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| - | <div><b style="background-color:transparent;font-size:xx-large;color:rgb(11,83,148)"><font face="georgia, serif">December 2018</font></b></div>\\ <div>\\ <ul><li><font size="4">2018 4DN Annual Meeting and 4DN-ASCB Satellite Meeting concluded successfully!</font></li></ul>\\ <ul><li><font size="4">New 4DN web portal launched! https://www.4dnucleome.org/</font></li></ul>\\ <div>\\ <ul><li><font size="4">4DN wiki is under maintenance.</font></li></ul>\\ <div>\\ <ul><li><font size="4">Job Opportunities: 6 job positions are still open. <span style="background-color:transparent">Please c<span style="background-color:transparent">heck the </span><a href="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/job-opportunities" style="background-color:transparent">4DN Job Advertisement Page</a> for detailed information.</span></font></li></ul>\\ </div>\\ <ul><li><font size="4">4DN Publications: Please add your preprints into <a href="http://connect.biorxiv.org/relate/content/66">bioRxiv 4DN channel</a> by contacting nils@hms.harvard.edu or leonid@mit.edu. Please also feel free to notify us of your new publications through email: OH@4dnucleome.org or twitter @4DNucleome. </font></li>\\ <ul><li><font size="4">Stats by Dec 31, 2018</font></li>\\ <ul><li><font size="3">Preprints (<a href="http://connect.biorxiv.org/relate/content/66">bioRxiv 4DN channel</a>):  135 in total</font></li>\\ <li><font size="3">Publications (<a href="https://www.ncbi.nlm.nih.gov/sites/myncbi/1vMpf2j6i3bke/collections/50779401/public/">Pubmed</a>):  170 in total.</font></li></ul>\\ <li><font size="4">New preprints in December (<a href="http://connect.biorxiv.org/relate/content/66" style="background-color:transparent">bioRxiv 4DN channel</a><span style="background-color:transparent">)</span><span style="background-color:transparent">:</span></font></li>\\ <ul><li><span style="background-color:transparent"><font size="3">Mayank NK Choudhary, Ryan Z Friedman, Julia T Wang, Hyo Sik Jang, Xiaoyu Zhuo, Ting Wang. Co-opted transposons help perpetuate conserved higher-order chromosomal structures. doi: </font></span><font size="3">https://doi.org/10.1101/485342</font></li></ul>\\ <li><font size="4">Recent new publications:</font></li>\\ <ul><li><font size="3">Haifeng Wang, Xiaoshu Xu, Cindy M. Nguyen, Yanxia Liu, Yuchen Gao, Xueqiu Lin, Timothy Daley, Nathan H. Kipniss, Marie La Russa, Lei S. Qi. CRISPR-Mediated Programmable 3D Genome Positioning and Nuclear Organization. Cell. 2018 Nov 15;175(5):1405-1417.e14. doi: 10.1016/j.cell.2018.09.013.</font></li></ul></ul></ul>\\ <ul><li><font size="4">Happy New Year 2019!</font></li></ul>\\ </div>\\ </div>\\ <div><b style="background-color:transparent;font-size:xx-large;color:rgb(11,83,148)"><font face="georgia, serif">November 2018</font></b></div>\\ <ul><li><font size="4">2018 4DN Annual Meeting and 4DN-ASCB Satellite Meeting are coming next week (Dec 4-7). See you in San Diego</font></li></ul>\\ <div></div>\\ <ul><li><font size="4">Upcoming workshops and conferences:</font></li>\\ <ul><li><font face="arial, sans-serif" style="background-color:transparent;font-size:10pt"><font color="#000000" style="font-size:19px"><a href="https://www.grc.org/genome-architecture-in-cell-fate-and-disease-conference/2019/" style="color:rgb(43,43,43)" target="_blank"><font size="4" style="color:rgb(43,43,43)">2019 Gordon Research Conference - </font><font size="3" style="color:rgb(43,43,43)"> </font></a></font></font><a href="https://www.grc.org/genome-architecture-in-cell-fate-and-disease-conference/2019/" style="background-color:transparent;font-size:19px;font-family:arial,sans-serif" target="_blank"><font color="#3d85c6" size="3"><b>The Eukaryotic Genome in 4 Dimensions: Integrative Approaches to Bridging Genotype and Phenotype</b></font></a></li>\\ <ul><li><font face="arial, sans-serif"><font size="3">When: August 4-9, 2019</font></font></li>\\ <li><font face="arial, sans-serif" size="3">Where: The Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong</font></li>\\ <li><font size="3"><font face="arial, sans-serif">Chairs: Dave Gilbert and Yijun Ruan, </font><font face="arial, sans-serif">Vic</font>e chairs: Victor Corces and Danny Leung</font></li></ul></ul></ul>\\ <ul><li><font size="4">Job Opportunities: 6 job positions are still open. <span style="background-color:transparent">Please c<span style="background-color:transparent">heck the </span><a href="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/job-opportunities" style="background-color:transparent">4DN Job Advertisement Page</a> for detailed information.</span></font></li></ul>\\ <ul><li><font size="4">4DN Publications: Please add your preprints into <a href="http://connect.biorxiv.org/relate/content/66">bioRxiv 4DN channel</a> by contacting nils@hms.harvard.edu or leonid@mit.edu. Please also feel free to notify us of your new publications through email: OH@4dnucleome.org or twitter @4DNucleome. </font></li>\\ <ul><li><font size="4">New preprints in November (<a href="http://connect.biorxiv.org/relate/content/66" style="background-color:transparent">bioRxiv 4DN channel</a><span style="background-color:transparent">)</span><span style="background-color:transparent">:</span></font></li>\\ <ul><li><font face="arial, sans-serif" size="3">Zhangming Yan, Norman Huang, Weixin Wu, Weizhogn Chen, Yiqun Jiang, Jingyao Chen, Xuerui Huang, Xingzhao Wen, Jie Xu, Qiushi Jin, Kang Zhang, Zhen Chen, Shu Chien, Sheng Zhong. Genome-wide co-localization of RNA-DNA interactions and fusion RNA pairs. doi: <a href="https://doi.org/10.1101/472019">https://doi.org/10.1101/47201</a></font></li></ul></ul></ul>\\ <ul></ul>\\ <ul></ul>\\ <div>\\ <ul></ul>\\ </div>\\ <div style="font-size:13.3333px"><b style="background-color:transparent;font-size:xx-large;color:rgb(11,83,148)"><font face="georgia, serif">October 2018</font></b><span style="background-color:transparent"> </span></div>\\ <div>\\ <ul><li><font size="4">2018 4DN Annual Meeting registration has been closed on November 1st.</font></li></ul>\\ <ul><li><font size="4">Upcoming workshops and conferences:</font></li>\\ <ul><li><font face="arial, sans-serif" style="background-color:transparent;font-size:10pt"><font color="#000000" style="font-size:19px"><a href="https://www.grc.org/genome-architecture-in-cell-fate-and-disease-conference/2019/" style="color:rgb(43,43,43)" target="_blank"><font size="4" style="color:rgb(43,43,43)">2019 Gordon Research Conference - </font><font size="3" style="color:rgb(43,43,43)"> </font></a></font></font><a href="https://www.grc.org/genome-architecture-in-cell-fate-and-disease-conference/2019/" style="background-color:transparent;font-size:19px;font-family:arial,sans-serif" target="_blank"><font color="#3d85c6" size="3"><b>The Eukaryotic Genome in 4 Dimensions: Integrative Approaches to Bridging Genotype and Phenotype</b></font></a></li>\\ <ul><li><font face="arial, sans-serif"><font size="3">When: August 4-9, 2019</font></font></li>\\ <li><span style="font-family:Roboto"><font size="3">Where: The Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong</font></span></li>\\ <li><font size="3"><span style="font-family:Roboto">Chairs: </span><span style="font-family:Roboto">Dave Gilbert and Yijun Ruan, </span>Vice chairs: Victor Corces and Danny Leung</font></li></ul></ul></ul>\\ <div>\\ <ul><li><font size="4">Associate member applications approved (<a href="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/associate-membership-applications" style="background-color:transparent" target="_blank">check here to know more</a><span style="background-color:transparent">)</span></font></li>\\ <ul><li><font size="3">Caterina Strambio</font></li>\\ <li><font size="3">Peter Yingxiao<span style="background-color:transparent;white-space:pre"> </span><span style="background-color:transparent">Wang</span></font></li></ul></ul>\\ </div>\\ <div>\\ <ul><li><font size="4">The Tier 2 cell line mESC G4 provided by University of Washington is available now. <a href="https://www.4dnucleome.org/cell-lines.html" target="_blank">Click here to learn more.</a></font></li>\\ <ul></ul></ul>\\ <ul><li><font size="4">Job Opportunities: 6 job positions are still open. <span style="background-color:transparent">Please c<span style="background-color:transparent">heck the </span><a href="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/job-opportunities" style="background-color:transparent">4DN Job Advertisement Page</a> for detailed information.</span></font></li></ul>\\ </div>\\ <ul><li><font size="4">4DN Publications: Please add your preprints into <a href="http://connect.biorxiv.org/relate/content/66">bioRxiv 4DN channel</a> by contacting nils@hms.harvard.edu or leonid@mit.edu. Please also feel free to notify us of your new publications through email: OH@4dnucleome.org or twitter @4DNucleome. </font></li>\\ <ul><li><font size="4">Stats by Oct 30, 2018</font></li>\\ <ul><li><font size="3">Preprints (<a href="http://connect.biorxiv.org/relate/content/66">bioRxiv 4DN channel</a>):  113 in total</font></li>\\ <li><font size="3">Publications (<a href="https://www.ncbi.nlm.nih.gov/sites/myncbi/1vMpf2j6i3bke/collections/50779401/public/">Pubmed</a>):  170 in total.</font></li></ul>\\ <li><font size="4">Recent new publications:</font></li>\\ <ul><li><font size="3">Jesse R. Dixon, Jie Xu, Vishnu Dileep, Ye Zhan, Fan Song, Victoria T. Le, Galip Gürkan Yardımcı, Abhijit Chakraborty, Darrin V. Bann, Yanli Wang, Royden Clark, Lijun Zhang, Hongbo Yang, Tingting Liu, Sriranga Iyyanki, Lin An, Christopher Pool, Takayo Sasaki, Juan Carlos Rivera-Mulia, Hakan Ozadam, Bryan R. Lajoie, Rajinder Kaul, Michael Buckley, Kristen Lee, Morgan Diegel, Dubravka Pezic, Christina Ernst, Suzana Hadjur, Duncan T. Odom, John A. Stamatoyannopoulos, James R. Broach, Ross C. Hardison, Ferhat Ay, William Stafford Noble, Job Dekker, David M. Gilbert & Feng Yue. Integrative detection and analysis of structural variation in cancer genomes. <i>Nature Genetics</i>. volume 50, pages1388–1398 (2018). doi: <a href="https://doi.org/10.1038/s41588-018-0195-8">https://doi.org/10.1038/s41588-018-0195-8</a></font></li></ul></ul></ul>\\ <ul><li><font size="4">Scientific Webinar Series this Month: October 26, 2018</font></li></ul>\\ <div>\\ <ul>\\ <ul><li>\\ <p><b style="font-size:medium;font-family:arial,sans-serif">Presenter: Martin Falk </b><span style="background-color:transparent"><font face="arial, sans, sans-serif"><font size="3"><span style="white-space:pre-wrap">(Massachusetts Institute of Technology</span></font></font></span><span style="background-color:transparent;font-size:10pt"><font face="arial, sans, sans-serif"><font size="3"><span style="white-space:pre-wrap">) - "</span></font></font></span><span style="background-color:transparent;white-space:pre-wrap"><font face="arial, sans, sans-serif" size="3">Heterochromatin drives organization of conventional and inverted nuclei</font></span><span style="background-color:transparent;font-size:10pt;white-space:pre-wrap"><font face="arial, sans, sans-serif" size="3">"</font></span><span style="background-color:transparent;font-size:medium;white-space:pre-wrap"><font face="arial, sans, sans-serif"><b> </b></font></span><font style="background-color:transparent;font-size:10pt;font-family:arial,sans-serif"><span style="white-space:pre-wrap">[</span></font><span style="background-color:transparent;font-size:10pt;font-family:arial,sans-serif;white-space:pre-wrap"><a href="https://docs.google.com/a/4dnucleome.org/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDpmZGYxMmRjZGRlMjgxYjU" target="_blank">Link to presenter slides</a></span><font style="background-color:transparent;font-size:10pt;font-family:arial,sans-serif;white-space:pre-wrap">]</font></p>\\ </li>\\ <li>\\ <p><b style="background-color:transparent;font-size:medium;font-family:arial,sans-serif">Presenter: Andrew Barentine </b><font face="arial, sans-serif" size="3" style="background-color:transparent">(Yale University) </font><span style="background-color:transparent;font-size:medium;font-family:arial,sans-serif">- </span><span style="background-color:transparent;font-size:10pt"><font face="arial, sans-serif" size="3">“</font></span><span style="background-color:transparent;font-size:10pt"><font face="arial, sans-serif" size="3">3D Nanoscopy of 10,000 Nuclei a Day</font></span><span style="background-color:transparent;font-size:10pt"><font face="arial, sans-serif" size="3">"</font></span><span style="background-color:transparent;font-size:medium;font-family:arial,sans-serif"> </span><span style="background-color:transparent;font-size:medium;white-space:pre-wrap"><font face="arial, sans, sans-serif"><b> </b></font></span><font style="background-color:transparent;font-size:10pt;font-family:arial,sans-serif"><span style="white-space:pre-wrap">[</span></font><span style="background-color:transparent;font-size:10pt;font-family:arial,sans-serif;white-space:pre-wrap"><a href="https://docs.google.com/a/4dnucleome.org/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDo3NmVmYWRmODgwYmE5MjJi" target="_blank">Link to presenter slides</a></span><font style="background-color:transparent;font-size:10pt;font-family:arial,sans-serif;white-space:pre-wrap">]</font></p>\\ </li></ul></ul>\\ </div>\\ </div>\\ <div style="font-size:13.3333px">\\ <ul></ul>\\ </div>\\ </div>\\ <div style="font-size:13.3333px"><b style="background-color:transparent;font-size:xx-large;color:rgb(11,83,148)"><font face="georgia, serif">September 2018</font></b><span style="background-color:transparent"> </span></div>\\ <div>\\ <ul><li style="font-size:13.3333px"><font color="#ff0000" size="4"><b>November 1: Deadline for registration, abstract submission and hotel booking for the 2018 4DN Annual Meeting. </b></font></li>\\ <ul><li><font size="4"><b style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:12.8px"><font size="4" style="color:rgb(17,85,204)"><a href="http://4dn-annual-meetings.fluidreview.com/" style="color:rgb(17,85,204)">CLICK HERE TO REGISTER</a></font></b></font></li>\\ <li><b style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:12.8px"><font size="4" style="color:rgb(17,85,204)"><a href="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/meetings-and-committees/2018-annual-meeting" style="color:rgb(17,85,204)">Click here to go the annual meeting wiki page for more information</a></font></b></li></ul></ul>\\ <ul><li><font size="4">Job Opportunities: 6 job positions are still open. <span style="background-color:transparent">Please c<span style="background-color:transparent">heck the </span><a href="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/job-opportunities" style="background-color:transparent">4DN Job Advertisement Page</a> for detailed information.</span></font></li></ul>\\ </div>\\ <ul><li><font size="4">4DN Publications: Please add your preprints into <a href="http://connect.biorxiv.org/relate/content/66">bioRxiv 4DN channel</a> by contacting nils@hms.harvard.edu or leonid@mit.edu. Please also feel free to notify us of your new publications through email: OH@4dnucleome.org or twitter @4DNucleome. </font></li>\\ <ul><li><font size="4">New preprints in September (<a href="http://connect.biorxiv.org/relate/content/66" style="font-size:medium">bioRxiv 4DN channel</a><span style="font-size:medium">)</span>:</font></li>\\ <ul><li><font size="3">Sadowski, M., Kraft, A., Szalaj, P., Wlasnowolski, M., Tang, Z., Ruan, Y., Plewczynski, D. Spatial Chromatin Architecture Alteration by Structural Variations in Human Genomes at Population Scale. doi<span style="background-color:transparent">: <a href="https://doi.org/10.1101/266981">https://doi.org/10.1101/266981</a> — Posted: 2018-09-14</span></font></li></ul>\\ <li><font size="4">Recent new publications:</font></li>\\ <ul><li><font size="3">James H. Sun, Linda Zhou, Daniel J. Emerson, Sai A. Phyo, Katelyn R. Titus, Wanfeng Gong, Thomas G. Gilgenast, Jonathan A. Beagan, Beverly L. Davidson, Flora Tasson, Jennifer E. Phillips-Cremins. Disease-Associated Short Tandem Repeats Co-localize with Chromatin Domain Boundaries. <i>Cell</i>. 