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4dn:phase2:working_groups:joint_analysis
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4dn:phase2:working_groups:joint_analysis [2021/01/08 11:45] Ran [Joint Analysis] |
4dn:phase2:working_groups:joint_analysis [2025/04/22 16:21] (current) |
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| - | ====== Joint Analysis ====== | + | ====== Joint Analysis (JAWG) ====== |
| - | Point people/organizers: Feng Yue, Job Dekker, Bill Noble | + | **Point people/organizers:** //Feng Yue, Job Dekker, Bill Noble// |
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| + | <font inherit/inherit;;#c0392b;;inherit>**4DN Google Drive folder: **</font>[[https://drive.google.com/drive/folders/1-cfgD8blopeOKRRXJUhhgBbhIzPAmNkm?usp=sharing|https://drive.google.com/drive/folders/1-cfgD8blopeOKRRXJUhhgBbhIzPAmNkm?usp=sharing]] | ||
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| + | **<font inherit/inherit;;#c0392b;;inherit>4DN Calendar:</font> ** [[https://wiki.4dnucleome.org/4dn:calendar_4dn|https://wiki.4dnucleome.org/4dn:calendar_4dn]] ([[https://ics.teamup.com/feed/ksrqw1wb728dtrxdvg/8852681.ics|click here]] to add this specific WG calendar to your personal calendar) | ||
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| + | <font inherit/inherit;;#c0392b;;inherit>**Meeting attendee spreadsheet:**</font> [[https://docs.google.com/spreadsheets/d/1JmZ51QoiDfQhmZxrjf1tmD2KjPr7Yj7SfbWGxH4ZU08/edit?usp=sharing|https://docs.google.com/spreadsheets/d/1JmZ51QoiDfQhmZxrjf1tmD2KjPr7Yj7SfbWGxH4ZU08/edit?usp=sharing]] | ||
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| + | <font inherit/inherit;;#c0392b;;inherit>**Email list:**</font> <meeting-4dn-dj@4dnucleome.org> | ||
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| + | <font inherit/inherit;;#c0392b;;inherit>**Slack channel:**</font> #wg-joint-analysis | ||
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| + | **[[https://docs.google.com/spreadsheets/d/12tFfqxGBEtUqldazZoAxfSlkteyEp3MAE4K9RjaCE0M/edit?usp=sharing|Contact list for methods comparisons]]** | ||
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| + | ===== Objective ===== | ||
| <font 12pt/inherit;;inherit;;inherit><font inherit/Cambria;;inherit;;inherit>**<font inherit/Arial;;inherit;;inherit>The mission of the Joint Analysis Working Group is to explore, stimulate, facilitate and coordinate collaborative projects across the 4D Nucleome Network.</font>** </font></font> | <font 12pt/inherit;;inherit;;inherit><font inherit/Cambria;;inherit;;inherit>**<font inherit/Arial;;inherit;;inherit>The mission of the Joint Analysis Working Group is to explore, stimulate, facilitate and coordinate collaborative projects across the 4D Nucleome Network.</font>** </font></font> | ||
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| <font 12pt/inherit;;inherit;;inherit><font inherit/Cambria;;inherit;;inherit><font inherit/Arial;;inherit;;inherit>Second, the working group aims to bring together representatives of all member groups of the 4D Nucleome Network to explore new collaborative projects. Once projects are defined, progress and coordination of the projects will be facilitated through bi-weekly meetings. The working group will closely interact with the 4DN data portal to enable data sharing between members and the 4D Nucleome Network in general.</font></font></font> | <font 12pt/inherit;;inherit;;inherit><font inherit/Cambria;;inherit;;inherit><font inherit/Arial;;inherit;;inherit>Second, the working group aims to bring together representatives of all member groups of the 4D Nucleome Network to explore new collaborative projects. Once projects are defined, progress and coordination of the projects will be facilitated through bi-weekly meetings. The working group will closely interact with the 4DN data portal to enable data sharing between members and the 4D Nucleome Network in general.</font></font></font> | ||
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| + | ===== Plans and Documents ===== | ||
| [[https://docs.google.com/document/d/14GrmHI2UOcTRVGIex2WGwDT3waZYZxrhkDyj6_5gJWg/edit?usp=sharing|Agendas and minutes from phone calls]] | [[https://docs.google.com/document/d/14GrmHI2UOcTRVGIex2WGwDT3waZYZxrhkDyj6_5gJWg/edit?usp=sharing|Agendas and minutes from phone calls]] | ||
| - | [[https://docs.google.com/spreadsheets/d/1ONfcbvM1iP30vhStJuOemho039hMA0juFvjEU92zse4/edit#gid=0|Data generation plan (Google sheets)]] | + | **[[https://data.4dnucleome.org/help/submitter-guide/submitting_processed_results|Guide for submitting derived data files to 4DN data portal]]** |
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| + | [[https://data.4dnucleome.org/joint-analysis|Joint Analysis Datasets @ DCIC data portal]] | ||
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| + | [[https://wiki.4dnucleome.org/4dn:phase2:working_groups:jawg_sandbox?s[]=sandbox|Data analysis sandbox, with links to analysis products]] | ||
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| + | [[https://docs.google.com/document/d/1b3hJL0Dh_bJqyzFoYsNgzv4j-gM0k5Lqss3qeF1k5NY/edit?usp=sharing|Joint Analysis Marker Paper Outline]] (link updated on 2/4/2021) | ||
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| + | [[https://docs.google.com/spreadsheets/d/1TCmDxJ5xCcOkeHrliMwesqgDZS9PeS-bgXVKTv26tWM/edit?usp=sharing|Joint Analysis paper plan tracking table]] | ||
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| + | ===== Joint Analysis Presentations ===== | ||
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| + | We encourage to share your slides. All the slides are only shared within the 4DN network. They are stored in 4DN Google Drive. You need to use your 4DN associated google account to view the slides. | ||
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| + | Please visit [[https://wiki.4dnucleome.org/4dn:phase1:working_groups:joint_4d_nucleome_analysis|here]] to view slides and recordings from 4DN Phase 1 JAWG meetings. | ||
| - | [[https://wiki.4dnucleome.org/4dn:working_groups:jawg_sandbox|Data analysis sandbox, with links to analysis products]] | + | **If you want to share your slides, please sent them to Qiuyang (Brianne) email: [[yanzm@ucsd.edu|qiw024@ucsd.edu]]** |
| - | [[https://docs.google.com/document/d/1TNk17MMvh1iuMugyuU1QImmOYDwojt85f02XdJYw47M/edit|Joint Analysis Marker Paper Outline]] | + | ==== JA presentations in 2021: ==== |
| - | [[https://docs.google.com/spreadsheets/d/1HqXeIBTcOnb-dVgqgRzpQcdi9A9bf3jITx2K5vwvUTg/edit#gid=0|Joint Analysis paper plan tracking table]] | + | ^Date^Presenter^PI/Lab^Title^Slides^Recordings^Date accession^Other info^Other info| |
| + | |07/01/2021|Burak Alver|DCIC|4DN Data Portal Hi-C Pipeline Updates|~~TABLE_CELL_WRAP_START~~<WRAP> | ||
| + | [[https://drive.google.com/file/d/1opGkTC56oldUsvmpRSgmykrUud8nhS4J/view?usp=sharing|link]] | ||
| - | ===== Mission Statement ===== | + | </WRAP>~~TABLE_CELL_WRAP_STOP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~| |
4dn/phase2/working_groups/joint_analysis.1610135106.txt.gz · Last modified: 2025/04/22 16:21 (external edit)