn:phase1:working_groups:data_analysis [2025/04/22 16:21] (current)
@@ Line 1: / Line 1: @@
 ====== Data Analysis ======
+<font 20px/inherit;;#e74c3c;;inherit>**The mailing list for the working group has been changed. Please use [[analysis@4dnucleome.org]] from now on as the new mailing list address.**</font>
 ===== Introduction =====
@@ Line 23: / Line 25: @@
 ===== WebEx Meeting Information =====
-<font 20px/inherit;;inherit;;inherit>**Weekly Call - 4DN JAWG/DAWG Meeting \\
+<font 20px/inherit;;inherit;;inherit>**Weekly Call - 4DN JAWG/DAWG Meeting Every Thursday（from March 1, 2018)**</font>
-Every Thursday（from March 1, 2018)**</font>
 **1:00-2:00 pm ET (Eastern Time), 10:00-11:00 am PT (Pacific Time) **
-[[https://www.google.com/url?q=https://4dnucleome.webex.com/4dnucleome/j.php?MTID=m8ea943b4f866758ce61e412a002a8a95&sa=D&sntz=1&usg=AFQjCNF6uGcS20RnYEw3eNQCt5LdpcpmcQ|Click here to Join WebEx meeting]] \\
+[[https://www.google.com/url?q=https://4dnucleome.webex.com/4dnucleome/j.php?MTID=m8ea943b4f866758ce61e412a002a8a95&sa=D&sntz=1&usg=AFQjCNF6uGcS20RnYEw3eNQCt5LdpcpmcQ|Click here to Join WebEx meeting]]\\ Meeting number: 805 283 801\\ Meeting password: uJe93m63\\ Host key: 347076
-Meeting number: 805 283 801 \\
-Meeting password: uJe93m63 \\
-Host key: 347076
-**Join by phone** \\
+**Join by phone**\\ +1-415-655-0002 US Toll
-+1-415-655-0002 US Toll
 Access code: 805 283 801
@@ Line 43: / Line 40: @@
 <font inherit/inherit;;#2980b9;;inherit>**858-822-1626 (OFFICE)**</font>
-<font inherit/inherit;;#2980b9;;inherit>**619-734-5961 (CELL)**</font>
 ===== Meetings =====
-\\
+\\ **1/13/2016**
-**1/13/2016**
+  * **Links: **
-   * **Links: **
       * [[https://docs.google.com/document/d/1rjYIXarELOkSWwDjsejTeWHotVKIlydGR2XIsI3Nyw4/edit?usp=sharing|google doc page]].
       * [[https://docs.google.com/viewer?a=v&pid=sites&srcid=ZGVmYXVsdGRvbWFpbnw0ZG5kYXdpa2l8Z3g6N2UxYWQ3Nzk0N2U2MTg4NQ|Additional notes]].
- \\ **3/4/2016 **
+\\ **3/4/2016 **
   * **Agenda:**
       * Dekker lab HiC pipeline - Bryan Lajoie
@@ Line 64: / Line 56: @@
 **4/26/2016**
   * **Agenda:**
       * [[https://docs.google.com/viewer?a=v&pid=sites&srcid=ZGVmYXVsdGRvbWFpbnw0ZG5kYXdpa2l8Z3g6NzE3MzIxNWQ2NWZmYTQ3MA|Presentation on Hi-C quality and reproducibility metrics]] by Gurkan Yardimci from Bill Noble's group.
@@ Line 74: / Line 65: @@
 **Agenda:**
   * AWG+OMICS call. Presentations on loop detection from Erez Lieberman and [[https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/working-groups-list/data-analysis-wg/Gold Standard Discussion Ren 072016.pptx?attredirects=0|Bing Ren]]'s groups.
 **Links:**
   * [[http://www.google.com/url?q=http://pklab.med.harvard.edu/peterk/4dn/awg/AWG+OMICS joint call  benchmarking  loop detection-20160720 1629-1.arf&sa=D&sntz=1&usg=AFQjCNGi9pT8824uLCPV3VP_zGzftxV20w|Webex recording]].
   * [[https://docs.google.com/document/d/193FF2DJklhoBf7-bf0UgYeBeKkB2ThfffGxi9JY2WGw/edit|Minutes]].
 **8/3/2016**
   * **Agenda:**
       * AWG+OMICS call. Presentation from Yijun Ruan's group
@@ Line 90: / Line 78: @@
 **9/29/2016 **
   * **Links:**
       * [[https://docs.google.com/document/d/18meAIDn-m5j5dITktPiq7IW1tT9VoLigZkqILJoeSCE/edit?usp=sharing|Minutes]].
 **1/26/2017 **
   * **Agenda:**
       * HiC reproducibility metrics - Gurkan Yardimici from Bill Noble's group.
@@ Line 102: / Line 88: @@
 **3/23/2017**
   * **Agenda:**
       * Presentation by DCIC on uniform pipeline status and plans.