2018 Sep 20;175(1):224-238.e15. doi:  <a href="https://doi.org/10.1016/j.cell.2018.08.005">https://doi.org/10.1016/j.cell.2018.08.005</a>. </font></li>\\ <li><font size="3">Marc A. Marti-Renom, Genevieve Almouzni, Wendy A. Bickmore, Kerstin Bystricky, Giacomo Cavalli, Peter Fraser, Susan M. Gasser, Luca Giorgetti, Edith Heard, Mario Nicodemi, Marcelo Nollmann, Modesto Orozco, Ana Pombo & Maria-Elena Torres-Padilla. Challenges and guidelines toward 4D nucleome data and model standards. <i>Nature </i><i>Genetics. </i>volume 50, pages1352–1358 (2018). <a href="https://doi.org/10.1038/s41588-018-0236-3">https://doi.org/10.1038/s41588-018-0236-3</a></font></li></ul></ul></ul>\\ <ul><li><font size="4">Scientific Webinar Series this Month: September 28, 2018</font></li></ul>\\ <div>\\ <ul>\\ <ul><li><b style="background-color:transparent;font-size:medium;font-family:arial,sans-serif">Presenter: </b><font size="3"><b>Adrien Senecal</b></font><b style="font-size:medium"> </b><font size="3">(Albert Einstein College of Medicine) - The p53 transcription factor regulates transcriptional burst frequency and multiple steps of formation and disruption of chromatin on the p21 gene locus </font><font size="2"><a href="https://www.google.com/url?q=https%3A%2F%2Fwww.dropbox.com%2Fs%2Fuj7ojiw6nr0hw57%2F2018-09-27%25204DN.pptx%3Fdl%3D0&sa=D&sntz=1&usg=AFQjCNHf6o9jxMapXCvp6IRSSRlTr81y_Q" target="_blank">[Link to presenter slides]</a></font></li></ul></ul>\\ <ul>\\ <ul><li><b style="background-color:transparent;font-size:medium;font-family:arial,sans-serif">Presenter: </b><font face="arial, sans-serif" size="3"><b>Matthew Denholtz</b></font><b style="font-family:arial,sans-serif;font-size:medium"> </b><font face="arial, sans-serif" size="3" style="font-size:medium">(University of California, San Diego) </font><span style="font-size:medium;font-family:arial,sans-serif">- </span><font size="3"><font face="arial, sans-serif">Neutrophil genome dynamics in development and pathogen encounter</font> </font><font size="2"><a href="https://docs.google.com/a/4dnucleome.org/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDpkMzk4NmI3MjA3OWEyOWQ" target="_blank">[Link to presenter slides]</a></font></li></ul></ul>\\ </div>\\ <div>\\ <ul></ul>\\ </div>\\ </div>\\ <div style="font-size:13.3333px"><b style="background-color:transparent;font-size:xx-large;color:rgb(11,83,148)"><font face="georgia, serif">August 2018</font></b><span style="background-color:transparent"> </span></div>\\ <div>\\ <ul><li style="font-size:13.3333px"><font size="4">Register now for the 2018 4DN Annual Meeting (Dec 5-7, 2018). </font></li>\\ <ul style="font-size:13.3333px"><li><font size="4"><b style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:12.8px"><font size="4" style="color:rgb(17,85,204)"><a href="http://4dn-annual-meetings.fluidreview.com/" style="color:rgb(17,85,204)">CLICK HERE TO REGISTER</a></font></b></font></li>\\ <li><b style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:12.8px"><font size="4" style="color:rgb(17,85,204)"><a href="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/meetings-and-committees/2018-annual-meeting" style="color:rgb(17,85,204)">Click here to go the annual meeting wiki page for more information</a></font></b></li></ul></ul>\\ <ul><li><font size="4">IHEC annual meeting registration (deadline Oct 15) and abstract submission (deadline Sept 26). You can find more information here: <a href="http://ias.ust.hk/events/2018ihec/index.html">http://ias.ust.hk/events/2018ihec/index.html</a></font></li></ul>\\ <ul><li><font size="4">Job Opportunities: 8 job positions are still open. <span style="background-color:transparent">Please c<span style="background-color:transparent">heck the </span><a href="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/job-opportunities" style="background-color:transparent">4DN Job Advertisement Page</a> for detailed information. </span></font></li></ul>\\ <ul><li><font size="4">Associate member applications approved (<a href="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/associate-membership-applications" target="_blank">check here to know more</a>)</font></li>\\ <ul><li><font size="4">Maxwell Libbrecht and Michael Hoffman</font></li>\\ <li><font size="4">Kai Tan</font></li></ul></ul>\\ <ul><li><font size="4">4DN Publications: Please add your preprints into <a href="http://connect.biorxiv.org/relate/content/66">bioRxiv 4DN channel</a> by contacting nils@hms.harvard.edu or leonid@mit.edu. Please also feel free to notify us of your new publications through email: OH@4dnucleome.org or twitter @4DNucleome. </font></li>\\ <ul><li><font size="4">New preprints in August (<a href="http://connect.biorxiv.org/relate/content/66" style="font-size:medium">bioRxiv 4DN channel</a><span style="font-size:medium">)</span>:</font></li>\\ <ul><li><font size="3">Kim, S., Dunham, M., Shendure, J. A combination of transcription factors mediates inducible interchromosomal pairing. doi: <a href="https://doi.org/10.1101/385047">https://doi.org/10.1101/385047</a>. Posted: 2018-08-05</font></li></ul></ul></ul>\\ <ul>\\ <ul>\\ <ul><li><font size="3">Rieger, B., Stallinga, S., Hulleman, C. N., Thorsen, R. O., Grunwald, D., Hammer, M. Photon count estimation in single-molecule localization microscopy. doi: <a href="https://doi.org/10.1101/396424">https://doi.org/10.1101/396424</a>. Posted: 2018-08-20</font></li></ul>\\ <li><font size="4">Recent new publications:</font></li>\\ <ul><li><font size="3">Peter Kerpedjiev, Nezar Abdennur, Fritz Lekschas, Chuck McCallum, Kasper Dinkla, Hendrik Strobelt, Jacob M. Luber, Scott B. Ouellette, Alaleh Azhir, Nikhil Kumar, Jeewon Hwang, Soohyun Lee, Burak H. Alver, Hanspeter Pfister, Leonid A. Mirny, Peter J. Park and Nils Gehlenborg. HiGlass: web-based visual exploration and analysis of genome interaction maps. <i>Genome Biology.</i> 2018, Aug 24;19(1):125. doi: <a href="https://doi.org/10.1186/s13059-018-1486-1">https://doi.org/10.1186/s13059-018-1486-1</a>.</font></li></ul></ul></ul>\\ <ul>\\ <ul>\\ <ul><li><font size="3">Yu Chen, Yang Zhang, Yuchuan Wang, Liguo Zhang, Eva K. Brinkman, Stephen A. Adam, Robert Goldman, Bas van Steensel, Jian Ma, Andrew S. Belmont. Mapping 3D genome organization relative to nuclear compartments using TSA-Seq as a cytological ruler. <i>Journal of Cell Biology</i>. August 28, 2018. DOI: <a href="https://doi.org/10.1083/jcb.201807108">https://doi.org/10.1083/jcb.201807108</a></font></li></ul></ul></ul>\\ <ul>\\ <ul>\\ <ul><li><font size="3">Won-Ki Cho, Jan-Hendrik Spille, Micca Hecht, Choongman Lee, Charles Li, Valentin Grube, Ibrahim I. Cisse. Mediator and RNA polymerase II clusters associate in transcription-dependent condensates. <i>Science. </i>27 Jul 2018: Vol. 361, Issue 6400, pp. 412-415. doi: <a href="https://doi.org/10.1126/science.aar4199">https://doi.org/10.1126/science.aar4199</a></font></li></ul></ul></ul>\\ <ul>\\ <ul>\\ <ul><li><font size="3">Shasha Chong, Claire Dugast-Darzacq, Zhe Liu, Peng Dong, Gina M. Dailey, Claudia Cattoglio, Alec Heckert, Sambashiva Banala, Luke Lavis, Xavier Darzacq, Robert Tjian. Imaging dynamic and selective low-complexity domain interactions that control gene transcription. <i>Science </i>27 Jul 2018:Vol. 361, Issue 6400, eaar2555. doi: <a href="https://doi.org/10.1126/science.aar2555">https://doi.org/10.1126/science.aar2555</a></font></li></ul></ul></ul>\\ <ul>\\ <ul>\\ <ul><li><font size="3">Hongtao Chen, Michal Levo, Lev Barinov, Miki Fujioka, James B. Jaynes & Thomas Gregor. Dynamic<span style="background-color:transparent"> interplay between </span>enhancer–promoter<span style="background-color:transparent"> topology and gene activity. <i>Nature </i></span><i>Genetics</i>. 2018 Volume<span style="background-color:transparent"> 50, pages1296–1303.  doi: <a href="https://doi.org/10.1038/s41588-018-0175-z">https://doi.org/10.1038/s41588-018-0175-z</a></span></font></li></ul></ul></ul>\\ <ul>\\ <ul>\\ <ul><li><font size="3">Sofia A. Quinodoz, Noah Ollikainen, Barbara Tabak, Ali Palla, Jan Marten Schmidt, Elizabeth Detmar, Mason M. Lai, Alexander A. Shishkin, Prashant Bhat, Yodai Takei, Vickie Trinh, Erik Aznauryan, Pamela Russell, Christine Cheng, Marko Jovanovic, Amy Chow, Long Cai, Patrick McDonel, Manuel Garber, Mitchell Guttman. Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus. <i>Cell</i>. 2018, Volume 174, Issue 3, 26, Pages 744-757.e24. doi: <a href="https://doi.org/10.1016/j.cell.2018.05.024">https://doi.org/10.1016/j.cell.2018.05.024<br>\\ </a></font></li></ul></ul></ul>\\ <ul><li><font size="4">Scientific Webinar Series this Month: August 24, 2018</font></li></ul>\\ <div>\\ <ul>\\ <ul><li><b style="background-color:transparent;font-size:medium;font-family:arial,sans-serif">Presenter: </b><b style="font-size:medium">Roel Neijts </b><font size="3">(Institute Pasteur) - Exploring the TAD: specific enhancer-promoter interactions within regulatory domains </font><a href="https://docs.google.com/a/4dnucleome.org/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDoxMWEwYTk1OGI5ZTMwMjE" target="_blank"><font size="2">[Link to presenter slides]</font></a></li></ul></ul>\\ <ul>\\ <ul><li><b style="background-color:transparent;font-size:medium;font-family:arial,sans-serif">Presenter: </b><b style="font-size:medium;font-family:arial,sans-serif">Arturas Petronis </b><font face="arial, sans-serif" size="3" style="font-size:medium">(Center for Addiction and Mental Health) </font><span style="font-size:medium;font-family:arial,sans-serif">- </span><span style="font-size:13.3333px;background-color:transparent"><font face="arial, sans-serif" size="3">Spatiotemporal dynamics of chromatin: the circadian perspective</font></span><font size="3"> </font><a href="https://docs.google.com/a/4dnucleome.org/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDo0MWQ3NGRiYThhYTM0Mjg5" target="_blank"><font size="2">[Link to presenter slides]</font></a></li></ul>\\ <li><br>\\ </li></ul>\\ </div>\\ <ul></ul>\\ <br>\\ </div>\\ </div>\\ <div style="font-size:13.3333px"><b style="background-color:transparent;font-size:xx-large;color:rgb(11,83,148)"><font face="georgia, serif">July 2018</font></b><span style="background-color:transparent"> </span></div>\\ <div>\\ <ul><li style="font-size:13.3333px"><font size="4">Register now for the 2018 4DN Annual Meeting (Dec 5-7, 2018). </font></li>\\ <ul style="font-size:13.3333px"><li><font size="4"><b style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:12.8px"><font size="4" style="color:rgb(17,85,204)"><a href="http://4dn-annual-meetings.fluidreview.com/" style="color:rgb(17,85,204)">CLICK HERE TO REGISTER</a></font></b></font></li>\\ <li><b style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:12.8px"><font size="4" style="color:rgb(17,85,204)"><a href="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/meetings-and-committees/2018-annual-meeting" style="color:rgb(17,85,204)">Click here to go the annual meeting wiki page for more information</a></font></b></li></ul></ul>\\ <ul><li><font size="4">IHEC annual meeting is now open for registration. You can find more information here: <a href="http://ias.ust.hk/events/2018ihec/index.html">http://ias.ust.hk/events/2018ihec/index.html</a></font></li></ul>\\ <ul><li><font face="arial, sans-serif" size="4"><font color="#222222">The NIH Common Fund 4D Nucleome program has released an </font><a href="https://grants.nih.gov/grants/guide/notice-files/NOT-RM-18-017.html" style="color:rgb(17,85,204)">RFI</a><font color="#ff0000"> </font>to solicit feedback from the national and international community on the remaining challenges towards a comprehensive analysis of the mammalian 4D Nucleome. Suggestions from all are welcome. Written responses must be submitted by <span style="border-bottom:1px dashed rgb(204,204,204)"><span>August 6, 2018</span></span>to <span><a href="mailto:4DNucleome@mail.nih.gov">4DNucleome@mail.nih.gov</a></span>. </font></li></ul>\\ <ul><li><font size="4">Textbook seeks inputs and contributors. OH drafted a textbook titled <a href="https://www.google.com/url?q=https%3A%2F%2Fzhonglab.gitbook.io%2F3dgenome%2F&sa=D&sntz=1&usg=AFQjCNHuVXB7qg8956XopTE8_QjxQL4coA">3D Genome: from technology to visualization</a>, using an</font> <span style="font-size:large;background-color:transparent">E-book format, with college students as the target audience. Please give comments and suggestions by emailing: </span><a href="mailto:nucleomebook@4dnucleome.org" style="font-size:large;background-color:transparent">nucleomebook@4dnucleome.org</a><span style="font-size:large;background-color:transparent">. Content contributors are welcome!<br>\\ <br>\\ </span></li>\\ <li><font size="4">Job Opportunities: 8 job positions are open. <span style="background-color:transparent">Please c<span style="background-color:transparent">heck the </span><a href="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/job-opportunities" style="background-color:transparent">4DN Job Advertisement Page</a> for detailed information. </span></font></li></ul>\\ <ul><li><font size="4">4DN Publications: Please add your preprints into <a href="http://connect.biorxiv.org/relate/content/66">bioRxiv 4DN channel</a> by contacting nils@hms.harvard.edu or leonid@mit.edu. Please also feel free to notify us of your new publications through email: OH@4dnucleome.org or twitter @4DNucleome. </font></li>\\ <ul><li><font size="4">New preprints in July:</font></li>\\ <ul><li><font size="3"><font face="GillSansRegular, Gill Sans MT, Gill Sans, Helvetica, Arial, sans-serif">Mayuri Rege, Ji Hun Kim, Jacqueline Valeri, Margaret Dunagin, Aryeh Metzger, Wanfeng Gong, Jonathan Beagan, Arjun Raj,  Jennifer E Phillips-Cremins.</font>LADL: Light-activated dynamic looping for endogenous gene expression control. doi: https://doi.org/10.1101/349340. Posted June 18, 2018.</font></li></ul>\\ <li><font size="4">New publications in July:</font></li>\\ <ul><li><font face="arial, sans-serif" size="3"> Xiaoyi Cao, Zhangming Yan, Qiuyang Wu, Alvin Zheng and Sheng Zhong. GIVE: portable genome browsers for personal websites. <i>Genome Biology, </i>2018, 19:92. doi: <a href="https://doi.org/10.1186/s13059-018-1465-6">https://doi.org/10.1186/s13059-018-1465-6 </a></font></li></ul></ul></ul>\\ <ul><li><font size="4"><font color="#0000ff"><b><a href="https://www.youtube.com/playlist?list=PLiJ0I11RAJ2rPJHImnuFiQJg7P1qsBhop">4DN Youtube Channel</a> </b></font></font></li>\\ <ul><li><font size="4">3 new videos released on the <a href="https://www.youtube.com/playlist?list=PLiJ0I11RAJ2rPJHImnuFiQJg7P1qsBhop" style="color:rgb(22,122,198);margin:0px;padding:0px;border:0px;background-image:initial;background-position:initial;background-repeat:initial;white-space:nowrap"><font face="arial, sans-serif">4D Nucleome Scientific Webinar Series</font></a> playlist.