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4dn:phase1:working_groups:omics_data_standards [2020/06/30 13:48]
x6fan [Meetings] 		4dn:phase1:working_groups:omics_data_standards [2025/04/22 16:21] (current)
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-05-23-2016|Meeting minutes]]+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-05-23-2016|Meeting minutes]]
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-06-13-2016|Meeting minutes]]\\ Google docs links for [[https://​docs.google.com/​document/​d/​1BBHkwrilTaL6N8dQ-QJE5KXKRrZaox3hD7XdEoVyII8/​edit?​usp=sharing|experiment protocols]] and [[https://​docs.google.com/​document/​d/​1WmLyQ7PFQlBn2z4vDMKkmOAxFEZw9dJou7-AjoKHNVs/​edit|data formats]], for suggestions and comments+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-06-13-2016|Meeting minutes]]\\ Google docs links for [[https://​docs.google.com/​document/​d/​1BBHkwrilTaL6N8dQ-QJE5KXKRrZaox3hD7XdEoVyII8/​edit?​usp=sharing|experiment protocols]] and [[https://​docs.google.com/​document/​d/​1WmLyQ7PFQlBn2z4vDMKkmOAxFEZw9dJou7-AjoKHNVs/​edit|data formats]], for suggestions and comments
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-06-27-2016|Meeting minutes]]+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-06-27-2016|Meeting minutes]]
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-07-25-2016|Meeting minutes ]]+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-07-25-2016|Meeting minutes ]]
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-08-08-2016|Meeting minutes]]+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-08-08-2016|Meeting minutes]]
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-08-22-2016|Meeting minutes]]+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-08-22-2016|Meeting minutes]]
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-09-12-2016|Meeting minutes ]]+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-09-12-2016|Meeting minutes ]]
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-09-26-2016|Meeting minutes]]+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-09-26-2016|Meeting minutes]]
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-10-24-2016|Meeting minutes]]+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-10-24-2016|Meeting minutes]]
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-11-14-2016|Meeting minutes]]+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-11-14-2016|Meeting minutes]]
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-11-28-2016|Meeting minutes]]\\ Presentation+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-11-28-2016|Meeting minutes]]\\ Presentation
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-12-12-2016|Meeting minutes]]\\ Presentation from Suhas Rao+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-12-12-2016|Meeting minutes]]\\ Presentation from Suhas Rao
  
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-[[https://​docs.google.com/​viewer?​a=v&​pid=sites&​srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDozYTM1N2M2MzI4MDJkMWI|Draft ChIP-PET protocol (from Y Ruan)]]\\ [[:4dn:​working_groups:​omics_data_standards:​minutes-01-09-2017|Meeting minutes]]+[[https://​docs.google.com/​viewer?​a=v&​pid=sites&​srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDozYTM1N2M2MzI4MDJkMWI|Draft ChIP-PET protocol (from Y Ruan)]]\\ [[4dn:phase1:​working_groups:​omics_data_standards:​minutes-01-09-2017|Meeting minutes]]
  
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-Presentation from Rongxin Fang\\ [[:4dn:​working_groups:​omics_data_standards:​minutes-02-13-2017|Meeting minutes]]+Presentation from Rongxin Fang\\ [[4dn:phase1:​working_groups:​omics_data_standards:​minutes-02-13-2017|Meeting minutes]]
  
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-[[https://​docs.google.com/​spreadsheets/​d/​1eNajg-wroy9Ruj7xAj6i087nm-eM54ueFrBuP5m7JsU/​edit?​usp=sharing|Spreadsheet for tentative future topics and date]]\\ [[:4dn:​working_groups:​omics_data_standards:​minutes-02-27-2017|Meeting minutes]]+[[https://​docs.google.com/​spreadsheets/​d/​1eNajg-wroy9Ruj7xAj6i087nm-eM54ueFrBuP5m7JsU/​edit?​usp=sharing|Spreadsheet for tentative future topics and date]]\\ [[4dn:phase1:​working_groups:​omics_data_standards:​minutes-02-27-2017|Meeting minutes]]
  
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-[[https://​docs.google.com/​viewer?​a=v&​pid=sites&​srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDo3OGQxYjE1YmU1NWUzNWYz|Slides for Repli-seq]]\\ [[:4dn:​working_groups:​omics_data_standards:​minutes-03-13-2017|Meeting minutes]]+[[https://​docs.google.com/​viewer?​a=v&​pid=sites&​srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDo3OGQxYjE1YmU1NWUzNWYz|Slides for Repli-seq]]\\ [[4dn:phase1:​working_groups:​omics_data_standards:​minutes-03-13-2017|Meeting minutes]]
  
