4DN Google Drive folder: https://drive.google.com/drive/folders/1Q1mzBETKDLLnMviloMVGCieBNNqKbP36?usp=sharing

Scientific Webinar Calendar: click here to add all the Scientific Webinar events to your personal calendar

Scientific Webinar Assignments (2021-2024): docs.google.com/spreadsheets/d/122eouLgJtMoCJNKmNhygufdU1qqEy-dDomxqqyQ1TxM/edit?usp=sharing

The 4DN Consortium Scientific Webinar Series is designed to promote sharing ideas and establishment of new collaborations among the consortium members. It features scientific presentations by 4DN member group. These presentations are focused on new discoveries, and new approaches and are not meant to be high-level summaries of deliverables/objectives of each project as in annual consortium meetings. Each group is strongly encouraged to present unpublished research. The PI of each member group may designate either themselves or members of their group to give the presentation.

The format of this webinar series will consist of hour-long online video conferences. Each Webinar will feature two presentations, with each presentation allocated 20’ of talk time followed by 10’ of discussion. All member groups of 4DN consortium are expected to present once in this round, although some centers may present twice given the size of their grants.

The Webinar organization committee has discussed and come up with a schedule for presentations after February 2021. See the schedule here: Scientific Webinar Assignment 2021-2024.

The schedule is ranked by funded project and the corresponding PI's last name. While the corresponding PI is put in the presentation slot, it is up to the corresponding PI to decide who in their team is to give the talk. It is encouraged that trainees are given the chance to present. If the corresponding PI wants to switch with someone else on the list in a mutual agreement, then she/he has the responsibility to arrange it and let the Webinar organization committee know.

Scientific Webinar Committee: Ana Pombo, Golnaz Vahedi, Sheng Zhong, Ting Wang, Wenbo Li, Sui Huang, Yin Shen, Taekjip Ha

April 28, 2023

Moderator: Wenbo Li

Presenter: Riccardo Calandrelli (University of California San Diego) - “”Genome-wide analysis of the interplay between chromatin-associated RNA and 3D genome organization in human cells” (Link to presenter slides)

Presenter: Jessica Lam (Children's Hospital of Philadelphia) - “Exploiting cell cycle dynamics to interrogate YY1’s role in chromatin organization” (Link to presenter slides)

• Scientific Webinar presentations (Phase 1) can be found here.

• Scientific Webinar presentations (Phase 2) can be found here.

April 28, 2023

8:00-8:30 am Pacific Time (20 minute presentation, 10 minute QA)

Riccardo Calandrelli

Research Associate

rcalandrelli@eng.ucsd.edu

Title: “Genome-wide analysis of the interplay between chromatin-associated RNA and 3D genome organization in human cells“

Riccardo Calandrelli is a Bioinformatics Research Associate who works in the laboratory of Prof. Sheng Zhong at the University of California San Diego. He received his Bachelor’s and Master’s degree in Biomedical Engineering from the University of Pisa (Italy). With expertise in computational methods and genome biology, Riccardo’s research focuses on multiple areas of epigenetics, from the 3D genome architecture and the role of RNA in genome structure and gene regulation, to spatial transcriptomics at high resolution, Alzheimer's disease and endothelial cell dysfunction in diabetes.

8:30-9:00 am Pacific Time (20 minute presentation, 10 minute QA)

Jessica Lam

Graduate Student

Jessica.Lam@pennmedicine.upenn.edu

Title: “Exploiting cell cycle dynamics to interrogate YY1’s role in chromatin organization”

Jessica Lam is a graduate student in Gerd Blobel's lab at the Children's Hospital of Philadelphia. She is an MD-PhD candidate in the Genomics and Computational Biology program at the University of Pennsylvania. Jessica is currently investigating the re-establishment of genome organization and gene expression during the mitosis-to-G1 transition.

The Webinar Series will be on the 4th Friday of each month from 8am-9am Pacific Time, 11am-12pm Eastern Time.

4DN OH is inviting you to a scheduled Zoom meeting.

Topic: 4DN Scientific Webinar
Please download and import the following iCalendar (.ics) files to your calendar system.
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During Presentation:

ATTENDEES, PLEASE:

• MUTE YOUR COMPUTER MICROPHONE WHEN JOINING THE WEBINAR

• LET THE MODERATOR KNOW THAT YOU HAVE A QUESTION VIA CHAT

• QUESTIONS WILL BE ADDRESSED AT THE END OF EACH PRESENTATION, DURING THE DISCUSSION PERIODS

Next Scientific Webinar Presentation

When: May 26, 2023

Moderator: Taekjip Ha

• Presenter from Taekjip Ha (contact), Margaret Johnson, Carl Wu's team
• Presenter from Jian Ma (contact) Frank Alber, Andrew Belmont, Chao-Ting Wu's team