</font></li>\\ <ul><li><font size="3"><font color="#336699"><a href="https://youtu.be/PC5v5axTSFs">Elucidating the role of nascent RNA at enhancers</a></font></font></li>\\ <li><font size="3"><a href="https://youtu.be/Q5nUrT_3xnk">Interacting differentially methylated regions (iDMRs) to infer chromosome looping</a></font></li>\\ <li><font size="3"><a href="https://youtu.be/qjTZWtLJ7Cg">Trac-looping: a novel technique for analysis of chromatin accessibility and interaction</a></font></li></ul></ul></ul>\\ <ul><li><font size="4">Scientific Webinar Series this Month: July 27, 2018</font></li></ul>\\ <ul>\\ <ul><li><b style="background-color:transparent;font-size:medium;font-family:arial,sans-serif">Presenter: Tom Pastinen </b><span style="background-color:transparent;font-size:10pt"><font face="arial, sans, sans-serif"><font size="3"><span style="white-space:pre-wrap">(McGill University) - </span></font></font></span><span style="background-color:transparent;font-size:10pt;white-space:pre-wrap"><font face="arial, sans, sans-serif" size="3">Interacting differentially methylated regions (iDMRs) to infer chromosome looping</font></span></li></ul></ul>\\ </div>\\ </div>\\ <blockquote style="margin:0 0 0 40px;border:none;padding:0px">\\ <blockquote style="margin:0 0 0 40px;border:none;padding:0px">\\ <blockquote style="margin:0 0 0 40px;border:none;padding:0px">\\ <div><font style="background-color:transparent;font-size:10pt;font-family:arial,sans-serif"><span style="white-space:pre-wrap">[</span></font><span style="background-color:transparent;font-size:10pt;font-family:arial,sans-serif;white-space:pre-wrap"><a href="https://docs.google.com/a/4dnucleome.org/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDozODg2YjA1M2E0MjI1YTcx">Link to presenter slides</a></span><font style="background-color:transparent;font-size:10pt;font-family:arial,sans-serif;white-space:pre-wrap">]</font><img src="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/newsletter/small_youtube_icon.png?attachauth=ANoY7cq-eNZq7SE8h4BXMOU8NJmcQ7cksyMGtpmyzYKcv6fldezFlwwc9BtzXFA5hqpmn-FhVApuVIWm8IoW8swhmCTV47obTBFXOUEKqjOPK5dBznlUGTcqd1B34zbtpBbZDR3HmnDCcOEQz-Kx1uHrJi6l9bqPTKE94BWGOSJHwJBniA7Q7xxsS1XpizDA8dtkQYVPxqnj2NQMo3hA291__aMT8Celf-cs_HolUnUxEHEsfhzaTPMJFOuVosG5A10O38sWqgpU&attredirects=1" style="background-color:transparent;font-size:10pt"> <a href="https://youtu.be/Q5nUrT_3xnk" style="background-color:transparent">https://youtu.be/Q5nUrT_3xnk</a></div>\\ </blockquote>\\ </blockquote>\\ </blockquote>\\ <div>\\ <div>\\ <ul>\\ <ul><li><b style="background-color:transparent;font-size:medium;font-family:arial,sans-serif">Presenter: Keji Zhao </b><font face="arial, sans-serif" size="3" style="background-color:transparent">(NHLBI) </font><span style="background-color:transparent;font-size:medium;font-family:arial,sans-serif">- </span><span style="background-color:transparent;font-size:10pt"><font face="arial, sans-serif" size="3">Trac-looping: a novel technique for analysis of chromatin accessibility and interaction</font></span></li></ul></ul>\\ </div>\\ </div>\\ <blockquote style="margin:0 0 0 40px;border:none;padding:0px">\\ <blockquote style="margin:0 0 0 40px;border:none;padding:0px">\\ <blockquote style="margin:0 0 0 40px;border:none;padding:0px">\\ <div><font style="background-color:transparent;font-size:10pt;font-family:arial,sans-serif"><span style="white-space:pre-wrap">[</span></font><span style="background-color:transparent;font-size:10pt;font-family:arial,sans-serif;white-space:pre-wrap"><a href="https://docs.google.com/a/4dnucleome.org/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDo3ZmIwM2ZlODlhODIxNg">Link to presenter slides</a></span><font style="background-color:transparent;font-size:10pt;font-family:arial,sans-serif;white-space:pre-wrap">]</font><img src="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/newsletter/small_youtube_icon.png?attachauth=ANoY7cq-eNZq7SE8h4BXMOU8NJmcQ7cksyMGtpmyzYKcv6fldezFlwwc9BtzXFA5hqpmn-FhVApuVIWm8IoW8swhmCTV47obTBFXOUEKqjOPK5dBznlUGTcqd1B34zbtpBbZDR3HmnDCcOEQz-Kx1uHrJi6l9bqPTKE94BWGOSJHwJBniA7Q7xxsS1XpizDA8dtkQYVPxqnj2NQMo3hA291__aMT8Celf-cs_HolUnUxEHEsfhzaTPMJFOuVosG5A10O38sWqgpU&attredirects=1" style="background-color:transparent;font-size:10pt"> <a href="https://youtu.be/qjTZWtLJ7Cg" style="background-color:transparent">https://youtu.be/qjTZWtLJ7Cg</a></div>\\ </blockquote>\\ </blockquote>\\ </blockquote>\\ <div>\\ <div style="font-size:13.3333px"><span style="background-color:transparent"><br>\\ </span></div>\\ <div style="font-size:13.3333px"><b style="background-color:transparent;font-size:xx-large;color:rgb(11,83,148)"><font face="georgia, serif">June 2018</font></b><span style="background-color:transparent"> </span></div>\\ <div>\\ <ul><li style="font-size:13.3333px"><font size="4">Registration for the 2018 4DN Annual Meeting (Dec 5-7, 2018) is open now. </font></li>\\ <ul style="font-size:13.3333px"><li><font size="4"><b style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:12.8px"><font size="4" style="color:rgb(17,85,204)"><a href="http://4dn-annual-meetings.fluidreview.com/" style="color:rgb(17,85,204)">CLICK HERE TO REGISTER</a></font></b></font></li>\\ <li><b style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:12.8px"><font size="4" style="color:rgb(17,85,204)"><a href="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/meetings-and-committees/2018-annual-meeting" style="color:rgb(17,85,204)">Click here to go the annual meeting wiki page for more information</a></font></b></li></ul></ul>\\ <ul><li><font size="4">Cell line WTC-11 has been moved from a Tier 2 to a Tier 1 cell line, as approved by the Cells WG. We now have 5 cell lines on Tier 1. Check the <a href="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/working-groups-list/cell-lines-and-samples-wg">cell line wiki page </a>for more details. </font></li></ul>\\ <ul><li><font size="4">Upcoming workshops and conferences:</font></li>\\ <ul><li><font size="4"><a href="https://www.grc.org/centromere-biology-conference/2018/">Centromere Biology - 2018 Gordon Research Conference</a></font></li>\\ <ul><li><font size="4">When: July 29 - August 3, 2018</font></li>\\ <li><font size="4">Where: Mount Snow Resort, West Dover, Vermont, USA</font></li>\\ <li><font size="4">Organizers: Aaron Straight and Sylvia Erhardt</font></li></ul></ul></ul>\\ <ul><li><font size="4">Job Opportunities: <span style="background-color:transparent">Please c<span style="background-color:transparent">heck the </span><a href="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/job-opportunities" style="background-color:transparent">4DN Job Advertisement Page</a> for detailed information. </span></font></li>\\ <ul><li><font size="4">2 new job opportunities: </font></li>\\ <ul><li><font size="3"><span style="background-color:transparent">Bioinformatics Scientist -- </span>Harvard Medical School - DCIC (<a href="http://dcic.4dnucleome.org/positions/scientist-02/">Link to details</a>)</font></li>\\ <li><font size="3">Senior Bioinformatics Scientist -- </font> <span style="font-size:medium">Harvard Medical School - DCIC (</span><a href="http://dcic.4dnucleome.org/positions/scientist-03" style="font-size:medium">Link to details</a><span style="font-size:medium">)</span></li></ul>\\ <li><font size="4">6 previous job opportunities are still open. </font></li></ul></ul>\\ <ul><li><font size="4">4DN Publications: Please add your preprints into <a href="http://connect.biorxiv.org/relate/content/66">bioRxiv 4DN channel</a>. Please also feel free to notify us of your new publications through email: OH@4dnucleome.org or twitter @4DNucleome. </font></li>\\ <ul><li><font size="4">New preprints in June:</font></li>\\ <ul><li><font face="arial, sans-serif" size="3">Kim, J., Han, K. Y., Khanna, N., Ha, T., Belmont, A. S. Nuclear speckle fusion via long-range directional motion regulates the number and size of speckles. doi: <a href="http://biorxiv.org/cgi/content/short/347955" style="margin:0px;padding:0px;border:0px;outline:0px;vertical-align:baseline;font-style:inherit;font-variant:inherit;font-stretch:inherit;line-height:inherit;color:rgb(128,128,128)">10.1101/34795</a>.<span style="font-style:inherit;font-variant:inherit;font-weight:inherit;color:rgb(51,51,51);background-color:transparent;margin:0px;padding:0px 0px 0px 6px;border:0px;outline:0px;vertical-align:baseline;font-stretch:inherit;line-height:inherit"> Posted: 2018-06-15</span></font></li></ul>\\ <li><font size="4">New publications in June: </font></li>\\ <ul><li><font size="3">Ipek Tasan  Gabriela Sustackova  Liguo Zhang  Jiah Kim  Mayandi Sivaguru Mohammad HamediRad  Yuchuan Wang  Justin Genova  Jian Ma  Andrew S Belmont, Huimin Zhao. CRISPR/Cas9-mediated knock-in of an optimized TetO repeat for live cell imaging of endogenous loci. <i>Nucleic Acids Research</i>, Published: 15 June 2018. doi: <a href="https://doi.org/10.1093/nar/gky501">https://doi.org/10.1093/nar/gky501</a></font></li>\\ <li><font size="3">Ji Hun Kim, Katelyn R.Titus, Wanfeng Gong, Jonathan A. Beagan, Zhendong Cao, Jennifer E.Phillips-Cremins. 5C-ID: Increased resolution Chromosome-Conformation-Capture-Carbon-Copy with in situ 3C and double alternating primer design. <i>Methods</i>, Volume 142, 1 June 2018, Pages 39-46<span style="background-color:transparent">. doi: </span><a href="https://doi.org/10.1016/j.ymeth.2018.05.005">https://doi.org/10.1016/j.ymeth.2018.05.005</a></font></li>\\ <li><font size="3">Yang Yang, Quanquan Gu, Yang Zhang, Takayo Sasaki, Julianna Crivello, Rachel J. O'Neill, David M. Gilbert, Jian Ma. Continuous-Trait Probabilistic Model for Comparing Multi-species Functional Genomic Data. <i>Cell Systems</i>. Published Online: June 20, 2018. doi: <a href="https://doi.org/10.1016/j.cels.2018.05.022" style="color:rgb(28,150,211);font-family:arial,sans-serif">https://doi.org/10.1016/j.cels.2018.05.022</a></font></li>\\ <li><font face="arial, sans-serif" size="3" style="background-color:transparent"><span style="white-space:nowrap">Weizhong Chen, Zhangming Yan, Simin Li, Norman Huang, Xuerui Huang, Jin Zhang, Sheng Zhong. RNAs as Proximity-Labeling Media for Identifying Nuclear Speckle Positions Relative to</span></font><font size="3" style="background-color:transparent"> the Genome. <i>iScience</i><span style="white-space:nowrap;font-family:arial,sans-serif;background-color:transparent">. Volume 4, p204–215, 29 June 2018. doi: </span></font><a href="https://doi.org/10.1016/j.isci.2018.06.005" style="background-color:transparent;font-family:arial,sans-serif;font-size:medium">https://doi.org/10.1016/j.isci.2018.06.005</a></li>\\ <li><font face="arial, sans-serif" size="3">Ruochi Zhang  Yuchuan Wang  Yang Yang  Yang Zhang  Jian Ma. Predicting CTCF-mediated chromatin loops using CTCF-MP. <em style="margin:0px;padding:0px;border:0px;font-stretch:inherit;line-height:inherit;vertical-align:baseline;color:rgb(42,42,42)">Bioinformatics</em><span style="color:rgb(42,42,42)">, Volume 34, Issue 13, 1 July 2018, Pages i133–i141. doi: </span><a href="https://doi.org/10.1093/bioinformatics/bty248" style="color:rgb(0,111,183);margin:0px;padding:0px;border:0px;font-stretch:inherit;line-height:inherit;vertical-align:baseline;word-wrap:break-word;word-break:break-word">https://doi.org/10.1093/bioinformatics/bty248</a></font></li></ul></ul></ul>\\ <div>\\ <ul></ul>\\ </div>\\ <div>\\ <div>\\ <ul><li><font size="4">Scientific Webinar Series this Month: June 22, 2018</font></li></ul>\\ <ul>\\ <ul><li><b style="background-color:transparent;font-size:medium;font-family:arial,sans-serif">Presenter: </b><span style="background-color:transparent"><font size="3"><font face="arial, sans-serif"><b>Nicola Neretti</b></font><font face="arial, sans, sans-serif"><span style="white-space:pre-wrap"> (Brown University) </span></font></font><b style="font-family:arial,sans,sans-serif;font-size:medium;white-space:pre-wrap">- </b></span><span style="background-color:transparent;font-size:medium;white-space:pre-wrap"><font face="arial, sans, sans-serif"><b> </b></font></span><font face="arial, sans, sans-serif" size="3"><span style="white-space:pre-wrap"> Inference and Validation of Chromosomes' 3D Structure<br>\\ </span></font></li></ul></ul>\\ </div>\\ </div>\\ </div>\\ </div>\\ <blockquote style="margin:0 0 0 40px;border:none;padding:0px">\\ <blockquote style="margin:0 0 0 40px;border:none;padding:0px">\\ <blockquote style="margin:0 0 0 40px;border:none;padding:0px">\\ <div>\\ <div>\\ <div>\\ <div>\\ <div><font style="background-color:transparent;font-size:10pt;font-family:arial,sans-serif"><span style="white-space:pre-wrap">[</span></font><span style="background-color:transparent;font-size:10pt;font-family:arial,sans-serif;white-space:pre-wrap"><a href="https://docs.google.com/a/4dnucleome.org/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDoxNTMyYjc4NzY4Nzc5MTZk">Link to presenter slides</a></span><font style="background-color:transparent;font-size:10pt;font-family:arial,sans-serif;white-space:pre-wrap">]</font></div>\\ </div>\\ </div>\\ </div>\\ </div>\\ </blockquote>\\ </blockquote>\\ </blockquote>\\ <div>\\ <div>\\ <div>\\ <ul>\\ <ul><li><b style="background-color:transparent;font-size:medium;font-family:arial,sans-serif">Presenter: <b style="color:rgb(34,34,34);font-family:arial;background-color:transparent;font-size:17.3333px">Andrew Field</b> </b><span style="background-color:transparent"><font face="arial, sans-serif" size="3">(Harvard Medical School) </font></span><b style="background-color:transparent;font-size:medium;font-family:arial,sans-serif">- </b><span style="background-color:transparent;font-size:medium;white-space:pre-wrap"><font face="arial, sans, sans-serif"><b> </b></font></span><font face="arial, sans, sans-serif" size="3"><span style="white-space:pre-wrap">Elucidating the role of nascent RNA at enhancers</span></font></li></ul></ul>\\ </div>\\ </div>\\ </div>\\ <blockquote style="margin:0 0 0 40px;border:none;padding:0px">\\ <blockquote style="margin:0 0 0 40px;border:none;padding:0px">\\ <blockquote style="margin:0 0 0 40px;border:none;padding:0px">\\ <div>\\ <div><font style="font-size:10pt;background-color:transparent;font-family:arial,sans-serif"><span style="white-space:pre-wrap">[</span></font><span style="font-size:10pt;background-color:transparent;font-family:arial,sans-serif;white-space:pre-wrap"><a href="https://docs.google.com/a/4dnucleome.org/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDoyNGFkODM5NTcwNzg5NDgz">Link to presenter slides</a></span><font style="font-size:10pt;background-color:transparent;font-family:arial,sans-serif;white-space:pre-wrap">]</font><span style="background-color:transparent;font-size:10pt"> </span><img src="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/newsletter/small_youtube_icon.png?attachauth=ANoY7cq-eNZq7SE8h4BXMOU8NJmcQ7cksyMGtpmyzYKcv6fldezFlwwc9BtzXFA5hqpmn-FhVApuVIWm8IoW8swhmCTV47obTBFXOUEKqjOPK5dBznlUGTcqd1B34zbtpBbZDR3HmnDCcOEQz-Kx1uHrJi6l9bqPTKE94BWGOSJHwJBniA7Q7xxsS1XpizDA8dtkQYVPxqnj2NQMo3hA291__aMT8Celf-cs_HolUnUxEHEsfhzaTPMJFOuVosG5A10O38sWqgpU&attredirects=1" style="background-color:transparent;font-size:10pt"> <a href="https://youtu.be/PC5v5axTSFs" style="background-color:transparent;font-size:10pt">https://youtu.be/PC5v5axTSFs</a></div>\\ </div>\\ <div><font style="font-size:10pt;background-color:transparent;font-family:arial,sans-serif;white-space:pre-wrap"><br>\\</font></div>\\ </blockquote>\\ </blockquote>\\ </blockquote>\\ <div>\\ <div style="font-size:13.3333px"><b style="background-color:transparent;font-size:xx-large;color:rgb(11,83,148)"><font face="georgia, serif">May 2018</font></b><span style="background-color:transparent"> </span></div>\\ <div>\\ <ul><li style="font-size:13.3333px"><font size="4">Registration for the 2018 4DN Annual Meeting (Dec 5-7, 2018) is open. </font></li>\\ <ul style="font-size:13.3333px"><li><font size="4"><b style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:12.8px"><font size="4" style="color:rgb(17,85,204)"><a href="http://4dn-annual-meetings.fluidreview.com/" style="color:rgb(17,85,204)">CLICK HERE TO REGISTER</a></font></b></font></li>\\ <li><b style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:12.8px"><font size="4" style="color:rgb(17,85,204)"><a href="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/meetings-and-committees/2018-annual-meeting" style="color:rgb(17,85,204)">Click here to go the Annual Meeting wiki page for more information</a></font></b></li></ul></ul>\\ <ul><li><font size="4">Upcoming workshops and conferences:</font></li>\\ <ul><li><font size="4"><a href="https://www.grc.org/centromere-biology-conference/2018/">Centromere Biology - 2018 Gordon Research Conference</a></font></li>\\ <ul><li><font size="4">When: July 29 - August 3, 2018</font></li>\\ <li><font size="4">Where: Mount Snow Resort, West Dover, Vermont, USA</font></li>\\ <li><font size="4">Organizers: Aaron Straight and Sylvia Erhardt</font></li></ul></ul></ul>\\ <div>\\ <ul><li><font size="4">Job Opportunities: <span style="background-color:transparent">Please c<span style="background-color:transparent">heck the </span><a href="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/job-opportunities" style="background-color:transparent">4DN Job Advertisement page</a> for detail information. </span></font></li>\\ <ul><li><font size="4"><span style="background-color:transparent">1 new job opportunity: </span></font></li>\\ <ul><li><font size="3"><span style="background-color:transparent">Postdoc positions (multiple, including NIH-funded Nucleomics project) -- </span>California Institute of Technology (<a href="http://ismagilovlab.caltech.edu/positions/index.shtml">Link to detail</a>)</font></li></ul>\\ <li><font size="4"><span style="background-color:transparent">5 previous job opportunities are still open. </span></font></li></ul></ul>\\ <div>\\ <ul><li><font size="4">4DN Publications</font></li>\\ <ul><li><font size="4">Stats by May 31, 2018</font></li>\\ <ul><li><font size="3">Preprints (<a href="http://connect.biorxiv.org/relate/content/66">bioRxiv 4DN channel</a>): 108 in total</font></li>\\ <li><span style="font-size:medium">Publications (<a href="https://www.ncbi.nlm.nih.gov/sites/myncbi/1vMpf2j6i3bke/collections/50779401/public/">Pubmed</a>):  </span><font size="3">157 in total, 2 new publications in May</font></li></ul>\\ <li><font size="4">New publications in May: </font></li>\\ <ul><li><font size="3">Rivera-Mulia JC, Dimond A, Vera D, Trevilla-Garcia C, Sasaki T, Zimmerman J, Dupont C, Gribnau J, Fraser P, Gilbert DM. Allele-specific control of replication timing and genome organization during development. <i>Genome Res</i>. 2018 May 7 [Epub ahead of print]. <a href="https://genome.cshlp.org/content/early/2018/05/07/gr.232561.117.long">doi: 10.1101/gr.232561.117</a></font></li>\\ <li><font size="3">Marchal C, Sasaki T, Vera D, Wilson K, Sima J, Rivera-Mulia JC, Trevilla-García C, Nogues C, Nafie E, Gilbert DM. Genome-wide analysis of replication timing by next-generation sequencing with E/L Repli-seq.