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-[[https://​docs.google.com/​viewer?​a=v&​pid=sites&​srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDo3MWQ2MjlkMDU4OTAzYjBi|DCIC Metadata Slides]]\\ [[:4dn:​working_groups:​omics_data_standards:​minutes-04-10-2017|Meeting minutes]]+[[https://​docs.google.com/​viewer?​a=v&​pid=sites&​srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDo3MWQ2MjlkMDU4OTAzYjBi|DCIC Metadata Slides]]\\ [[4dn:phase1:​working_groups:​omics_data_standards:​minutes-04-10-2017|Meeting minutes]]
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-04-24-2017|Meeting minutes]]\\ [[https://​docs.google.com/​viewer?​a=v&​pid=sites&​srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDo2MmU5ZmEyNGM2OGY5MDJj|DCIC presentation]]+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-04-24-2017|Meeting minutes]]\\ [[https://​docs.google.com/​viewer?​a=v&​pid=sites&​srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDo2MmU5ZmEyNGM2OGY5MDJj|DCIC presentation]]
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-05-08-2017|Meeting minutes]]+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-05-08-2017|Meeting minutes]]
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-05-22-2017|Meeting minutes]]+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-05-22-2017|Meeting minutes]]
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-06-12-2017|Meeting minutes]]+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-06-12-2017|Meeting minutes]]
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-06-26-2017|Meeting minutes]]+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-06-26-2017|Meeting minutes]]
  
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-[[https://​docs.google.com/​viewer?​a=v&​pid=sites&​srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDo0N2M0MWNkNTlkYjFjM2Qw|DCIC update slides]]\\ [[:4dn:​working_groups:​omics_data_standards:​minutes-07-10-2017|Meeting minutes]]+[[https://​docs.google.com/​viewer?​a=v&​pid=sites&​srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDo0N2M0MWNkNTlkYjFjM2Qw|DCIC update slides]]\\ [[4dn:phase1:​working_groups:​omics_data_standards:​minutes-07-10-2017|Meeting minutes]]
  
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-ChIA-PET updated protocol\\ [[https://​docs.google.com/​a/​4dnucleome.org/​viewer?​a=v&​pid=sites&​srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDoxYWNiZWJlNmQ2MzEyOWUw|ChIA-PET slides]]\\ [[:4dn:​working_groups:​omics_data_standards:​minutes-07-24-2017|Meeting minutes]]+ChIA-PET updated protocol\\ [[https://​docs.google.com/​a/​4dnucleome.org/​viewer?​a=v&​pid=sites&​srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDoxYWNiZWJlNmQ2MzEyOWUw|ChIA-PET slides]]\\ [[4dn:phase1:​working_groups:​omics_data_standards:​minutes-07-24-2017|Meeting minutes]]
  
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-[[https://​docs.google.com/​viewer?​a=v&​pid=sites&​srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDo1OGQ5MDU4M2UwMjNhZGNh|DCIC slides]]\\ [[https://​docs.google.com/​document/​d/​1ti2YJ-gHSBCBq4DL5iMdCFDE_bQP1LCgJFfEYTte0iY/​edit#​heading=h.uvjjc19carml|DCIC document ]]\\ [[:4dn:​working_groups:​omics_data_standards:​minutes-08-14-2017|Meeting minutes]]+[[https://​docs.google.com/​viewer?​a=v&​pid=sites&​srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDo1OGQ5MDU4M2UwMjNhZGNh|DCIC slides]]\\ [[https://​docs.google.com/​document/​d/​1ti2YJ-gHSBCBq4DL5iMdCFDE_bQP1LCgJFfEYTte0iY/​edit#​heading=h.uvjjc19carml|DCIC document ]]\\ [[4dn:phase1:​working_groups:​omics_data_standards:​minutes-08-14-2017|Meeting minutes]]
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-08-28-2017|Meeting minutes]]+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-08-28-2017|Meeting minutes]]
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-10-09-2017|Meeting minutes]]+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-10-09-2017|Meeting minutes]]
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-10-23-2017|Meeting minutes]]+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-10-23-2017|Meeting minutes]]
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-11-13-2017|Meeting minutes]]\\ Slides+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-11-13-2017|Meeting minutes]]\\ Slides
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-11-27-2017|Meeting minutes]]+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-11-27-2017|Meeting minutes]]
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-01-08-2018|Meeting minutes]]+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-01-08-2018|Meeting minutes]]
  
