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4dn:phase1:working_groups:omics_data_standards:minutes-04-10-2017
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4dn:phase1:working_groups:omics_data_standards:minutes-04-10-2017 [2019/02/15 14:04] rcalandrelli created |
4dn:phase1:working_groups:omics_data_standards:minutes-04-10-2017 [2025/04/22 16:21] (current) |
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| * Submit with relatively little information about the experiment if SOP were followed. But submitter still needs to Indicate what cell lines was used and how was prepared, passage number etc. because there are variations in SOPs for each cell line. | * Submit with relatively little information about the experiment if SOP were followed. But submitter still needs to Indicate what cell lines was used and how was prepared, passage number etc. because there are variations in SOPs for each cell line. | ||
| - | {{:4dn:omics_data_standards:omics_04102017_1.png?nolink&500x379}} | + | {{4dn:phase1:working_groups:omics_data_standards:omics_04102017_1.png?nolink&500x379}} |
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| Second and third slides: Biosample | Second and third slides: Biosample | ||
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| * Biosample: has been divided in different objects. There is a description and type of the biosample. | * Biosample: has been divided in different objects. There is a description and type of the biosample. | ||
| * There is a controlled dictionary for all keywords and these will be available as options for submitters on the system. In you are using an existing Biosource for a particular Tier1 or other cell line, there is no need to fill out on the information of the organism in most cases (just choose the keywords). | * There is a controlled dictionary for all keywords and these will be available as options for submitters on the system. In you are using an existing Biosource for a particular Tier1 or other cell line, there is no need to fill out on the information of the organism in most cases (just choose the keywords). | ||
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| + | {{4dn:phase1:working_groups:omics_data_standards:omics_04102017_2.png?nolink&500x377}} | ||
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| + | {{4dn:phase1:working_groups:omics_data_standards:omics_04102017_3.png?nolink&500x377}} | ||
| Fourth slide: Biosample control information | Fourth slide: Biosample control information | ||
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| * There is a Google Doc by DCIC about these metadata entries and will be shared to OMICS by Burak. | * There is a Google Doc by DCIC about these metadata entries and will be shared to OMICS by Burak. | ||
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| + | {{4dn:phase1:working_groups:omics_data_standards:omics_04102017_4.png?nolink&500x380}} | ||
| NUMBER OF READS: | NUMBER OF READS: | ||
4dn/phase1/working_groups/omics_data_standards/minutes-04-10-2017.1550268278.txt.gz · Last modified: 2025/04/22 16:21 (external edit)