<i>Nat Protoc</i><span style="font-family:arial,helvetica,clean,sans-serif">. 2018 May;13(5):819-839.<a href="https://www.nature.com/articles/nprot.2017.148"> doi: 10.1038/nprot.2017.148</a></span></font></li></ul></ul></ul>\\ <ul><li><font size="4"><font color="#0000ff"><b><font color="#0000ff"><b><a href="https://www.youtube.com/playlist?list=PLiJ0I11RAJ2rPJHImnuFiQJg7P1qsBhop">4DN Youtube Channel</a> </b></font></b></font></font></li>\\ <ul><li><font size="4">3 new videos released on the <a href="https://www.youtube.com/playlist?list=PLiJ0I11RAJ2rPJHImnuFiQJg7P1qsBhop" style="margin:0px;padding:0px;border:0px;background-image:initial;background-position:initial;background-repeat:initial;color:rgb(22,122,198);white-space:nowrap"><font face="arial, sans-serif">4D Nucleome Scientific Webinar Series</font></a> playlist.</font></li>\\ <ul><li><font size="3"><a href="https://www.youtube.com/watch?v=rhQu9-as16Y">CUT&RUN: Efficient genome-wide profiling of the epigenomic landscape </a></font></li>\\ <li><font size="3"><a href="https://youtu.be/PFskL_9TfI4">Looking beyond pairwise 3D conformation of the genome by MC-4C</a></font></li>\\ <li><font size="3"><a href="https://youtu.be/vzy4WbU5Y5Q">How the Genome Awakens in Zebrafish</a></font></li></ul></ul></ul>\\ <ul><li><font size="4">Scientific Webinar Series this Month: May 25, 2018</font></li>\\ <ul><li><b style="background-color:transparent;font-size:medium;font-family:arial,sans-serif">Presenter: </b><span style="background-color:transparent"><font><font face="arial, sans-serif" size="3"><b>Amin Allahyar</b></font><font face="arial, sans, sans-serif" size="3"><span style="white-space:pre-wrap"> (Hubrecht Institute) </span></font><b style="font-family:arial,sans,sans-serif;font-size:medium;white-space:pre-wrap">- </b></font></span><span style="background-color:transparent;font-size:medium;white-space:pre-wrap"><font face="arial, sans, sans-serif"><b> </b></font></span><font face="arial, sans, sans-serif" size="3"><span style="white-space:pre-wrap">Looking beyond pairwise 3D conformation of the genome by MC-4C HD</span></font></li></ul></ul>\\ </div>\\ </div>\\ </div>\\ </div>\\ <blockquote style="margin:0 0 0 40px;border:none;padding:0px">\\ <blockquote style="margin:0 0 0 40px;border:none;padding:0px">\\ <blockquote style="margin:0 0 0 40px;border:none;padding:0px"><a href="https://docs.google.com/a/4dnucleome.org/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDo3MDI5NjBhNmViMDVkNDY5"><font style="background-color:transparent;font-size:10pt;font-family:arial,sans-serif"><span style="white-space:pre-wrap">[</span></font><span style="background-color:transparent;font-size:10pt;font-family:arial,sans-serif;white-space:pre-wrap">Link to presenter slides</span><font style="background-color:transparent;font-size:10pt;font-family:arial,sans-serif;white-space:pre-wrap">]</font></a>   <img src="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/newsletter/small_youtube_icon.png?attachauth=ANoY7cq-eNZq7SE8h4BXMOU8NJmcQ7cksyMGtpmyzYKcv6fldezFlwwc9BtzXFA5hqpmn-FhVApuVIWm8IoW8swhmCTV47obTBFXOUEKqjOPK5dBznlUGTcqd1B34zbtpBbZDR3HmnDCcOEQz-Kx1uHrJi6l9bqPTKE94BWGOSJHwJBniA7Q7xxsS1XpizDA8dtkQYVPxqnj2NQMo3hA291__aMT8Celf-cs_HolUnUxEHEsfhzaTPMJFOuVosG5A10O38sWqgpU&attredirects=1" style="background-color:transparent;font-size:10pt"> <a href="https://youtu.be/PFskL_9TfI4" style="background-color:transparent;font-size:10pt">https://youtu.be/PFskL_9TfI4</a></blockquote>\\ </blockquote>\\ </blockquote>\\ <div>\\ <div>\\ <div>\\ <div>\\ <div>\\ <div>\\ <div>\\ <div>\\ <div>\\ <div>\\ <ul>\\ <ul><li><b style="background-color:transparent;font-size:medium;font-family:arial,sans-serif">Presenter: Brad Cairns </b><span style="background-color:transparent"><font face="arial, sans-serif" size="3">(University of Utah) and <b>Antonio Giraldez</b> (Yale University) </font></span><b style="background-color:transparent;font-size:medium;font-family:arial,sans-serif">- </b><span style="background-color:transparent;font-size:medium;white-space:pre-wrap"><font face="arial, sans, sans-serif"><b> </b></font></span><font face="arial, sans, sans-serif" size="3"><span style="white-space:pre-wrap">How the Genome Awakens in Zebrafish</span></font></li></ul></ul>\\ </div>\\ </div>\\ </div>\\ </div>\\ </div>\\ </div>\\ </div>\\ </div>\\ </div>\\ </div>\\ <blockquote style="margin:0 0 0 40px;border:none;padding:0px">\\ <blockquote style="margin:0 0 0 40px;border:none;padding:0px">\\ <blockquote style="margin:0 0 0 40px;border:none;padding:0px">\\ <div><a href="https://docs.google.com/a/4dnucleome.org/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDo1ZWM0YWRkNTkzNmRlOTcy"><font style="background-color:transparent;font-size:10pt;font-family:arial,sans-serif"><span style="white-space:pre-wrap">[</span></font><span style="background-color:transparent;font-size:10pt;font-family:arial,sans-serif;white-space:pre-wrap">Link to presenter slides</span><font style="background-color:transparent;font-size:10pt;font-family:arial,sans-serif;white-space:pre-wrap">]</font></a>   <img src="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/newsletter/small_youtube_icon.png?attachauth=ANoY7cq-eNZq7SE8h4BXMOU8NJmcQ7cksyMGtpmyzYKcv6fldezFlwwc9BtzXFA5hqpmn-FhVApuVIWm8IoW8swhmCTV47obTBFXOUEKqjOPK5dBznlUGTcqd1B34zbtpBbZDR3HmnDCcOEQz-Kx1uHrJi6l9bqPTKE94BWGOSJHwJBniA7Q7xxsS1XpizDA8dtkQYVPxqnj2NQMo3hA291__aMT8Celf-cs_HolUnUxEHEsfhzaTPMJFOuVosG5A10O38sWqgpU&attredirects=1" style="background-color:transparent;font-size:10pt"> <a href="https://youtu.be/vzy4WbU5Y5Q" style="background-color:transparent;font-size:10pt">https://youtu.be/vzy4WbU5Y5Q</a><span style="background-color:transparent;font-size:10pt"> </span></div>\\ </blockquote>\\ </blockquote>\\ </blockquote>\\ <div>\\ <div>\\ <div>\\ <div>\\ <div>\\ <div>\\ <div>\\ <div>\\ <div>\\ <div><font size="4"><br>\\</font></div>\\ <ul></ul>\\ </div>\\ <div>\\ <ul></ul>\\ </div>\\ </div>\\ <div style="font-size:13.3333px"><b style="background-color:transparent;font-size:xx-large;color:rgb(11,83,148)"><font face="georgia, serif">April 2018</font></b><span style="background-color:transparent"> </span></div>\\ <div>\\ <ul style="font-size:13.3333px"><li><font size="4">Registration for the 2018 4DN Annual Meeting (Dec 5-7, 2018) is open now. </font></li>\\ <ul><li><font size="4"><b style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:12.8px"><font size="4" style="color:rgb(17,85,204)"><a href="http://4dn-annual-meetings.fluidreview.com/" style="color:rgb(17,85,204)">CLICK HERE TO REGISTER</a></font></b></font></li>\\ <li><b style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:12.8px"><font size="4" style="color:rgb(17,85,204)"><a href="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/meetings-and-committees/2018-annual-meeting" style="color:rgb(17,85,204)">Click here to the annual meeting wiki page for more information</a></font></b></li></ul></ul>\\ <ul><li><font size="4">Announcing <a href="https://groups.google.com/a/4dnucleome.org/forum/#!forum/4dn-cell-eng">4DN Cell Engineering Discussion Group</a>, a forum for making and sharing new engineered cell lines. </font></li></ul>\\ <ul style="font-size:13.3333px"><li><font size="4">Announcing <a href="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/collaboration-plaza">Collaboration plaza</a>, a new wiki page for seeking collaboration opportunities within the 4DN network. </font></li></ul>\\ <ul><li><font size="4">Job Opportunities:<span style="background-color:transparent"> 5 job opportunities are still open. Please c</span><span style="background-color:transparent">heck detail information on </span><a href="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/job-opportunities" style="background-color:transparent">4DN Job Advertisement page</a>.</font></li></ul>\\ <ul style="font-size:13.3333px"></ul>\\ </div>\\ <div>\\ <ul><li style="font-size:13.3333px"><font size="4">4DN Publications</font></li>\\ <ul><li><font size="4">Stats by Apr 30, 2018</font></li>\\ <ul><li><font size="3">Preprints (<a href="http://connect.biorxiv.org/relate/content/66">bioRxiv 4DN channel</a>):  108 in total, 3 new preprints in April</font></li>\\ <li><font size="3">Publications (<a href="https://www.ncbi.nlm.nih.gov/sites/myncbi/1vMpf2j6i3bke/collections/50779401/public/">Pubmed</a>):  156 in total.</font></li></ul>\\ <li style="font-size:13.3333px"><font size="4">New preprints in April:</font></li>\\ <ul><li><font size="3">RNAs as proximity labeling media for identifying nuclear speckle positions relative to the genome. Weizhong Chen, Zhangming Yan, Simin Li, Norman Huang, Xuerui Huang, Jin Zhang, Sheng Zhong. doi<span style="background-color:transparent">: <a href="https://doi.org/10.1101/300483">https://doi.org/10.1101/300483</a></span></font></li>\\ <li><font size="3">Pattern-Driven Navigation in 2D Multiscale Visual Spaces with Scalable Insets. Fritz Lekschas,  Michael Behrisch,  Benjamin Bach,  Peter Kerpedjiev,  Nils Gehlenborg,  Hanspeter Pfister. doi<span style="background-color:transparent">: <a href="https://doi.org/10.1101/301036">https://doi.org/10.1101/301036</a></span></font></li>\\ <li><font size="3">TSA-Seq Mapping of Nuclear Genome Organization. Yu Chen, Yang Zhang, Yuchuan Wang, Liguo Zhang, Eva K. Brinkman, Stephen A. Adam, Robert Goldman, Bas van Steensel, Jian Ma, Andrew S. Belmont. doi<span style="background-color:transparent">: <a href="https://doi.org/10.1101/307892">https://doi.org/10.1101/307892</a></span></font></li></ul></ul></ul>\\ <ul><li><font size="4">Scientific Webinar Series this Month:</font></li></ul>\\ <ul>\\ <div>\\ <p style="line-height:16.6667px"><b style="background-color:transparent"><font face="arial, sans-serif" size="3">April 27, 2018 </font></b></p>\\ </div>\\ <div></div>\\ <ul>\\ <p><font size="3"><b style="font-family:arial,sans-serif">Presenter:  </b><span style="background-color:transparent"><font color="#222222" face="Arial"><b>Karla Neugebauer</b></font><font face="arial, sans, sans-serif"><span style="white-space:pre-wrap"> (</span></font></span><font face="arial, sans, sans-serif"><span style="white-space:pre-wrap">Yale University</span></font><span style="background-color:transparent"><font face="arial, sans, sans-serif"><span style="white-space:pre-wrap">) </span><b style="white-space:pre-wrap">- </b></font></span>The Cell Nucleus under Stress</font></p>\\ <font style="font-size:10pt;background-color:transparent;font-family:arial,sans-serif"><span style="white-space:pre-wrap">[</span></font><span style="font-size:10pt;background-color:transparent;font-family:arial,sans-serif;white-space:pre-wrap"><a href="https://docs.google.com/a/4dnucleome.org/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDozNjY3NGFmNzkyNGE0ODFl">Link to presenter slides</a></span><font style="font-size:10pt;background-color:transparent;font-family:arial,sans-serif;white-space:pre-wrap">]</font>\\ <p><b style="background-color:transparent;font-size:medium;font-family:arial,sans-serif">Presenter:  </b><span style="background-color:transparent"><font><font color="#222222" face="Arial" size="3"><b>Steve Henikoff </b></font><font face="arial, sans, sans-serif" size="3"><span style="white-space:pre-wrap">(</span></font></font></span><font face="arial, sans, sans-serif" size="3"><span style="white-space:pre-wrap">Fred Hutchinson Cancer Research Center</span></font><span style="background-color:transparent;font-size:medium"><font face="arial, sans, sans-serif"><span style="white-space:pre-wrap">) </span><b style="white-space:pre-wrap">- </b></font></span><span style="font-size:medium;background-color:transparent">CUT&RUN: Efficient genome-wide profiling of the epigenomic landscape </span></p>\\ <font style="font-size:10pt;background-color:transparent;font-family:arial,sans-serif"><span style="white-space:pre-wrap">[</span></font><span style="font-size:10pt;background-color:transparent;font-family:arial,sans-serif;white-space:pre-wrap"><a href="https://docs.google.com/a/4dnucleome.org/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDozNjMyZjQzMWU0M2YyMmQ1">Link to presenter slides</a></span><font style="font-size:10pt;background-color:transparent;font-family:arial,sans-serif;white-space:pre-wrap">]</font></ul></ul>\\ <ul>\\ <ul><font size="4">\\ <ul><font size="4"><br>\\</font></ul>\\ </font></ul></ul>\\ </div>\\ <div style="font-size:13.3333px"><b style="background-color:transparent;font-size:xx-large;color:rgb(11,83,148)"><font face="georgia, serif">March 2018</font></b><span style="background-color:transparent"> </span></div>\\ <div>\\ <ul><li><font size="4">Announcing <a href="https://groups.google.com/a/4dnucleome.org/forum/#!forum/4dn-cell-eng">4DN Cell Engineering Discussion Group</a>, a forum for making and sharing new engineered cell lines. </font></li></ul>\\ <ul><li><font size="4">Announcing <a href="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/collaboration-plaza">Collaboration plaza</a>, a new wiki page for seeking collaboration opportunities within the 4DN network. </font></li></ul>\\ <ul><li><font size="4">New Job Opportunities:<span style="background-color:transparent"> </span><span style="background-color:transparent">Check detail information on </span><a href="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/job-opportunities" style="background-color:transparent">4DN Job Advertisement page </a></font></li></ul>\\ <ul>\\ <ol><li><font size="3">Senior Computational Biologist -- The Florida State University (FSU) Center for Genomics (CGPM)</font></li>\\ <li><font size="3">Computational biology postdoc position to analyze chromatin architecture in cancer -- Jane Skok and Richard Bonneau New York University School of Medicine and NYU Data Sciences</font></li>\\ <li><font size="3">Postdoc position to study chromatin architecture in cancer: experience in chromosome conformation and capture AND CRISPR preferred -- Jane Skok and New York University School of Medicine</font></li>\\ <li><font size="3">Postdoc position to study dynamic chromatin architecture and transcription in developmental systems -- Thomas Gregor, Princeton University (USA) and Institut Pasteur (France)</font></li>\\ <li><font size="3">Assistant in Research (12 month salaried, Molecular Biology) -- <span style="background-color:transparent">Florida State University </span>Department of Biological Science Core Facility</font></li>\\ </ol></ul>\\ <ul><li><font size="4">4DN Publications</font></li>\\ <ul><li><font size="3">Stats by Mar 31, 2018</font></li>\\ <ul><li><font size="3">Preprints (<a href="http://connect.biorxiv.org/relate/content/66">bioRxiv 4DN channel</a>):  105 in total.</font></li>\\ <li><font size="3">Publications (<a href="https://www.ncbi.nlm.nih.gov/sites/myncbi/1vMpf2j6i3bke/collections/50779401/public/">Pubmed</a>):  156 in total. 1 new publication in March, 2018. </font></li></ul>\\ <li><font size="3">Recent publication highlights:</font></li>\\ <ul><li><font size="3">J. H. Gibcus, K.Samejima, L. Goloborodko, I. Samejima, N. Naumova, J. Nuebler, M. T. Kanemaki, L. Xie, J. R. Paulson, W. C. Earnshaw, L. A. Mirny, J. Dekker, <a href="http://science.sciencemag.org/content/359/6376/eaao6135.long">A pathway for mitotic chromosome formation</a>.<i> Science</i> 359, eaao6135 (2018).</font></li>\\ <li><font size="3">M. Ganji, I. A.Shaltiel, S. Bisht, E. Kim, A. Kalichava, C. H. Haering, C. Dekker. <a href="http://science.sciencemag.org/content/early/2018/02/21/science.aar7831.full">Real-time imaging of DNA loop extrusion by condensing</a>. <i>Science </i>359, eaar7831(2018). </font></li></ul></ul></ul>\\ <ul></ul>\\ <ul><li><font size="4"><font color="#0000ff"><b><font color="#0000ff"><b><a href="https://www.youtube.com/playlist?list=PLiJ0I11RAJ2rPJHImnuFiQJg7P1qsBhop">4DN Youtube Channel</a></b></font></b></font> released two new videos from Scientific Webinar Series (Feb 23, 2018).