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-[[https://​drive.google.com/​file/​d/​17hkhfodJ-XnRME38hWfPGWXHAP69IcyR/​view|SPRITE protocol]]\\ [[:4dn:​working_groups:​omics_data_standards:​minutes-01-22-2018|Meeting minutes]]+[[https://​drive.google.com/​file/​d/​17hkhfodJ-XnRME38hWfPGWXHAP69IcyR/​view|SPRITE protocol]]\\ [[4dn:phase1:​working_groups:​omics_data_standards:​minutes-01-22-2018|Meeting minutes]]
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-02-12-2018|Meeting minutes]]+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-02-12-2018|Meeting minutes]]
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-02-26-2018|Meeting minutes]]+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-02-26-2018|Meeting minutes]]
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-03-12-2018|Meeting minutes]]\\ [[https://​docs.google.com/​a/​4dnucleome.org/​viewer?​a=v&​pid=sites&​srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDozZjUyMDBkZTk0NTZjZmI4|Presentation for Single cell Hi-C from Peter Fraser Lab]]+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-03-12-2018|Meeting minutes]]\\ [[https://​docs.google.com/​a/​4dnucleome.org/​viewer?​a=v&​pid=sites&​srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDozZjUyMDBkZTk0NTZjZmI4|Presentation for Single cell Hi-C from Peter Fraser Lab]]
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-04-09-2018|Meeting minutes]]+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-04-09-2018|Meeting minutes]]
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-05-14-2018|Meeting minutes]]+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-05-14-2018|Meeting minutes]]
  
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-[[:4dn:​protocols:​damid|Wiki page for DamID]]\\ [[:4dn:​working_groups:​omics_data_standards:​minutes-06-11-2018|Meeting minutes]]+[[4dn:phase1:​protocols:​damid|Wiki page for DamID]]\\ [[4dn:phase1:​working_groups:​omics_data_standards:​minutes-06-11-2018|Meeting minutes]]
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-06-25-2018|Meeting minutes]]+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-06-25-2018|Meeting minutes]]
  
 </​WRAP>​~~TABLE_CELL_WRAP_STOP~~| </​WRAP>​~~TABLE_CELL_WRAP_STOP~~|
 |7-23-2018|~~TABLE_CELL_WRAP_START~~<​WRAP>​ |7-23-2018|~~TABLE_CELL_WRAP_START~~<​WRAP>​
  
-  * Discuss and vote on the DamID protocol (see link [[:4dn:​protocols:​damid|here]]). This was presented on June 11th.+  * Discuss and vote on the DamID protocol (see link [[4dn:phase1:​protocols:​damid|here]]). This was presented on June 11th.
  
   * Discussion and vote on the Cut&Run protocol (see link [[https://​www.google.com/​url?​q=https://​www.nature.com/​articles/​nprot.2018.015.epdf?​author_access_token=vf_ylGdH8oTFIbGYdyahH9RgN0jAjWel9jnR3ZoTv0NOQV_YOinFX53TT-yN_6ziKCqbazelkV5TLOcj4FgNB72aCjfEhYgiGP0HE3gHZJbRtWNmNoZwyH7Y6HToKMfQ&​sa=D&​sntz=1&​usg=AFQjCNECGEGq02z8erEG0gwEFw9TpUF8cA|here]]). This was presented on June 25th.   * Discussion and vote on the Cut&Run protocol (see link [[https://​www.google.com/​url?​q=https://​www.nature.com/​articles/​nprot.2018.015.epdf?​author_access_token=vf_ylGdH8oTFIbGYdyahH9RgN0jAjWel9jnR3ZoTv0NOQV_YOinFX53TT-yN_6ziKCqbazelkV5TLOcj4FgNB72aCjfEhYgiGP0HE3gHZJbRtWNmNoZwyH7Y6HToKMfQ&​sa=D&​sntz=1&​usg=AFQjCNECGEGq02z8erEG0gwEFw9TpUF8cA|here]]). This was presented on June 25th.
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-07-23-2018|Meeting minutes]]+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-07-23-2018|Meeting minutes]]
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-08-13-2018|Meeting minutes]]+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-08-13-2018|Meeting minutes]]
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-09-10-2018|Meeting minutes]]+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-09-10-2018|Meeting minutes]]
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-11-19-2018|Meeting minutes]]\\ [[https://​docs.google.com/​viewer?​a=v&​pid=sites&​srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDozZWVjOGY4YTk0Y2RhN2M1|Presentation by Miao Yu.]]~~CKG_TABLE_NBSP~~"​Optimization and Comparison of PLAC-seq and HiChIP protocols"​+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-11-19-2018|Meeting minutes]]\\ [[https://​docs.google.com/​viewer?​a=v&​pid=sites&​srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDozZWVjOGY4YTk0Y2RhN2M1|Presentation by Miao Yu.]]~~CKG_TABLE_NBSP~~"​Optimization and Comparison of PLAC-seq and HiChIP protocols"​
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-01-28-2019|Meeting minutes]]+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-01-28-2019|Meeting minutes]]
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-02-25-2019|Meeting minutes]]+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-02-25-2019|Meeting minutes]]
  
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-[[:4dn:​working_groups:​omics_data_standards:​minutes-03-25-2019|Meeting minutes]]+[[4dn:phase1:​working_groups:​omics_data_standards:​minutes-03-25-2019|Meeting minutes]]
  
 Presentation by Miao Yu Presentation by Miao Yu
4dn/phase1/working_groups/omics_data_standards.1593550094.txt.gz · Last modified: 2025/04/22 16:21 (external edit)

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