@@ Line 111: / Line 96: @@
 **4/6/2017 **
   * **Agenda:**
       * Presentation by Michael Sauria (James Taylor lab) on Hi-C reproducibility analysis
@@ Line 119: / Line 103: @@
 **4/20/2017**
   * **Agenda:**
       * DCIC updates / alignment (10minutes)
@@ Line 129: / Line 112: @@
 **5/4/2017**
   * **Agenda:**
       * DCIC updates (5minutes)
@@ Line 139: / Line 121: @@
 **5/18/2017**
   * **Agenda:**
       * Presentation by Francesco Ferrari on TAD callers
   * **Links:**
       * [[https://docs.google.com/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDo0OGIxZDFiOTQ4NmY1MmI4|Slides]].
-      * [[https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/working-groups-list/data-analysis-wg/dawg-meeting-notes-20170518|DAWG Meeting Notes 20170518]].
+      * [[4dn:phase1:data_analysis:dawg-meeting-notes-20170518|DAWG Meeting Notes 20170518]].
       * [[https://www.google.com/url?q=https://4dnucleome.webex.com/4dnucleome/ldr.php?RCID=179d1cdde5f4241f3b962f58f7b2c971&sa=D&sntz=1&usg=AFQjCNE942yNVAl2Sgg0mPlktnz5m3-d3w|Recording]].
       * [[https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/working-groups-list/data-analysis-wg/Ferrari_TADcalls.rar?attredirects=0&d=1|TAD calls.]]
 **6/1/2017**
   * **Agenda:**
       * Read filtering I: Mirny lab.
   * **Links:**
       * [[https://docs.google.com/presentation/d/1oZDoFMEFKz8JQUy-hx4roWcU_zP_9lzp2FwRuROkWEc/edit#slide=id.p|Slides]].
-      * [[https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/working-groups-list/data-analysis-wg/dawg-meeting-notes-20170601|DAWG Meeting Notes 20170601]].
+      * [[4dn:phase1:data_analysis:dawg-meeting-notes-20170601|DAWG Meeting Notes 20170601]].
       * [[https://www.google.com/url?q=https://4dnucleome.webex.com/4dnucleome/ldr.php?RCID=fc5b4225a0e391dd0ba2af58c1ff9a16&sa=D&sntz=1&usg=AFQjCNHTzMaG1VOA-T139mcvo2l8KAo1YA|Recording]].
 **6/15/2017**
   * **Agenda**
       * DCIC updates
@@ Line 164: / Line 143: @@
   * **Links**
       * [[https://docs.google.com/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDoyYzJmNzYyZjJlMWZkZTg1|Slides]].
-      * [[https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/working-groups-list/data-analysis-wg/dawg-meeting-notes-20170615|DAWG Meeting Notes 20170615]].
+      * [[4dn:phase1:data_analysis:dawg-meeting-notes-20170615|DAWG Meeting Notes 20170615]].
 **7/13/2017**
   * **Agenda**
       * Continuing on: Presentation by Francesco Ferrari on TAD callers
@@ Line 175: / Line 153: @@
 **8/3/2017**
   * **Agenda**
       * TAD Callers: continued discussion
@@ Line 183: / Line 160: @@
   * **Links**
       * [[https://docs.google.com/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDo2ZDgyYzEwYTdiNjEwNGUx|Arrowhead Slides]].
-      * [[https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/working-groups-list/data-analysis-wg/dawg-meeting-notes-20170803|DAWG Meeting Notes 20170803]].
+      * [[4dn:phase1:data_analysis:dawg-meeting-notes-20170803|DAWG Meeting Notes 20170803]].
       * [[https://www.google.com/url?q=https://4dnucleome.webex.com/4dnucleome/ldr.php?RCID=920d2ead6e130d3560c557271acea7cc&sa=D&sntz=1&usg=AFQjCNGyIM_k4bR0ZbsOqKYA0Sw7ORcMZQ|Recording]].
 **9/7/2017 **
   * **Agenda**
       * Defining contact domains: CTCF and cohesion depletion
@@ Line 197: / Line 173: @@
 <font 20px/inherit;;inherit;;inherit>Co-Chairs:</font>
-<font 20px/inherit;;inherit;;inherit>Peter Kharchenko, <peter_kharchenko@hms.harvard.edu> \\
+<font 20px/inherit;;inherit;;inherit>Peter Kharchenko, <peter_kharchenko@hms.harvard.edu>
 William Noble, <wnoble@uw.edu></font>
@@ Line 208: / Line 184: @@
 This can be a list of all other working members in the working group.
-===== Listserv =====
+===== Mailing list =====
-The Listserv to use for communication in this Working Group is <4DN-ANALYSIS@LIST.NIH.GOV>. Emails sent there will go to everyone on the list. Replying to an email from the list will also send it to everyone in the list. [[https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/working-groups-list/data-analysis-wg/Data Analysis Listserv info.pdf?attredirects=0&d=1|Detailed instructions on how to interact with the Listserv system are available]].
+The mailing list to use for communication in this Working Group is <analysis@4dnucleome.org>. Emails sent there will go to everyone on the list. Replying to an email from the list will also send it to everyone in the list.
 ===== Calendar =====
-<font inherit/inherit;;inherit;;#e74c3c>Insert calendar</font>
+{{url>https://calendar.google.com/calendar/embed?src=l83jh4t35tpd46ad6dq822ck78%40group.calendar.google.com&ctz=America%2FLos_Angeles 800,400 noborder|4DN Data Analysis WG Calendar}}

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