</font></li>\\ <ul><li><font size="3"><a href="https://www.youtube.com/watch?v=8h4xF77wfb8&list=PLiJ0I11RAJ2rPJHImnuFiQJg7P1qsBhop&index=2&t=0s"><span style="background-color:transparent"><font face="arial, sans, sans-serif"><span style="white-space:pre-wrap"><b>Paul Fields</b> (</span></font></span><font face="arial, sans, sans-serif" style="background-color:transparent"><span style="white-space:pre-wrap">University of Washington</span></font><span style="background-color:transparent"><font face="arial, sans, sans-serif"><span style="white-space:pre-wrap">) </span><b style="white-space:pre-wrap">- </b></font></span><span style="background-color:transparent">Dynamics of Genome Reorganization during Human Cardiogenesis </span></a></font></li>\\ <li><a href="https://www.youtube.com/watch?v=m4OC3kWfqOk&list=PLiJ0I11RAJ2rPJHImnuFiQJg7P1qsBhop&index=1&t=0s"><b style="font-size:medium;background-color:transparent;font-family:arial,sans-serif">Caroline Bartman</b><span style="font-size:medium;background-color:transparent"><font face="arial, sans, sans-serif"><span style="white-space:pre-wrap"> (University of Pennsylvania) </span><b style="white-space:pre-wrap">- </b></font></span><span style="font-size:medium;background-color:transparent;color:rgb(34,34,34);font-family:Arial">Frequency modulation of polymerase recruitment via transcriptional bursting is a dominant mode of transcriptional regulation </span></a></li></ul></ul>\\ <ul></ul>\\ <ul><li><font size="4">Scientific Webinar Series this Month:</font></li></ul>\\ <ul>\\ <div>\\ <p style="line-height:16.6667px"><b style="background-color:transparent"><font face="arial, sans-serif" size="3">March 23, 2018 </font></b></p>\\ </div>\\ <div></div>\\ <ul>\\ <p><font size="3"><b style="font-family:arial,sans-serif">Presenter:  </b><span style="background-color:transparent"><font face="arial, sans, sans-serif"><span style="white-space:pre-wrap"><b><b style="color:rgb(34,34,34);font-family:Arial;white-space:normal">Rajarshi P Ghosh</b></b> (</span></font></span><span style="white-space:pre-wrap;font-family:arial,sans,sans-serif;background-color:transparent">Stanford University</span><span style="background-color:transparent"><font face="arial, sans, sans-serif"><span style="white-space:pre-wrap">) </span><b style="white-space:pre-wrap">- </b></font></span><span style="background-color:transparent">Chromatin dynamics: Motional signatures of transcriptional state</span><span style="background-color:transparent"> </span></font></p>\\ <font size="2"><a href="https://docs.google.com/a/4dnucleome.org/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDoxMzE0MjQxMjM5MmU3ODNj"><font style="background-color:transparent;font-family:arial,sans-serif"><span style="white-space:pre-wrap">[</span></font><span style="background-color:transparent;font-family:arial,sans-serif;white-space:pre-wrap">Link to presenter slides</span><font style="background-color:transparent;font-family:arial,sans-serif;white-space:pre-wrap">]</font></a></font></ul></ul>\\ </div>\\ <ul style="font-size:13.3333px"></ul>\\ </div>\\ <div style="font-size:13.3333px"><b style="background-color:transparent;font-size:xx-large;color:rgb(11,83,148)"><font face="georgia, serif"><br>\\</font></b></div>\\ <div style="font-size:13.3333px"><b style="background-color:transparent;font-size:xx-large;color:rgb(11,83,148)"><font face="georgia, serif">February 2018</font></b><span style="background-color:transparent"> </span></div>\\ </div>\\ <ul><li><font size="4"><font color="#0000ff"><b><a href="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/job-opportunities">Job advertisement page</a></b></font> is created on 4DN wiki. Welcome to post job advertisement!</font></li></ul>\\ <ul><li><font size="4">4DN Scientific Webinar Series videos are on<a href="https://www.youtube.com/playlist?list=PLiJ0I11RAJ2rPJHImnuFiQJg7P1qsBhop"><font color="#e06666"> </font></a><font color="#0000ff"><b><font color="#0000ff"><b><a href="https://www.youtube.com/playlist?list=PLiJ0I11RAJ2rPJHImnuFiQJg7P1qsBhop">4DN Youtube Channel</a></b></font></b></font> now. </font></li></ul>\\ <ul><li><font size="4">Scientific Webinar Series this Month: The videos of the two presentations will be released on<a href="goog_672507352"> </a></font><font style="font-size:large"><span style="font-size:large">4DN Youtube Channel.</span> </font></li>\\ <div>\\ <p style="line-height:16.6667px"><b style="background-color:transparent"><font face="arial, sans-serif"><font size="4"><font color="#3d85c6">  </font>February 23, 2018 </font></font></b></p>\\ </div>\\ <div></div>\\ <ul style="font-size:large">\\ <p><b style="color:rgb(0,0,0);font-family:arial,sans-serif">Presenter:  </b><span style="background-color:transparent"><font face="arial, sans, sans-serif"><span style="white-space:pre-wrap"><b>Paul Fields</b> (</span></font></span><font face="arial, sans, sans-serif" style="background-color:transparent"><span style="white-space:pre-wrap">University of Washington</span></font><span style="background-color:transparent"><font face="arial, sans, sans-serif"><span style="white-space:pre-wrap">) </span><b style="white-space:pre-wrap">- </b></font></span><span style="background-color:transparent">Dynamics of Genome Reorganization during Human Cardiogenesis </span></p>\\ <font style="font-size:10pt;background-color:transparent;font-family:arial,sans-serif"><span style="white-space:pre-wrap">[</span></font><span style="font-size:10pt;background-color:transparent;font-family:arial,sans-serif;white-space:pre-wrap"><a href="https://docs.google.com/a/4dnucleome.org/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDoxOWFhNTQxNTJlNWIyOTVh">Link to presenter slides</a></span><font style="font-size:10pt;background-color:transparent;font-family:arial,sans-serif;white-space:pre-wrap">]</font>\\ <p><b style="color:rgb(0,0,0);font-family:arial,sans-serif">Presenter:  </b><b style="color:rgb(0,0,0);font-family:arial,sans-serif;background-color:transparent">Caroline Bartman</b><span style="background-color:transparent"><font face="arial, sans, sans-serif"><span style="white-space:pre-wrap"> (University of Pennsylvania) </span><b style="color:rgb(0,0,0);white-space:pre-wrap">- </b></font></span><span style="color:rgb(34,34,34);font-family:Arial;background-color:transparent">Frequency modulation of polymerase recruitment via transcriptional bursting is a dominant mode of transcriptional regulation </span></p>\\ <font style="font-size:10pt;background-color:transparent;font-family:arial,sans-serif"><span style="white-space:pre-wrap">[</span></font><span style="font-size:10pt;background-color:transparent;font-family:arial,sans-serif;white-space:pre-wrap"><a href="https://docs.google.com/a/4dnucleome.org/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDozYTg4NGQ4YmI4Njg4MDc0">Link to presenter slides</a></span><font style="font-size:10pt;background-color:transparent;font-family:arial,sans-serif;white-space:pre-wrap">]</font><font style="font-size:10pt;background-color:transparent;font-family:arial,sans-serif;white-space:pre-wrap"><br>\\</font></ul></ul>\\ <ul><li><font size="4">4DN Publications</font></li>\\ <ul><li><font size="4">Stats by Feb 28, 2018</font></li>\\ <ul><li><font size="4">Preprints (<a href="http://connect.biorxiv.org/relate/content/66">bioRxiv 4DN channel</a>):  105 in total, 64 out of them unpublished. 5 new preprints in Feb 2018.</font></li>\\ <li><font size="4">Publications (<a href="https://www.ncbi.nlm.nih.gov/sites/myncbi/1vMpf2j6i3bke/collections/50779401/public/">Pubmed</a>): 155 in total. </font></li></ul>\\ <ul></ul></ul></ul>\\ <ul></ul>\\ <ul></ul>\\ <ul><li><font size="4">Job Opportunities:</font></li>\\ <ul><li><font size="4">\\ <table border="1" cellpadding="0" cellspacing="0" dir="ltr" style="table-layout:fixed;font-size:10pt;font-family:arial,sans,sans-serif;width:0px;border-collapse:collapse;border:none">\\ <colgroup>\\ <col width="56">\\ <col width="195">\\ <col width="210">\\ <col width="166">\\ <col width="95">\\ <col width="93">\\ <col width="69">\\ <col width="107">\\ <col width="80"></colgroup>\\ <tbody>\\ <tr style="height:21px">\\ <td style="overflow:hidden;padding:2px 3px 2px 3px;vertical-align:middle;background-color:#3c78d8"></td>\\ <td style="overflow:hidden;padding:2px 3px 2px 3px;vertical-align:middle;background-color:#3c78d8"><font color="#ffffff"><b>Position/Title</b></font></td>\\ <td style="overflow:hidden;padding:2px 3px 2px 3px;vertical-align:middle;background-color:#3c78d8"><font color="#ffffff"><b>Employer</b></font></td>\\ <td style="overflow:hidden;padding:2px 3px 2px 3px;vertical-align:middle;background-color:#3c78d8"><font color="#ffffff"><b>Job Type</b></font></td>\\ <td style="overflow:hidden;padding:2px 3px 2px 3px;vertical-align:middle;background-color:#3c78d8"><font color="#ffffff"><b>Post Date</b></font></td>\\ <td style="overflow:hidden;padding:2px 3px 2px 3px;vertical-align:middle;background-color:#3c78d8"><font color="#ffffff"><b>Deadline</b></font></td>\\ <td style="overflow:hidden;padding:2px 3px 2px 3px;vertical-align:middle;background-color:#3c78d8"><font color="#ffffff"><b>Status</b></font></td>\\ <td style="overflow:hidden;padding:2px 3px 2px 3px;vertical-align:middle;background-color:#3c78d8"><font color="#ffffff"><b>Apply methods / contacts</b></font></td>\\ <td style="overflow:hidden;padding:2px 3px;vertical-align:middle;background-color:rgb(60,120,216);font-weight:bold;word-wrap:break-word;color:rgb(255,255,0)">Detail Link</td>\\ </tr>\\ <tr style="height:21px">\\ <td style="overflow:hidden;padding:2px 3px;vertical-align:middle;word-wrap:break-word;text-align:center">1</td>\\ <td style="overflow:hidden;padding:2px 3px;vertical-align:middle;word-wrap:break-word">Senior Computational Biologist</td>\\ <td style="overflow:hidden;padding:2px 3px;vertical-align:middle;word-wrap:break-word">The Florida State University (FSU) Center for Genomics (CGPM)</td>\\ <td style="overflow:hidden;padding:2px 3px;vertical-align:middle;font-family:sans-serif;font-size:9pt;word-wrap:break-word">Full-time non-tenure-track</td>\\ <td style="overflow:hidden;padding:2px 3px;vertical-align:middle;word-wrap:break-word">Feb 10, 2018</td>\\ <td style="overflow:hidden;padding:2px 3px;vertical-align:middle;word-wrap:break-word">NA</td>\\ <td style="overflow:hidden;padding:2px 3px;vertical-align:middle;word-wrap:break-word">Open</td>\\ <td style="overflow:hidden;padding:2px 3px;vertical-align:middle;word-wrap:break-word">Online apply</td>\\ <td style="overflow:hidden;padding:2px 3px;vertical-align:middle;word-wrap:break-word;color:rgb(17,85,204)"><a href="https://www.indeed.com/m/viewjob?jk=02054377ee0aec74&from=serp&prevUrl=https://www.indeed.com/m/jobs?q=Computational+biologist&l=Tallahassee%2C+FL">Indeed</a></td>\\ </tr>\\ </tbody>\\ </table>\\ </font></li></ul></ul>\\ <ul></ul>\\ <ul></ul>\\ <div style="font-size:13.3333px"><b style="background-color:transparent;font-size:xx-large;color:rgb(11,83,148)"><font face="georgia, serif">January 2018</font></b></div>\\ <div>\\ <ul><li><font size="4">4DN Program Announces Associate Membership</font><span style="font-size:13.3333px">. </span><font size="4">Read the <a href="https://commonfund.nih.gov/sites/default/files/4DN%20Associate%20Membership.pdf">PDF file</a> for more information.</font></li></ul>\\ <ul><li><font size="4">Scientific Webinar Series this Month: </font></li>\\ <div>\\ <p style="line-height:16.6667px"><b style="background-color:transparent"><font color="#3d85c6" face="arial, sans-serif"><font size="4"><span>    </span><span>    </span>January 26, 2018</font></font></b></p>\\ </div>\\ <div></div>\\ <font color="#3d85c6" size="4">\\ <ul style="color:rgb(0,0,0)">\\ <div>\\ <p><b style="font-family:arial,sans-serif">Presenter:  </b><span style="background-color:transparent;white-space:pre-wrap"><font face="arial, sans, sans-serif"><b>Yi Kou</b> (University of Southern California) <b>- </b></font></span><span style="background-color:transparent">Mapping genome 3D structure by direct DNA-DNA photo-crosslinking and click enrichment</span></p>\\ <p><b style="font-family:arial,sans-serif">Presenter:  </b><span style="background-color:transparent;white-space:pre-wrap"><font face="arial, sans, sans-serif"><b>Paul Olivier</b> (University of Toronto) <b>- </b></font></span><span style="color:rgb(34,34,34);font-family:Arial;background-color:transparent">Developing a new framework to detect and link protein complexes to specific chromatin interactions</span></p>\\ <p style="line-height:16.6667px"><span style="color:rgb(51,51,51);font-weight:bold;background-color:transparent"><font face="arial, sans-serif"><font color="#000000" size="4"><b style="background-color:transparent">Presenter: </b><b style="background-color:transparent;font-family:arial;white-space:pre-wrap"><font face="arial, sans, sans-serif">Meizhen Zheng</font></b><font style="background-color:transparent;font-family:arial;font-weight:normal"><span style="background-color:transparent;background-image:initial;background-position:initial;background-repeat:initial"><b><font face="Arial"> </font></b></span><span style="background-color:transparent;background-image:initial;background-position:initial;background-repeat:initial"><font face="Arial">(The Jackson Laboratory of Genomic Medicine</font></span></font><font style="background-color:transparent;font-family:arial;font-weight:normal"><span style="background-color:transparent;background-image:initial;background-position:initial;background-repeat:initial"><font face="Arial">)</font></span></font><font face="arial, sans-serif" style="background-color:transparent;font-weight:normal"><span style="background-image:initial;background-position:initial;background-repeat:initial"> - </span></font><span style="background-color:transparent;font-family:arial;font-weight:normal"><font face="arial, sans-serif">Multiplex Chromatin Interaction Analysis with Single Molecule Precision</font></span></font></font></span></p>\\ </div>\\ <div style="font-size:13.3333px"></div></ul>\\ <ul><font color="#3d85c6" size="4"><b><br>\\ </b></font></ul>\\ </font></ul>\\ </div>\\ <div style="font-size:13.3333px">\\ <ul></ul>\\ </div>\\ </div>\\ <div style="font-size:13.3333px"><b style="background-color:transparent;font-size:xx-large;color:rgb(11,83,148)"><font face="georgia, serif">December 2017</font></b></div>\\ <div>\\ <ul><li><font size="4">The 4DN Data Release and Use Policy has been approved and released (check it on <a href="https://www.4dnucleome.org/policies.html">4DN web portal</a>)</font></li></ul>\\ <ul><li><br>\\ </li></ul>\\ </div>\\ <div>\\ <ul></ul>\\ </div>\\ </div>\\ <div style="font-size:13.3333px"><b style="background-color:transparent;font-size:xx-large;color:rgb(11,83,148)"><font face="georgia, serif">November 2017</font></b></div>\\ <div>\\ <ul><li><font size="4">Outreach and in-reach slides: OH prepared slides for any consortium members to change and use for 4DN outreach and in-reach activities</font></li>\\ <ul><li><font size="4"><a href="https://docs.google.com/a/eng.ucsd.edu/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDo3MzE2YmE5ZWI3OTUxNmM5" style="font-family:arial,sans-serif">Outreach slides</a></font></li>\\ <li><font size="4"><a href="https://docs.google.com/a/eng.ucsd.edu/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDo3Mzg5NGIyM2UwYmIyZWY" style="font-family:arial,sans-serif">In-reach slides</a></font></li></ul></ul>\\ <div>\\ <ul><li>\\ <div style="line-height:16.6667px"><span style="font-size:13.3333px;background-color:transparent"><font size="4">The first education video produced by 4DN has been released on YouTube. </font></span><span style="background-color:transparent"><font size="4"><a href="https://www.youtube.com/watch?v=YVv3i42JFWg">4DN Imaging Workshop: Toward Microscopy Standardization</a></font></span></div>\\ </li>\\ <ul><li><font size="4">Thanks to Dr. Grunwald for authorizing OH to make the video.</font></li>\\ <li><font size="4">Welcome to contact OH to submit or recommend 4DN related education and outreach videos.</font></li></ul></ul>\\ </div>\\ <ul><li><font size="4">Release of <a href="https://www.google.com/url?q=https%3A%2F%2Fwww.4dnucleome.org%2Fcell-lines.html&sa=D&sntz=1&usg=AFQjCNFSd5meFjxxClQbRdf2vuQwv3IF9w">cell line SOP on 4DN web portal</a>. Click on each cell line to access the SOPs and other information.</font></li></ul>\\ <ul style="font-size:13.3333px"><li><br>\\ </li></ul>\\ </div>\\ </div>\\ <div style="font-size:13.3333px"><b style="background-color:transparent;font-size:xx-large;color:rgb(11,83,148)"><font face="georgia, serif">October 2017</font></b></div>\\ <div>\\ <div>\\ <ul style="font-size:13.3333px"><li>\\ <div style="line-height:16.6667px"><span style="background-color:transparent"><font size="4"><a href="https://docs.google.com/document/d/12wyR5BxbngARaPzw2ckBi0Ws33keZTr9f8yb6HiSyH0/edit"><span style="font-size:13.3333px;background-color:transparent"><font size="4">2017 4DN Annual Meeting Report</font></span><span style="font-size:13.3333px;background-color:transparent"><font size="4">. </font></span></a></font></span></div>\\ </li></ul>\\ <div style="font-size:13.3333px">\\ <ul style="font-size:13.3333px"><li>\\ <div style="line-height:16.6667px"><span style="background-color:transparent"><font size="4"><span style="font-size:13.3333px;background-color:transparent"><font size="4"><a href="https://docs.google.com/a/4dnucleome.org/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDo4M2RiN2ViZjYzZWJmMDc">2017 4DN Annual Meeting survey results</a>. Thanks for your feedback.