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4dn:phase2:working_groups:joint_analysis
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4dn:phase2:working_groups:joint_analysis [2021/01/08 14:11] brianne [Plans and Documents] |
4dn:phase2:working_groups:joint_analysis [2025/04/22 16:21] (current) |
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| - | ====== Joint Analysis ====== | + | ====== Joint Analysis (JAWG) ====== |
| - | Point people/organizers: Feng Yue, Job Dekker, Bill Noble | + | **Point people/organizers:** //Feng Yue, Job Dekker, Bill Noble// |
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| + | <font inherit/inherit;;#c0392b;;inherit>**4DN Google Drive folder: **</font>[[https://drive.google.com/drive/folders/1-cfgD8blopeOKRRXJUhhgBbhIzPAmNkm?usp=sharing|https://drive.google.com/drive/folders/1-cfgD8blopeOKRRXJUhhgBbhIzPAmNkm?usp=sharing]] | ||
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| + | **<font inherit/inherit;;#c0392b;;inherit>4DN Calendar:</font> ** [[https://wiki.4dnucleome.org/4dn:calendar_4dn|https://wiki.4dnucleome.org/4dn:calendar_4dn]] ([[https://ics.teamup.com/feed/ksrqw1wb728dtrxdvg/8852681.ics|click here]] to add this specific WG calendar to your personal calendar) | ||
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| + | <font inherit/inherit;;#c0392b;;inherit>**Meeting attendee spreadsheet:**</font> [[https://docs.google.com/spreadsheets/d/1JmZ51QoiDfQhmZxrjf1tmD2KjPr7Yj7SfbWGxH4ZU08/edit?usp=sharing|https://docs.google.com/spreadsheets/d/1JmZ51QoiDfQhmZxrjf1tmD2KjPr7Yj7SfbWGxH4ZU08/edit?usp=sharing]] | ||
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| + | <font inherit/inherit;;#c0392b;;inherit>**Email list:**</font> <meeting-4dn-dj@4dnucleome.org> | ||
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| + | <font inherit/inherit;;#c0392b;;inherit>**Slack channel:**</font> #wg-joint-analysis | ||
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| + | **[[https://docs.google.com/spreadsheets/d/12tFfqxGBEtUqldazZoAxfSlkteyEp3MAE4K9RjaCE0M/edit?usp=sharing|Contact list for methods comparisons]]** | ||
| ===== Objective ===== | ===== Objective ===== | ||
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| <font 12pt/inherit;;inherit;;inherit><font inherit/Cambria;;inherit;;inherit><font inherit/Arial;;inherit;;inherit>Second, the working group aims to bring together representatives of all member groups of the 4D Nucleome Network to explore new collaborative projects. Once projects are defined, progress and coordination of the projects will be facilitated through bi-weekly meetings. The working group will closely interact with the 4DN data portal to enable data sharing between members and the 4D Nucleome Network in general.</font></font></font> | <font 12pt/inherit;;inherit;;inherit><font inherit/Cambria;;inherit;;inherit><font inherit/Arial;;inherit;;inherit>Second, the working group aims to bring together representatives of all member groups of the 4D Nucleome Network to explore new collaborative projects. Once projects are defined, progress and coordination of the projects will be facilitated through bi-weekly meetings. The working group will closely interact with the 4DN data portal to enable data sharing between members and the 4D Nucleome Network in general.</font></font></font> | ||
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| ===== Plans and Documents ===== | ===== Plans and Documents ===== | ||
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| [[https://docs.google.com/document/d/14GrmHI2UOcTRVGIex2WGwDT3waZYZxrhkDyj6_5gJWg/edit?usp=sharing|Agendas and minutes from phone calls]] | [[https://docs.google.com/document/d/14GrmHI2UOcTRVGIex2WGwDT3waZYZxrhkDyj6_5gJWg/edit?usp=sharing|Agendas and minutes from phone calls]] | ||
| - | [[https://data.4dnucleome.org/joint-analysis|Joint Analysis Data @ the 4DN Data Portal]] | + | **[[https://data.4dnucleome.org/help/submitter-guide/submitting_processed_results|Guide for submitting derived data files to 4DN data portal]]** |
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| + | [[https://data.4dnucleome.org/joint-analysis|Joint Analysis Datasets @ DCIC data portal]] | ||
| [[https://wiki.4dnucleome.org/4dn:phase2:working_groups:jawg_sandbox?s[]=sandbox|Data analysis sandbox, with links to analysis products]] | [[https://wiki.4dnucleome.org/4dn:phase2:working_groups:jawg_sandbox?s[]=sandbox|Data analysis sandbox, with links to analysis products]] | ||
| - | [[https://docs.google.com/document/d/1TNk17MMvh1iuMugyuU1QImmOYDwojt85f02XdJYw47M/edit|Joint Analysis Marker Paper Outline]] | + | [[https://docs.google.com/document/d/1b3hJL0Dh_bJqyzFoYsNgzv4j-gM0k5Lqss3qeF1k5NY/edit?usp=sharing|Joint Analysis Marker Paper Outline]] (link updated on 2/4/2021) |
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| + | [[https://docs.google.com/spreadsheets/d/1TCmDxJ5xCcOkeHrliMwesqgDZS9PeS-bgXVKTv26tWM/edit?usp=sharing|Joint Analysis paper plan tracking table]] | ||
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| + | ===== Joint Analysis Presentations ===== | ||
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| + | We encourage to share your slides. All the slides are only shared within the 4DN network. They are stored in 4DN Google Drive. You need to use your 4DN associated google account to view the slides. | ||
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| + | Please visit [[https://wiki.4dnucleome.org/4dn:phase1:working_groups:joint_4d_nucleome_analysis|here]] to view slides and recordings from 4DN Phase 1 JAWG meetings. | ||
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| + | **If you want to share your slides, please sent them to Qiuyang (Brianne) email: [[yanzm@ucsd.edu|qiw024@ucsd.edu]]** | ||
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| + | ==== JA presentations in 2021: ==== | ||
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| + | ^Date^Presenter^PI/Lab^Title^Slides^Recordings^Date accession^Other info^Other info| | ||
| + | |07/01/2021|Burak Alver|DCIC|4DN Data Portal Hi-C Pipeline Updates|~~TABLE_CELL_WRAP_START~~<WRAP> | ||
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| + | [[https://drive.google.com/file/d/1opGkTC56oldUsvmpRSgmykrUud8nhS4J/view?usp=sharing|link]] | ||
| - | [[https://docs.google.com/spreadsheets/d/1HqXeIBTcOnb-dVgqgRzpQcdi9A9bf3jITx2K5vwvUTg/edit#gid=0|Joint Analysis paper plan tracking table]] | + | </WRAP>~~TABLE_CELL_WRAP_STOP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~|~~CKG_TABLE_NBSP~~| |
4dn/phase2/working_groups/joint_analysis.1610143897.txt.gz · Last modified: 2025/04/22 16:21 (external edit)