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4dn:phase1:working_groups:omics_data_standards
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Omics Data Standards
The mailing list for the working group has been changed. Please use omics@4dnucleome.org from now on as the new mailing list address.
Introduction
The Omics Data Standard Working Group will establish common standards, quality metrics, and data formats for the Omics experiments, datasets, and feature annotations to be produced and released by the 4DN consortium.
Mission / Objectives
The Omics Data Standard Working Group will establish common standards, quality metrics, and data formats for the Omics experiments, datasets, and feature annotations to be produced and released by the 4DN consortium.
Omics Standards Discussion Group
The Omics Standards Discussion Group (click link to follow) has been created to enable discussions on detailed experimental parameters (for example, ChIP-Seq antibodies) for all technologies involved within the network.
All 4DN members are encouraged to apply if their work involves any of the related technologies. If you wish to receive email updates for everything happening in this group, please use the button “Apply to join group” above, set your email preferences in “Email delivery preference” in the popped up panel, tell us who you are (name and affiliation) and, if you are not a 4DN PI, which 4DN PI you are associated with, then click Apply to join this group.
Meetings
Omics conference meetings are held twice a month via WebEx, on the 2nd and 4th Monday of each month at 11am PST/1pm CST/2pmEST. Each call lasts approximately 1 hour. WebEx conference calls information is below.
Please use the following link to incorporate edits and protocol changes ahead of time:
https://docs.google.com/document/d/1BBHkwrilTaL6N8dQ-QJE5KXKRrZaox3hD7XdEoVyII8/edit
WebEx info Call-Second Monday The 2nd Monday of every month from Monday, March 14, 2016, to Monday December 11, 201 11:00 am| Pacific Daylight Time (San Francisco, GMT-07:00| 1hr Meeting number: 805 470 441 Meeting password: KME4Q7Ew Join by phone +1-415-655-0002 US Toll Access code: 805 470 441 | WebEx info Call-Fourth Monday The 4th Monday of every month from Monday, May 23, 2016 , to no end date 11:00 am| Pacific Daylight Time (San Francisco, GMT-07:00| 1hr Meeting number: 807 058 449 Meeting password: pJhzCW2m Join by phone +1-415-655-0002 US Toll Access code: 807 058 449 |
The Allele Specific Omics Data Standards Group will meet 2nd and 4th Wednesdays of the month at 10AM PT (1PM EST). The first call will be on Nov 22, 2017.
WebEx info Call-Second Wednesday The 2nd Wednesday of every month from Wednesday, December 13, 2017, to no end date 10:00 am| Pacific Daylight Time (San Francisco, GMT-07:00| 1hr Meeting number: 804 302 182 Meeting password: PTPvVvF8 Join by phone +1-415-655-0002 US Toll Access code: 804 302 182 | WebEx info Call-Fourth Wednesday The 4th Wednesday of every month from Wednesayday, November 22, 2017, to no end date 10:00 am| Pacific Daylight Time (San Francisco, GMT-07:00| 1hr Meeting number: 806 649 089 Meeting password: 9rkJs4Mb Join by phone +1-415-655-0002 US Toll Access code: 806 649 089 |
The Single Cell Standards Group will meet 1st and 3rd Wednesdays of the month at 9AM PT (12PM EST). The first call will be on Nov 15.
WebEx info Call-First Wednesday The 1st Wednesday of every month from Wednesday, December 6, 2017, to no end date 9:00 am| Pacific Daylight Time (San Francisco, GMT-07:00| 1hr Meeting number: 801 959 044 Meeting password: UvGRxga4 Join by phone +1-415-655-0002 US Toll Access code: 801 959 044 | WebEx info Call- Third Wednesday The 3rd Wednesday of every month from Wednesday, November 15, 2017 , to no end date 9:00 am| Pacific Daylight Time (San Francisco, GMT-07:00| 1hr Meeting number: 805 001 599 Meeting password: Ustw3jZi Join by phone +1-415-655-0002 US Toll Access code: 805 001 599 |
WEBEX CONTACT INFORMATION:
Catherine Rivera-Noel oh@4dnucleome.org
Documents
| Meeting Date | Agenda | Minutes |
|---|---|---|
12-11-2015 |
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| 2-8-2016 | Erez gave a presentation focused on the analysis pipeline of in situ HiC data. The software includes: mapping, normalization, reproducibility analysis, domain calls, loop calls, and visualization. The package is publicly available at GitHub. | |
| 2-22-2016 | ||
| 3-14-2016 | ||
| 3-28-2016 | ||
| 5-23-2016 |
| |
| 6-13-2016 |
|
Meeting minutes |
| 6-27-2016 |
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| 7-11-2016 |
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| 7-25-2016 |
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| 8-8-2016 |
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| 8-22-2016 | ||
| 9-12-2016 | ||
| 9-26-2016 |
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| 10-24-2016 |
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| 11-14-2016 |
| |
| 11-28-2016 |
|
Meeting minutes |
| 12-12-2016 |
|
Meeting minutes |
| 1-9-2017 |
| |
| 2-13-2017 |
|
Presentation from Rongxin Fang |
| 2-27-2017 |
| |
| 3-13-2017 |
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| 4-10-2017 |
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| 4-24-2017 |
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| 5-8-2017 |
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| 5-22-2017 | ||
| 6-12-2017 |
| |
| 6-26-2017 |
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| 7-10-2017 |
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| 7-24-2017 |
|
ChIA-PET updated protocol |
| 8-14-2017 |
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| 8-28-2017 |
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| 10-9-2017 |
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| 10-23-2017 |
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| 11-13-2017 |
|
Meeting minutes |
| 11-27-2017 |
| |
| 1-8-2018 |
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| 1-22-2018 |
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| 2-12-2018 |
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| 2-26-2018 |
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| 3-12-2018 |
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| 4-9-2018 |
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| 5-14-2018 |
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| 6-11-2018 |
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| 6-25-2018 |
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| 7-23-2018 | ||
| 8-13-2018 |
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| 9-10-2018 |
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| 11-19-2018 |
|
Meeting minutes |
| 1-28-2019 |
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| 2-25-2019 |
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| 3-25-2019 |
| Presentation by Miao Yu |
2020 Meetings |
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| 3-23-2020 |
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| 4-27-2020 |
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| 6-22-2020 |
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Mailing list
The mailing list to use for communication in this Working Group is omics@4dnucleome.org. Emails sent there will go to everyone on the list. Replying to an email from the list will also send it to everyone in the list.
Calendar
4dn/phase1/working_groups/omics_data_standards.txt · Last modified: 2025/04/22 16:21 (external edit)