</font></span></font></span></div>\\ </li></ul>\\ </div>\\ </div>\\ <ul><li>\\ <div style="line-height:16.6667px"><span style="background-color:transparent"><font size="4"><a href="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/working-groups-list/imaging-data-standards-wg/microscope-calibration-project">Microscope Calibration Project</a>: a new joint project in Imaging Data Standards and Joint Analysis working group</font></span></div>\\ </li></ul>\\ <ul style="font-size:13.3333px"><li>\\ <div style="line-height:16.6667px"><span style="background-color:transparent;font-size:large">Scientific Webinar Series this Month: </span></div>\\ </li></ul>\\ </div>\\ <div>\\ <ul>\\ <div>\\ <ul>\\ <div style="font-size:13.3333px">\\ <p style="line-height:16.6667px"><b style="background-color:transparent"><font color="#3d85c6" face="arial, sans-serif"><font size="4">October 27, 2017</font></font></b></p>\\ </div>\\ <div>\\ <p style="line-height:16.6667px"><span style="font-size:13.3333px;color:rgb(51,51,51);font-weight:bold;background-color:transparent"><font face="arial, sans-serif"><font color="#000000" size="4">Presenter: </font></font></span><b style="font-size:13.3333px;color:rgb(34,34,34);font-family:Arial;background-color:transparent"><span style="font-size:17.3333px">Adan Horta</span></b><span style="font-size:13.3333px;background-color:transparent"><font face="arial, sans-serif"><font color="#000000"><span style="font-size:13.3333px;color:rgb(51,51,51)"> </span></font></font></span><span style="background-color:transparent"><font face="arial, sans-serif" size="4"><span style="font-size:13.3333px">(</span>Columbia University<span style="font-size:13.3333px">)</span></font></span><span style="font-size:13.3333px;background-color:transparent"><font face="arial, sans-serif"><font color="#000000" size="4"><span style="color:rgb(51,51,51);font-size:13.3333px"> </span><span style="color:rgb(51,51,51);font-size:14.6667px">-</span><span style="color:rgb(51,51,51);font-size:13.3333px"> </span></font></font></span><span style="background-color:transparent;white-space:pre-wrap"><font color="#222222" face="arial, sans-serif" size="4">Interchromosomal Interactions as a Source of Neuronal Diversity</font></span></p>\\ </div>\\ <div>\\ <p style="line-height:16.6667px"><span style="font-size:13.3333px;color:rgb(51,51,51);font-weight:bold;background-color:transparent"><font face="arial, sans-serif"><font color="#000000" size="4">Presenter: </font></font></span><span style="background-color:transparent;background-image:initial;background-position:initial;background-repeat:initial"><b><font size="4"><font face="arial, sans-serif">Horng Ou</font><font face="Arial"><span style="font-size:13.3333px"> </span></font></font></b></span><span style="font-size:large;background-color:transparent;font-family:Arial;background-image:initial;background-position:initial;background-repeat:initial">(Salk Institute)</span><font face="arial, sans-serif" style="font-size:13.3333px;background-color:transparent"><span style="font-size:large;background-image:initial;background-position:initial;background-repeat:initial"> - </span></font><span style="background-color:transparent"><font face="arial, sans-serif" size="4"> Visualizing chromatin ultrastructure in interphase and mitotic cells by ChromEMT </font></span></p>\\ </div></ul>\\ </div></ul>\\ </div>\\ <div style="font-size:13.3333px"><b style="background-color:transparent;font-size:xx-large;color:rgb(11,83,148)"><font face="georgia, serif">September 2017</font></b><b style="font-size:large;background-color:transparent"><font color="#cc0000"> </font></b></div>\\ <div>\\ <ul><li>\\ <div style="line-height:16.6667px"><span style="background-color:transparent"><span style="background-color:transparent"><font size="4">2017 4DN Annual Meeting was successfully held in Bethesda on September 17 - 20</font></span></span></div>\\ </li></ul>\\ <ul><li>\\ <div style="line-height:16.6667px"><span style="background-color:transparent"><font size="4">Please complete the <a href="https://docs.google.com/forms/d/e/1FAIpQLSfQszioZiYLXZdKzm1ghWoJRNdXHm8rDA8-F-TzieAIjtXZlg/viewform">2017 4DN Annual Meeting Survey</a> before Oct 12. Your feedbacks are greatly appreciated!</font></span></div>\\ </li></ul>\\ <ul><li style="color:rgb(51,51,51);font-weight:bold">\\ <div style="line-height:16.6667px"><font size="4"><span style="color:rgb(0,0,0);font-weight:normal">A quick guide to 4DN visualization software: </span><a href="https://www.nature.com/news/plot-a-course-through-the-genome-1.22553" style="font-weight:normal">Plot a course through the genome</a></font></div>\\ </li></ul>\\ <div>\\ <div>\\ <ul><li>\\ <div style="line-height:16.6667px"><font size="4"><span style="background-color:transparent">The 4D Nucleome</span> perspective paper published in <i>Nature</i>: </font><span style="background-color:transparent"><font size="4"><b><a href="http://www.nature.com/nature/journal/v549/n7671/full/nature23884.html">The 4D nucleome project</a></b></font></span></div>\\ </li>\\ <ul style="font-size:13.3333px"></ul></ul>\\ </div>\\ <div style="font-size:13.3333px">\\ <ul style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:large">\\ <ul style="color:rgb(0,0,0);font-family:arial;font-size:13.3333px">\\ <ul></ul></ul></ul>\\ <ul style="font-size:13.3333px">\\ <ul></ul></ul>\\ </div>\\ </div>\\ <div style="font-size:13.3333px">\\ <div></div>\\ </div>\\ <ul>\\ <ul style="font-size:13.3333px"></ul></ul>\\ </div>\\ <div>\\ <ul style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:large">\\ <ul style="color:rgb(0,0,0);font-family:arial;font-size:13.3333px">\\ <ul></ul></ul></ul>\\ <ul style="font-size:13.3333px">\\ <ul></ul></ul>\\ </div>\\ </div>\\ <div>\\ <div>\\ <div style="font-size:13.3333px"><b style="background-color:transparent;font-size:xx-large;color:rgb(11,83,148)"><font face="georgia, serif">August 2017</font></b><b style="font-size:large;background-color:transparent"><font color="#cc0000"> </font></b></div>\\ <div>\\ <ul><li style="font-size:13.3333px;color:rgb(51,51,51);font-weight:bold">\\ <div style="font-size:13.3333px;line-height:16.6667px"><span style="font-weight:normal;background-color:transparent;color:rgb(0,0,0);font-size:large">2017 4DN Annual Meeting is coming on September 17 - 20:</span></div>\\ </li>\\ <ul><li><font face="arial, sans-serif" size="4">Registration and abstract submission ended on August 15</font></li>\\ <ul><li><font face="arial, sans-serif" size="4">278 members registered</font></li>\\ <li><font color="#222222" face="arial, sans-serif" size="4">128 abstracts submitted</font></li></ul></ul></ul>\\ <ul style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:large"><li style="font-size:13.3333px"><font color="#cc0000" size="4"><b><b style="background-color:transparent"><b style="color:rgb(0,0,0)"><font color="#cc0000" face="arial, sans-serif">\\ <div style="color:rgb(34,34,34);font-weight:normal;display:inline!important">\\ <p style="margin:0px;display:inline!important">4DN Opportunity Pool Initiative announces <a href="https://www.4dnucleome.org/tcpa.html" style="font-family:arial">2017 Transformative Collaborative Project Awards</a></p>\\ </div>\\</font></b></b></b></font></li></ul>\\ <ul style="font-size:13.3333px"></ul>\\ <span style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:large">\\ <ul></ul>\\ </span>\\ <ul style="font-size:13.3333px">\\ <div>\\ <ul>\\ <div style="font-size:13.3333px"></div></ul>\\ </div></ul>\\ <ul><li style="font-size:13.3333px"><font color="#cc0000" size="4"><b><b style="background-color:transparent"><b style="color:rgb(0,0,0)"><font color="#cc0000" face="arial, sans-serif">\\ <div style="color:rgb(34,34,34);font-weight:normal;display:inline!important">\\ <p style="margin:0px;display:inline!important">The EFMA office will be holding an informational webinar on the EFRI FY2018 solicitation on <b><span style="border-bottom:1px dashed rgb(204,204,204)"><span>September 7th, 2017</span></span></b>, <b><span style="border-bottom:1px dashed rgb(204,204,204)"><span>1 p.m.</span></span> Eastern Daylight Time</b></p>\\ </div>\\</font></b></b></b></font></li>\\ <ul><li><font color="#cc0000" size="4"><b><b style="background-color:transparent"><b style="color:rgb(0,0,0)"><font color="#cc0000" face="arial, sans-serif">\\ <div style="color:rgb(34,34,34);font-weight:normal;display:inline!important">\\ <p style="margin:0px;display:inline!important"><b>The topics of the <a href="https://www.nsf.gov/funding/pgm_summ.jsp?pims_id=13708" style="color:rgb(17,85,204);font-weight:normal">FY18 EFRI solicitation</a><span style="font-weight:normal"> are:</span></b></p>\\ </div>\\</font></b></b></b></font></li>\\ <ul><li><font size="4">Chromatin and Epigenetic Engineering (CEE)</font></li>\\ <li><font size="4">Continuum, Compliant, and Configurable Soft Robotics Engineering (C3 SoRo)</font></li></ul>\\ <li><font face="arial, sans-serif" size="4">Registration details for the webinar are available <a href="https://www.nsf.gov/events/event_summ.jsp?cntn_id=242816" style="color:rgb(17,85,204)">here</a><span style="color:rgb(34,34,34)">.</span></font></li></ul></ul>\\ </div>\\ </div>\\ <ul><li style="font-size:13.3333px;color:rgb(51,51,51);font-weight:bold">\\ <div style="font-size:13.3333px;line-height:16.6667px"><span style="font-weight:normal;background-color:transparent;color:rgb(0,0,0);font-size:large">Scientific Webinar Series this Month: </span></div>\\ </li>\\ <div>\\ <ul>\\ <div style="font-size:13.3333px">\\ <p style="line-height:16.6667px"><b style="background-color:transparent"><font color="#3d85c6" face="arial, sans-serif"><font size="4">August 25, 2017</font></font></b></p>\\ </div>\\ <div>\\ <p style="line-height:16.6667px"><span style="font-size:13.3333px;color:rgb(51,51,51);font-weight:bold;background-color:transparent"><font face="arial, sans-serif"><font color="#000000" size="4">Presenter: </font></font></span><span style="background-color:transparent"><font face="arial, sans-serif"><font color="#000000"><font size="4"><b>Kit S. Lam </b></font><font color="#333333"><span style="font-size:13.3333px"> </span></font></font></font></span><span style="font-family:Arial;font-size:large;background-color:transparent">(</span><span style="background-color:transparent;font-size:10pt"><font face="arial, sans-serif" size="4">University of California Davis</font></span><span style="background-color:transparent;font-size:13.3333px"><font face="arial, sans-serif"><font color="#000000" size="4"><span style="color:rgb(51,51,51);font-size:13.3333px"><span style="color:rgb(0,0,0);font-family:Arial;font-size:large">)</span> </span><span style="color:rgb(51,51,51);font-size:14.6667px">-</span><span style="color:rgb(51,51,51);font-size:13.3333px"> </span></font></font></span><span style="background-color:transparent;font-size:10pt;white-space:pre-wrap"><font color="#222222" face="arial, sans-serif" size="4">The use of OBOC combinatorial library method to discover Genetically Encoded Small <span>    </span><span>    </span><span>   </span>Illuminants for cellular imaging</font></span></p>\\ </div>\\ <div>\\ <p style="line-height:16.6667px"><span style="font-size:13.3333px;color:rgb(51,51,51);font-weight:bold;background-color:transparent"><font face="arial, sans-serif"><font color="#000000" size="4">Presenter: </font></font></span><span style="background-color:transparent;background-image:initial;background-position:initial;background-repeat:initial"><b><font size="4"><font face="arial, sans-serif">Suhas Rao</font><font face="Arial"><span style="font-size:13.3333px"> </span></font></font></b></span><span style="font-size:large;background-color:transparent;font-family:Arial;background-image:initial;background-position:initial;background-repeat:initial">(Stanford University)</span><font face="arial, sans-serif" style="font-size:13.3333px;background-color:transparent"><span style="font-size:large;background-image:initial;background-position:initial;background-repeat:initial"> - </span></font><span style="background-color:transparent"><font face="arial, sans-serif" size="4">Tracking the 4D nucleome during cohesin loss and recovery</font></span></p>\\ </div></ul>\\ </div></ul>\\ <ul>\\ <ul style="font-size:13.3333px"></ul></ul>\\ <ul style="font-size:13.3333px">\\ <ul></ul>\\ <ul></ul></ul>\\ </div>\\ <div style="font-size:13.3333px">\\ <ul style="font-size:13.3333px"></ul>\\ </div>\\ </div>\\ <div style="font-size:13.3333px"><b style="background-color:transparent;font-size:xx-large;color:rgb(11,83,148)"><font face="georgia, serif">July 2017</font></b></div>\\ <div>\\ <ul style="font-size:13.3333px"><li><font color="#cc0000" size="4"><b>Reminder: Last 2 weeks for <b>registration of </b>2017 Annual Meeting </b></font></li>\\ <ul><li><font color="#000000" size="4">Registration deadline is August 15, 2017. </font><font size="4">Register here:  <a href="https://4dn-annual-meetings.fluidreview.com/">https://4dn-annual-meetings.fluidreview.com </a></font></li>\\ <li><font color="#000000" size="4">Abstract and poster submission deadline is also August 15, 2017.</font></li>\\ <li><font size="4">Check more information about abstract submission, poster submission, and hotel booking on the wiki page: <a href="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/meetings-and-committees/2017-4d-nucleome-annual-meeting">https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/meetings-and-committees/2017-4d-nucleome-annual-meeting</a></font></li></ul></ul>\\ <ul><li><font size="4">Invitation: WORKSHOP (EXTRA SESSION FOLLOWING THE 2017 4DN MEETING)</font></li>\\ <ul><li><font size="4">Topic: Integrated Approaches for Spatial and Temporal Mapping of Gene Activity in Cells and Tissues</font></li>\\ <li><font size="4">Time: 1:00 to 5:00 PM, Sept 20, 2017</font></li>\\ <li><font size="4">Location: Conference Room B, Neuroscience Center, 6001 Executive Blvd</font></li>\\ <li><font size="4">Session Chairs: Rob Singer, Joan Ritland and Richard Conroy</font></li></ul></ul>\\ <ul><li style="font-size:13.3333px"><font size="4">ISMB Tutorial: 3D Genome Data Processing, Analysis, and Visualization Tutorial</font></li>\\ <ul><li><font size="4"><a href="https://github.com/hms-dbmi/3d-genome-processing-tutorial">https://github.com/hms-dbmi/3d-genome-processing-tutorial</a></font></li></ul></ul>\\ <ul><li style="color:rgb(51,51,51);font-weight:bold">\\ <div style="font-size:13.3333px;line-height:16.6667px"><span style="font-weight:normal;background-color:transparent;color:rgb(0,0,0);font-size:large">Scientific Webinar Series this Month: </span></div>\\ </li>\\ <div>\\ <ul>\\ <div style="font-size:13.3333px">\\ <p style="line-height:16.6667px"><b style="background-color:transparent"><font color="#3d85c6" face="arial, sans-serif"><font size="4">July 28, 2017</font></font></b></p>\\ </div>\\ <div>\\ <p style="line-height:16.6667px"><span style="font-size:13.3333px;color:rgb(51,51,51);font-weight:bold;background-color:transparent"><font face="arial, sans-serif"><font color="#000000" size="4">Presenter: </font></font></span><span style="background-color:transparent"><font face="arial, sans-serif" size="4"><b>Rupesh Amin</b></font></span><span style="background-color:transparent"><font face="arial, sans-serif"><font color="#000000"><span style="font-size:13.3333px;color:rgb(51,51,51)"> </span></font></font></span><span style="background-color:transparent"><font face="arial, sans-serif" size="4">(Juno Therapeutics)</font></span><span style="background-color:transparent;font-size:13.3333px"><font face="arial, sans-serif"><font color="#000000" size="4"><span style="color:rgb(51,51,51);font-size:13.3333px"> </span><span style="color:rgb(51,51,51);font-size:14.6667px">-</span><span style="color:rgb(51,51,51);font-size:13.3333px"> </span></font></font></span><span style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:large;white-space:pre-wrap;background-color:transparent">Engineering a Tethering System to Dissect Gene Regulation in Mouse Embryonic Stem Cells</span></p>\\ </div>\\ <div>\\ <p style="line-height:16.6667px"><span style="font-size:13.3333px;color:rgb(51,51,51);font-weight:bold;background-color:transparent"><font face="arial, sans-serif"><font color="#000000" size="4">Presenter: </font></font></span><span style="background-color:transparent"><font face="arial, sans-serif" size="4"><b>Maximiliaan Huisman</b></font></span><span style="font-size:13.3333px;background-color:transparent;background-image:initial;background-position:initial;background-repeat:initial"><b><font face="Arial" size="4"> </font></b></span><span style="background-color:transparent;font-size:large;font-family:Arial;background-image:initial;background-position:initial;background-repeat:initial">(University of Massachusetts Medical School)</span><font face="arial, sans-serif" style="font-size:13.3333px;background-color:transparent"><span style="font-size:large;background-image:initial;background-position:initial;background-repeat:initial"> - </span></font><span style="background-color:transparent"><font face="arial, sans-serif" size="4">Cryo-FM: moving towards single-basepair resolution in fluorescence microscopy</font></span></p>\\ </div></ul>\\ </div></ul>\\ </div>\\ <div style="font-size:13.3333px"><b style="background-color:transparent;font-size:xx-large;color:rgb(11,83,148)"><font face="georgia, serif">June 2017</font></b></div>\\ <div>\\ <ul><li><font size="4">Reminder of 2017 Annual Meeting registration</font></li>\\ <ul><li><font color="#000000" size="4">Registration deadline is August 15, 2017. </font><font size="4">Register here:  <a href="https://4dn-annual-meetings.fluidreview.com">https://4dn-annual-meetings.fluidreview.com </a></font></li>\\ <li><font color="#000000" size="4">Abstract and poster submission deadline is August 15, 2017.