4DN Google Drive folder: https://drive.google.com/drive/folders/1Q1mzBETKDLLnMviloMVGCieBNNqKbP36?usp=sharing

Scientific Webinar Calendar: click here to add all the Scientific Webinar events to your personal calendar

Scientific Webinar Assignments (2021-2024): docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing

The 4DN Consortium Scientific Webinar Series is designed to promote sharing ideas and establishment of new collaborations among the consortium members. It features scientific presentations by 4DN member group. These presentations are focused on new discoveries, and new approaches and are not meant to be high-level summaries of deliverables/objectives of each project as in annual consortium meetings. Each group is strongly encouraged to present unpublished research. The PI of each member group may designate either themselves or members of their group to give the presentation.

The format of this webinar series will consist of hour-long online video conferences. Each Webinar will feature two presentations, with each presentation allocated 20’ of talk time followed by 10’ of discussion. All member groups of 4DN consortium are expected to present once in this round, although some centers may present twice given the size of their grants.

The Webinar organization committee has discussed and come up with a schedule for presentations after February 2021. See the schedule here: Scientific Webinar Assignment 2021-2024.

The schedule is ranked by funded project and the corresponding PI's last name. While the corresponding PI is put in the presentation slot, it is up to the corresponding PI to decide who in their team is to give the talk. It is encouraged that trainees are given the chance to present. If the corresponding PI wants to switch with someone else on the list in a mutual agreement, then she/he has the responsibility to arrange it and let the Webinar organization committee know.

Scientific Webinar Committee: Ana Pombo, Golnaz Vahedi, Sheng Zhong, Ting Wang, Wenbo Li, Sui Huang, Yin Shen, Taekjip Ha

July 23, 2021

Moderator: Yin Shen

Presenter: Ruochi Zhang (Carnegie Mellon University) - “Multiscale and integrative single-cell Hi-C analysis” (Link to presenter slides)

Presenter: Warren Winick-Ng (Berlin Institute for Medical Systems Biology) - “ Cell-type specialization in the brain is encoded by specific long-range chromatin topologies” (Link to presenter slides)

• Scientific Webinar presentations (Phase 1) can be found here.
• Scientific Webinar presentations (Phase 2) can be found here.

July 23, 2021

8:00-8:30 am Pacific Time, 20 minutes talk, then 10 minutes Q&A

Ruochi Zhang

ruochiz@andrew.cmu.edu

Title: Multiscale and integrative single-cell Hi-C analysis

Ruochi Zhang is a 4th-year Ph.D. student in the lab of Dr. Jian Ma in the School of Computer Science at Carnegie Mellon University. His research interests lie at the intersection of machine learning and computational genomics. His PhD work has been focused on developing new graph representation learning methods with a wide range of applications in studying nuclear organization.

8:30-8:50 am Pacific Time, 20 minutes talk, then 10 minutes Q&A

Warren Winick-Ng

Warren.Winick-Ng@mdc-berlin.de

Title: “Cell-type specialization in the brain is encoded by specific long-range chromatin topologies”

I completed my Bachelor and Master of Science degrees at the University of Guelph, Canada. During my PhD training I worked with Dr. Jane Rylett at Western University, Canada, where I identified a human specific protein involved in the chromatin organization of regulatory pathways disrupted in Alzheimer’s disease. For my postdoctoral work, I joined Prof. Ana Pombo at the Berlin Institute for Medical Systems Biology, MDC, in Berlin. My research focuses on understanding how specialized genome structures regulate gene expression in complex tissues, such as the brain.

The Webinar Series will be on the 4th Friday of each month from 8am-9am Pacific Time, 11am-12pm Eastern Time.

Join Zoom Meeting
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During Presentation:

ATTENDEES, PLEASE:

• MUTE YOUR COMPUTER MICROPHONE WHEN JOINING THE WEBINAR

• LET THE MODERATOR KNOW THAT YOU HAVE A QUESTION VIA CHAT

• QUESTIONS WILL BE ADDRESSED AT THE END OF EACH PRESENTATION, DURING THE DISCUSSION PERIODS

Next Scientific Webinar Presentation

When: August 27, 2021

Moderator: Taekjip Ha

Presenters:

• Member from R. David Hawkin's group (Presenter and title will be determined by group)
• Member from Jennifer Phillips-Cremins (contact), Rajan Jain, Eric Joyce, Melike Lakadamyali, Golnaz Vahedi's group (Presenter and title will be determined by group)