</font></li>\\ <li><font size="4">Check more information about abstract submission, poster submission, and hotel booking on the wiki page: <a href="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/meetings-and-committees/2017-4d-nucleome-annual-meeting">https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/meetings-and-committees/2017-4d-nucleome-annual-meeting</a></font></li></ul></ul>\\ <ul style="font-size:13.3333px"><li><font size="4">New Upcoming Education and Outreach Event</font></li>\\ <ul><li><font color="#000000" size="4"><a href="http://www.google.com/url?q=http%3A%2F%2Fwww.keystonesymposia.org%2Findex.cfm%3Fe%3Dweb.Meeting.Program%26meetingid%3D1542&sa=D&sntz=1&usg=AFQjCNFJnsrrZPpnZICih4dQ-LEzPNDY0g">Chromatin Architecture and Chromosome Organization</a> (March 23 - 27, 2018)</font></li>\\ <ul><li><font color="#000000" size="4">Scientific Organizers: Edith Heard and Peter Fraser</font></li>\\ <li><font size="4">Location: Whistler, British Columbia, Canada </font></li></ul></ul></ul>\\ <ul><li style="color:rgb(51,51,51);font-size:14.6667px;font-weight:bold">\\ <div style="font-size:13.3333px;line-height:16.6667px"><span style="font-weight:normal;background-color:transparent;color:rgb(0,0,0);font-size:large">Scientific Webinar Series this Month: </span></div>\\ </li>\\ <div>\\ <ul>\\ <div style="color:rgb(0,0,0);font-size:13.3333px;font-weight:normal">\\ <p style="line-height:16.6667px"><b style="background-color:transparent"><font color="#3d85c6" face="arial, sans-serif"><font size="4">June 23, 2017</font></font></b></p>\\ </div>\\ <div>\\ <p style="line-height:16.6667px"><span style="color:rgb(51,51,51);font-size:13.3333px;font-weight:bold;background-color:transparent"><font face="arial, sans-serif"><font color="#000000" size="4">Presenter: </font></font></span><span style="background-color:transparent"><font face="arial, sans-serif" size="4"><b>Cory Lindsay</b></font></span><span style="background-color:transparent"><font face="arial, sans-serif"><font color="#000000" size="4"><span style="color:rgb(51,51,51);font-size:13.3333px;font-weight:normal"> </span><span style="color:rgb(51,51,51);font-size:14.6667px;font-weight:normal">(</span>Scripps Research Institute<font color="#333333"><span style="font-size:14.6667px">)</span></font><span style="color:rgb(51,51,51);font-size:13.3333px;font-weight:normal"> </span><span style="color:rgb(51,51,51);font-size:14.6667px;font-weight:normal">-</span><span style="color:rgb(51,51,51);font-size:13.3333px;font-weight:normal"> </span></font></font></span><span style="background-color:transparent"><font color="#222222" face="arial, sans-serif" size="4">Analysis of the nuclear lamina by proteomics and proximity labeling</font></span></p>\\ </div>\\ <div>\\ <p style="line-height:16.6667px"><span style="color:rgb(51,51,51);font-size:13.3333px;font-weight:bold;background-color:transparent"><font face="arial, sans-serif"><font color="#000000" size="4">Presenter: </font></font></span><span style="background-color:transparent"><font face="arial, sans-serif" size="4"><b>Takashi Fukaya</b></font></span><span style="background-color:transparent;font-size:13.3333px;background-image:initial;background-position:initial;background-repeat:initial"><b><font face="Arial" size="4"> </font></b></span><span style="background-color:transparent;font-size:large;font-family:Arial;background-image:initial;background-position:initial;background-repeat:initial">(Princeton University)</span><font face="arial, sans-serif" style="background-color:transparent;font-size:13.3333px"><span style="font-size:large;background-image:initial;background-position:initial;background-repeat:initial"> - </span></font><span style="background-color:transparent"><font face="arial, sans-serif" size="4">Visualization of trans-homologue enhancer-promoter interaction in living Drosophila embryos</font></span></p>\\ </div></ul>\\ </div></ul>\\ <h4>\\ <div></div>\\ </h4>\\ <h4>\\ <ul></ul>\\ </h4>\\ </div>\\ <div style="font-size:13.3333px"><b style="background-color:transparent;font-size:xx-large;color:rgb(11,83,148)"><font face="georgia, serif">May 2017</font></b></div>\\ <div>\\ <h4>\\ <ul><li style="font-size:13.3333px"><font color="#000000" size="4">2017 4D Nucleome Annual Meeting</font></li>\\ <ul><li style="font-size:13.3333px"><font color="#000000" size="4"><span style="font-weight:normal">Registration opens and the deadline is August 15, 2017. Register here:  <a href="https://4dn-annual-meetings.fluidreview.com">https://4dn-annual-meetings.fluidreview.com </a></span></font></li>\\ <li><font size="4"><font color="#000000"><span style="font-weight:normal">Check more information about abstract submission, poster submission, and hotel booking on the wiki page: </span></font><font style="font-weight:normal"><a href="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/meetings-and-committees/2017-4d-nucleome-annual-meeting">https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/meetings-and-committees/2017-4d-nucleome-annual-meeting</a></font></font></li></ul></ul>\\ </h4>\\ <h4>\\ <ul><li><font color="#000000" face="arial, sans-serif" size="4"><span style="font-weight:100">4DN Investigator Featured on "Science Happens!"  Watch Dr. Job Dekker describe how the folding of DNA strands holds cues to human health <a href="https://www.statnews.com/2016/03/31/dna-shape-double-helix-dekker/">here</a>.</span></font></li></ul>\\ <div></div>\\ </h4>\\ <h4>\\ <ul><li><font color="#000000" size="4"><span style="font-weight:normal">Conversations: A Guide to Packing Your DNA. </span><i style="font-weight:normal">Cell</i><span style="font-weight:normal"> editor Marta Koch and the 4D Nucleome grantees Drs. Job Dekker, Mitchell Guttman, and Stavros Lomvardas discuss the organization of genetic material in the nucleus, how it occurs, and why it matters. Find it <a href="http://www.sciencedirect.com/science/article/pii/S0092867416303373">here</a>.</span></font></li></ul>\\ </h4>\\ <h4>\\ <ul><li>\\ <div style="font-size:13.3333px;line-height:16.6667px"><span style="font-weight:normal;background-color:transparent;color:rgb(0,0,0);font-size:large">Scientific Webinar Series this Month: </span></div>\\ </li>\\ <div>\\ <ul>\\ <div style="font-size:13.3333px;color:rgb(0,0,0);font-weight:normal">\\ <p style="line-height:16.6667px"><b style="background-color:transparent"><font color="#3d85c6" face="arial, sans-serif"><font size="4">May 26, 2017</font></font></b></p>\\ </div>\\ <div>\\ <p style="line-height:16.6667px"><span style="font-size:13.3333px;background-color:transparent"><font face="arial, sans-serif"><font color="#000000" size="4">Presenter: </font></font></span><span style="background-color:transparent"><font color="#000000" face="arial, sans-serif" size="4">Vishnu Dileep</font></span><span style="background-color:transparent"><font face="arial, sans-serif"><font color="#000000" size="4"><span style="font-size:13.3333px;font-weight:normal"> </span><span style="font-weight:normal">(</span><span style="font-weight:normal">Florida State University</span><span style="font-weight:normal">)</span><span style="font-size:13.3333px;font-weight:normal"> </span><span style="font-weight:normal">-</span><span style="font-size:13.3333px;font-weight:normal"> </span></font></font></span><span style="background-color:transparent;font-weight:normal"><font color="#222222" face="arial, sans-serif" size="4">Measuring genome-wide replication timing in single cells</font></span></p>\\ </div>\\ <div>\\ <p style="line-height:16.6667px"><span style="font-size:13.3333px;background-color:transparent"><font face="arial, sans-serif"><font color="#000000" size="4">Presenter: </font></font></span><span style="background-color:transparent;color:rgb(0,0,0);font-size:13.3333px;font-weight:normal;background-image:initial;background-position:initial;background-repeat:initial"><b><font face="arial, sans, sans-serif" size="4"><span style="white-space:pre-wrap">Yaniv Lubling</span></font><font face="Arial" size="4"> </font></b></span><span style="background-color:transparent;color:rgb(0,0,0);font-weight:normal;font-size:large;font-family:Arial;background-image:initial;background-position:initial;background-repeat:initial">(Weizmann Institute of Science, Israel)</span><font face="arial, sans-serif" style="background-color:transparent;color:rgb(0,0,0);font-size:13.3333px;font-weight:normal"><span style="font-size:large;background-image:initial;background-position:initial;background-repeat:initial"> - </span><span style="background-color:transparent"><font size="4"><span style="white-space:pre-wrap">Cell cycle dynamics of chromosomal organization at single-cell resolution</span></font></span></font></p>\\ </div></ul>\\ </div></ul>\\ </h4>\\ <h4 style="font-size:13.3333px">\\ <ul><li><br>\\ </li></ul>\\ </h4>\\ </div>\\ <div style="font-size:13.3333px"><b style="background-color:transparent;font-size:xx-large;color:rgb(11,83,148)"><font face="georgia, serif">April 2017</font></b></div>\\ <div>\\ <h4>\\ <ul><li><font color="#000000" size="4">2017 4D Nucleome Annual Meeting</font></li>\\ <ul><li><font color="#000000" size="4"><span style="font-weight:normal">Dates: Sept 17 - 20, 2017</span></font></li>\\ <li><font color="#000000" size="4"><span style="font-weight:normal">Location: Bethesda North Marriott Hotel & Conference Center, 5701 Marinelli Road North Bethesda, Maryland 20852, USA</span></font></li>\\ <li><font size="4" style="font-weight:normal">The 2017 4D Nucleome Annual Meeting is a closed meeting for the 4DN funded PIs and associates.Attendees are responsible for all their travel and lodging expenses.</font></li>\\ <li><font size="4" style="font-weight:normal">2017 4D Nucleome Annual Meeting information will be posted to the <a href="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/meetings-and-committees/2017-4d-nucleome-annual-meeting" style="color:rgb(17,85,204);font-family:Calibri,sans-serif">4DN WIKI</a></font></li></ul></ul>\\ <ul><li><font size="4"><span style="background-color:transparent"><font color="#222222" face="arial, sans-serif"><span style="font-weight:normal">An "<a href="http://www.4dnucleome.org/outreach.html">Education and Outreach</a>" page launched on the 4DN Portal.</span></font></span><span style="font-weight:normal"> It includes information for 4DN related tutorials and meetings. Thanks to 4DN consortium members, a total of 4 workshops and conference tutorials were given in 2016. In addition to 4DN annual meeting, 4DN consortium members will organize two conferences and one tutorial in 2017. </span></font></li></ul>\\ </h4>\\ <h4>\\ <ul><li><font color="#000000" size="4"><span style="background-color:transparent"><span style="font-weight:normal">Members from three groups in 4DN (Leonid Mirny, Nils Gehlenborg, and Jian Ma) will jointly offer a data analysis tutorial during ISMB 2017 conference: <a href="https://www.iscb.org/ismbeccb2017-program/tutorials#a3">https://www.iscb.org/ismbeccb2017-program/tutorials#a3</a></span></span></font></li></ul>\\ <ul><li><font color="#000000" size="4"><span style="font-weight:normal">4DN consortium's twitter account is 4DNucleome; please feel free to use @4DNucleome to emphasize that this tweet is related to 4DN.</span></font> </li></ul>\\ <ul><li><font color="#000000" size="4"><span style="font-weight:normal">4DN web portal featured new software tools, including HiGlass and 3D Genome Browser, as well as the previously featured WashU Genome Browser. See more at: http://www.4dnucleome.org/software.html</span></font></li></ul>\\ <ul><li>\\ <div style="font-size:13.3333px;line-height:16.6667px"><font color="#000000" size="3"><span style="font-size:1.1em;background-color:transparent;font-weight:normal">Ordering information for HAP1 cells have been updated to the Cell Repository wiki page, thanks to Bas van Steensel. </span></font><font color="#000000" size="3" style="background-color:transparent"><span style="font-size:1.1em;background-color:transparent;font-weight:normal">To date (April 17, 2017), a total of 13 4DN cell lines have become available.</span></font><font size="3" style="background-color:transparent;color:rgb(0,0,0)"><span style="font-size:1.1em;background-color:transparent;font-weight:normal"> </span></font><span style="background-color:transparent;color:rgb(0,0,0);font-size:medium;font-weight:normal">  </span></div>\\ </li></ul>\\ </h4>\\ <h4>\\ <ul><li><font color="#000000" size="4"><span style="font-weight:normal">A new working group "Joint 4D Nucleome Analysis" is formed. Job Dekker and Feng Yue will serve as co-chairs of this working group. Read about the <a href="https://docs.google.com/document/d/1n4QPYp47CDINj2Rci2vl6xaxf-ihDxEoQMvyhwq_buA/edit">objective, experimental design, and timeline</a> of this working group. Find more information on the wiki <a href="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/working-groups-list/joint-4dn-analysis">Joint 4DN Analysis</a> page.</span></font></li></ul>\\ </h4>\\ <h4>\\ <ul><li>\\ <div style="font-size:13.3333px;line-height:16.6667px"><span style="font-weight:normal;background-color:transparent;color:rgb(0,0,0);font-size:large">Scientific Webinar Series this Month: </span></div>\\ </li>\\ <div>\\ <ul>\\ <div style="font-size:13.3333px;color:rgb(0,0,0);font-weight:normal">\\ <p style="line-height:16.6667px"><b style="background-color:transparent"><font color="#3d85c6" face="arial, sans-serif"><font size="4">April 28, 2017</font></font></b></p>\\ </div>\\ <div>\\ <p style="line-height:16.6667px"><span style="font-size:13.3333px;background-color:transparent"><font face="arial, sans-serif"><font color="#000000" size="4">Presenter:</font></font></span><span style="background-color:transparent"><font color="#000000" face="arial, sans-serif" size="4">Yongdae Shin</font></span><span style="background-color:transparent"><font face="arial, sans-serif"><font color="#000000" size="4"><span style="font-size:13.3333px;font-weight:normal"> (</span><span style="font-weight:normal">Princeton University</span><span style="font-size:13.3333px;font-weight:normal">) - </span></font></font></span><span style="background-color:transparent;font-weight:normal"><font color="#222222" face="arial, sans-serif" size="4">Optical control of intracellular phase transitions</font></span></p>\\ </div>\\ <div>\\ <p style="line-height:16.6667px"><span style="font-size:13.3333px;background-color:transparent"><font face="arial, sans-serif"><font color="#000000" size="4">Presenter:</font></font></span><span style="background-color:transparent"><font color="#000000" face="arial, sans-serif" size="4">Yodai Takei</font></span><span style="background-color:transparent"><font face="arial, sans-serif"><font color="#000000" size="4"><span style="font-size:13.3333px;font-weight:normal"> (</span><span style="font-weight:normal">Caltech</span><span style="font-size:13.3333px;font-weight:normal">) - </span></font></font></span><span style="background-color:transparent;font-weight:normal"><font color="#222222" face="arial, sans-serif" size="4">Multiplexed dynamic imaging of genomic loci by combined CRISPR imaging and DNA sequential FISH</font></span></p>\\ </div></ul>\\ </div></ul>\\ </h4>\\ <h4>\\ <ul style="font-size:13.3333px"></ul>\\ </h4>\\ </div>\\ <div style="font-size:13.3333px"><b style="font-size:xx-large;color:rgb(11,83,148)"><font face="georgia, serif">March 2017</font></b></div>\\ <div>\\ <h4>\\ <ul><li><font size="4"><span style="font-weight:normal">4DN membership and contact information.</span></font></li>\\ <ul><li><font size="4"><span style="font-weight:normal">The latest <a href="https://docs.google.com/spreadsheets/d/13gFjHcYEwYL2Xpr9-IHtJNYYnYlAQVdyXvCUeSzla6w/edit?usp=sharing">4DN network contact list</a> is now updated in March 2017</span></font><span style="font-weight:normal;font-size:large;background-color:transparent">. NIH 4DN funded PIs are responsible for keeping the member information of their 4DN funded group current (PIs: please see 4DN wiki -> PIs and associates on how to update member information).</span></li>\\ <li><font size="4"><span style="font-weight:normal">4DN wiki accounts and "4DN network contact list" have been synchronized. Ambiguous accounts that cannot be validated by the <a href="https://docs.google.com/spreadsheets/d/13gFjHcYEwYL2Xpr9-IHtJNYYnYlAQVdyXvCUeSzla6w/edit?usp=sharing">4DN network contact list</a> have been removed. </span></font></li></ul></ul>\\ <ul><li><font size="4"><span style="font-weight:normal">Email groups for 4DN network and each Working Group have been organized to facilitate communication across subgroups of the consortium. Please check 4DN wiki (<a href="https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/listservs" style="font-family:arial,sans-serif">Email groups</a><span style="color:rgb(34,34,34);font-family:arial,sans-serif">) for detail.</span></span></font></li></ul>\\ </h4>\\ <h4>\\ <ul><li><font size="4" style="font-weight:normal">The bioRxiv has created a channel for our preprints, which can be accessed here: <a href="http://connect.biorxiv.org/relate/content/66" style="color:rgb(17,85,204);font-family:arial,sans-serif">http://connect.biorxiv.org/relate/content/66</a><span style="color:rgb(34,34,34);font-family:arial,sans-serif">. <span style="background-color:transparent">The content of the channel is manually curated. If you notice that one of your preprints is missing or incorrectly assigned to the list, please contact</span><span style="background-color:transparent"> </span><a href="mailto:nils@hms.harvard.edu" style="color:rgb(17,85,204);background-color:transparent">nils@hms.harvard.edu</a><span style="background-color:transparent"> or</span><span style="background-color:transparent"> </span><a href="mailto:leonid@mit.edu" style="color:rgb(17,85,204);background-color:transparent">leonid@mit.edu</a><span style="background-color:transparent">. The fastest way to get your preprint included is to forward a link as soon as it has appeared on the bioRxiv.</span></span> </font></li></ul>\\ </h4>\\ <h4>\\ <div>\\ <ul><li><font color="#000000" size="4"><span style="background-color:transparent"><span style="font-weight:normal">Scientific Webinar Series this Month: </span></span></font></li></ul>\\ <div>\\ <ul>\\ <div style="font-size:13.3333px;color:rgb(0,0,0);font-weight:normal">\\ <p style="line-height:16.6667px"><b style="background-color:transparent"><font color="#3d85c6" face="arial, sans-serif"><font size="4"><span>    </span>March 24, 2017</font></font></b></p>\\ </div>\\ <div style="font-size:13.3333px">\\ <p style="line-height:16.6667px"><span style="background-color:transparent"><font face="arial, sans-serif"><font color="#000000" size="4"><span>   <span> </span></span>Presenter: Naoki Kubo<span style="font-weight:normal"> (UCSD) - </span></font></font></span><span style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:large;font-weight:normal;background-color:transparent">Analysis of Chromatin Organization after Acute Loss of CTCF in Mouse Embryonic Stem Cells</span></p>\\ </div>\\ <div>\\ <p style="line-height:16.6667px"><span style="font-size:13.3333px;background-color:transparent"><font face="arial, sans-serif"><font color="#000000" size="4"><span>    </span>Presenter: Anders Sejr Hansen<span style="font-weight:normal"> (UC Berkeley) - </span></font></font></span><span style="background-color:transparent;font-weight:normal"><font color="#222222" face="arial, sans-serif" size="4">CTCF and cohesin regulate chromatin loop stability with distinct dynamics</font></span></p>\\ </div></ul>\\ </div>\\ </div>\\ </h4>\\ </div>\\ <div><b style="color:rgb(11,83,148)"><font face="georgia, serif" size="6">February 2017</font></b></div>\\ <div>\\ <h4>\\ <ul><li><font size="4" style="font-weight:normal">WiCell <u>International</u> Ordering Process (H1) is ready and available on 4DN Cell Repository. </font></li></ul>\\ <ul><li><font size="4" style="font-weight:normal">The <a href="http://www.4dnucleome.org/protocols.html" style="background-color:transparent">4DN Hi-C data generation protocol</a><span style="background-color:transparent"> has been approved.</span></font></li></ul>\\ <ul><li><font size="4" style="font-weight:normal">Latest <a href="http://www.4dnucleome.org/4dn-pre-prints.html" style="background-color:transparent">4DN Pre-prints</a><span style="background-color:transparent"> and news feed are now available on the 4DN Portal homepage.</span></font></li></ul>\\ <ul><li><font size="4" style="font-weight:normal"><i style="background-color:transparent"><a href="https://doi.org/10.1101/103499">The 4D Nucleome Project</a> </i><span style="background-color:transparent">perspective paper has been submitted.</span></font></li></ul>\\ </h4>\\ <ul><li><font face="verdana, sans-serif" size="4">Scientific Webinar Series this Month:</font></li>\\ <div>\\ <p style="line-height:16.6667px"><b style="background-color:transparent"><font color="#3d85c6" face="arial, sans-serif"><span style="font-size:13.3333px"> <font size="4">   </font></span><font size="4">February 24, 2017</font></font></b></p>\\ </div>\\ <div>\\ <p style="line-height:16.6667px"><b style="font-family:arial,sans-serif"><font size="3">  </font><font size="4"> Presenter: </font></b><font size="4"><span style="background-color:transparent;line-height:14.2667px;background-image:initial;background-position:initial;background-repeat:initial"><span style="font-family:arial,sans,sans-serif;white-space:pre-wrap;background-color:transparent"><b>Anastassia Vertii </b></span><font face="Arial"> (UMASS)</font><font face="Arial" style="font-size:13.3333px"> </font><font face="arial, sans-serif" style="font-size:13.3333px">-</font></span></font><span style="font-size:13.3333px;background-color:transparent"><font face="arial, sans-serif"><span style="white-space:pre-wrap"><font size="4">High-resolution mapping of nucleolar-associated chromatin in mouse cells</font></span></font></span></p>\\ <p style="line-height:16.6667px"><b style="font-family:arial,sans-serif"><font size="3">  </font><font size="4"> Presenter: </font></b><span style="background-color:transparent;font-family:Arial;background-image:initial;background-position:initial;background-repeat:initial"><b><font size="4"><span style="font-family:arial,sans,sans-serif;white-space:pre-wrap;background-color:transparent">Sofia Quinodoz</span> </font></b></span><span style="font-size:large;background-color:transparent;font-family:Arial;background-image:initial;background-position:initial;background-repeat:initial">(CalTech)</span><font face="arial, sans-serif" style="font-size:13.3333px;background-color:transparent"><span style="font-size:large;background-image:initial;background-position:initial;background-repeat:initial"> - </span><span style="white-space:pre-wrap;background-color:transparent"><font size="4">Mapping RNA and DNA in higher-order nuclear structures</font></span></font></p>\\ </div></ul>\\ <ul style="font-size:13.3333px"></ul>\\ </div>\\ <div><b style="font-size:xx-large;color:rgb(11,83,148)"><font face="georgia, serif">January 2017</font></b></div>\\ <div>\\ <ul><li><font face="verdana, sans-serif" size="4">The 4DN pre-prints are now accessible through the 4DN Portal, under Publications -> 4DN pre-prints. Note that only the pre-prints that are released on a public repository are accessible through the 4DN Portal. </font></li></ul>\\ <ul><li><font face="verdana, sans-serif" size="4">Scientific Webinar Series this Month:</font></li></ul>\\ <div>\\ <p style="line-height:16.6667px"><b><font color="#3d85c6" face="arial, sans-serif"><span style="font-size:13.3333px">    <span>    <span>    </span></span></span><font size="4">January 27, 2017</font></font></b></p>\\ <p style="line-height:16.6667px"><font size="4"><font face="arial, sans-serif"><b><span>    <span>    </span></span>Presenter: Ewan Birney - </b></font><span style="color:rgb(34,34,34);font-family:arial,sans-serif">ChromoTrace: Simulation and reconstruction of 3D chromosome configuration by super-resolution microscopy</span><span style="font-family:arial,sans,sans-serif;white-space:pre-wrap;background-color:transparent">.</span></font></p>\\ <p style="line-height:16.6667px"><font size="4"><font face="arial, sans-serif"><b><span>    <span>    </span></span>Presenter: Nan Hua - </b></font><font face="arial, sans-serif">3D genome structure calculation by data integration.</font></font></p>\\ </div>\\ <ul><li>\\ <div><font face="verdana, sans-serif" size="4">Tier I cells are available to order, for more information on how to order, check the Cell Repository wiki page.</font></div>\\ </li></ul>\\ <ul><li>\\ <div><font face="verdana, sans-serif" size="4">The 2017 4DN Annual Meeting will be in Bethesda, MD on September 17-20, 2017 at the North Bethesda Marriott Hotel and Conference Center. More information regarding the meeting will be available soon.</font></div>\\ </li></ul>\\ <div><br>\\ </div>\\ </div>\\ <div><font size="6"><b style="color:rgb(11,83,148)"><font face="georgia, serif">December 2016</font></b></font>\\ <div>\\ <ul><li><font face="verdana, sans-serif" size="4"><font style="background-color:transparent"><font color="#ff0000"><i><u>NEW</u></i></font> </font><font style="background-color:transparent">OH con</font><font style="background-color:transparent">tact </font><font style="background-color:transparent">email - <a href="mailto:oh@4dnucleome.org">oh@4dnucleome.org</a>. </font>Emails sent to 4dnucleome@gmail.com will be forwarded to the new email. Announcements should be sent the new 4DN Network email <a href="mailto:4dn-network@4dnucleome.org" style="text-decoration:underline">4dn-network@4dnucleome.org</a></font></li></ul>\\ <ul><li><font face="verdana, sans-serif" size="4">The Organizational Hub has updated the 4DN contact members list, after receiving the input from almost all contact PIs. 4DN Members updated Contact list is here <a href="https://docs.google.com/spreadsheets/d/13gFjHcYEwYL2Xpr9-IHtJNYYnYlAQVdyXvCUeSzla6w/edit?usp=sharing" style="text-decoration:underline">4DN NETWORK LIST</a>. </font></li></ul>\\ <ul><li><font face="verdana, sans-serif" size="4">The 4DN eGrant system for the Transformative Collaborative Project Award (TCPA) has been posted in the web portal - <a href="http://www.4dnucleome.org/tcpa.html">http://www.4dnucleome.org/tcpa.html</a>.</font></li></ul>\\ <ul><li><font face="verdana, sans-serif" size="4">Don't forget to check the 4D Nucleome <a href="https://twitter.com/4DNucleome">Twitter</a>, <a href="https://www.facebook.com/4DNucleome-1840252952876682/">Facebook</a>, and <a href="https://www.linkedin.com/in/4d-nucleome-857952126">Linkedin</a> accounts.</font></li></ul>\\ <div><font face="verdana, sans-serif"><font size="4">        </font></font></div>\\ </div>\\ <div dir="ltr"><br>\\ </div>\\ </div> | + | ====== Newsletter Archive: 2018 ====== |
| + | {{4dn:phase1:4dn-logo_1_orig.png?200|}} | ||
| + | |||
| + | ===== December 2018 ===== | ||
| + | |||
| + | * 2018 4DN Annual Meeting and 4DN-ASCB Satellite Meeting concluded successfully! | ||
| + | |||
| + | * New 4DN web portal launched! [[https://www.4dnucleome.org/|https://www.4dnucleome.org/]] | ||
| + | |||
| + | * 4DN wiki is under maintenance. | ||
| + | |||
| + | * Job Opportunities: 6 job positions are still open. Please check the [[https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/job-opportunities|4DN Job Advertisement Page]] for detailed information. | ||
| + | |||
| + | * 4DN Publications: Please add your preprints into [[http://connect.biorxiv.org/relate/content/66|bioRxiv 4DN channel]] by contacting nils@hms.harvard.edu or leonid@mit.edu. Please also feel free to notify us of your new publications through email: OH@4dnucleome.org or twitter @4DNucleome. | ||
| + | |||
| + | * Stats by Dec 31, 2018 | ||
| + | |||
| + | * Preprints ([[http://connect.biorxiv.org/relate/content/66|bioRxiv 4DN channel]]): 135 in total | ||
| + | |||
| + | * Publications ([[https://www.ncbi.nlm.nih.gov/pubmed/?cmd=historysearch&querykey=1|Pubmed]]): 170 in total. | ||
| + | |||
| + | * New preprints in December ([[http://connect.biorxiv.org/relate/content/66|bioRxiv 4DN channel]]): | ||
| + | |||
| + | * Mayank NK Choudhary, Ryan Z Friedman, Julia T Wang, Hyo Sik Jang, Xiaoyu Zhuo, Ting Wang. Co-opted transposons help perpetuate conserved higher-order chromosomal structures. doi: [[https://doi.org/10.1101/485342|https://doi.org/10.1101/485342]] | ||
| + | |||
| + | * Recent new publications: | ||
| + | |||
| + | * Haifeng Wang, Xiaoshu Xu, Cindy M. Nguyen, Yanxia Liu, Yuchen Gao, Xueqiu Lin, Timothy Daley, Nathan H. Kipniss, Marie La Russa, Lei S. Qi. CRISPR-Mediated Programmable 3D Genome Positioning and Nuclear Organization. Cell. 2018 Nov 15;175(5):1405-1417.e14. doi: 10.1016/j.cell.2018.09.013. | ||
| + | |||
| + | * Happy New Year 2019! | ||
| + | |||
| + | |||
| + | ===== November 2018 ===== | ||
| + | * 2018 4DN Annual Meeting and 4DN-ASCB Satellite Meeting are coming next week (Dec 4-7). See you in San Diego | ||
| + | * Upcoming workshops and conferences: | ||
| + | * 2019 Gordon Research Conference - [[https://www.grc.org/genome-architecture-in-cell-fate-and-disease-conference/2019/|The Eukaryotic Genome in 4 Dimensions: Integrative Approaches to Bridging Genotype and Phenotype]] | ||
| + | * When: August 4-9, 2019 | ||
| + | * Where: The Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong | ||
| + | * Chairs: Dave Gilbert and Yijun Ruan, Vice chairs: Victor Corces and Danny Leung | ||
| + | * Job Opportunities: 6 job positions are still open. Please check the [[https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/job-opportunities|4DN Job Advertisement Page]] for detailed information. | ||
| + | * 4DN Publications: Please add your preprints into [[http://connect.biorxiv.org/relate/content/66|bioRxiv 4DN channel]] by contacting nils@hms.harvard.edu or leonid@mit.edu. Please also feel free to notify us of your new publications through email: OH@4dnucleome.org or twitter @4DNucleome. | ||
| + | * New preprints in November ([[http://connect.biorxiv.org/relate/content/66|bioRxiv 4DN channel]]): | ||
| + | * Zhangming Yan, Norman Huang, Weixin Wu, Weizhogn Chen, Yiqun Jiang, Jingyao Chen, Xuerui Huang, Xingzhao Wen, Jie Xu, Qiushi Jin, Kang Zhang, Zhen Chen, Shu Chien, Sheng Zhong. Genome-wide co-localization of RNA-DNA interactions and fusion RNA pairs. doi: https://doi.org/10.1101/47201 | ||
| + | |||
| + | ===== October 2018 ===== | ||
| + | * 2018 4DN Annual Meeting registration has been closed on November 1st. | ||
| + | * Upcoming workshops and conferences: | ||
| + | * 2019 Gordon Research Conference - [[https://www.grc.org/genome-architecture-in-cell-fate-and-disease-conference/2019/|The Eukaryotic Genome in 4 Dimensions: Integrative Approaches to Bridging Genotype and Phenotype]] | ||
| + | * When: August 4-9, 2019 | ||
| + | * Where: The Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong | ||
| + | * Chairs: Dave Gilbert and Yijun Ruan, Vice chairs: Victor Corces and Danny Leung | ||
| + | * Associate member applications approved ([[https://docs.google.com/spreadsheets/d/1aUsUkypUiSu2uWHTKI3Hf5JRoiiMbXRMbnHqVmz7RYI/edit#gid=0|check here to know more]]) | ||
| + | * Caterina Strambio | ||
| + | * Peter Yingxiao Wang | ||
| + | * The Tier 2 cell line mESC G4 provided by University of Washington is available now. [[https://www.4dnucleome.org/cell-lines.html|Click here to learn more]]. | ||
| + | * Job Opportunities: 6 job positions are still open. Please check the [[https://sites.google.com/a/4dnucleome.org/4d-nucleome-wiki/job-opportunities|4DN Job Advertisement Page]] for detailed information. | ||
| + | * 4DN Publications: Please add your preprints into [[http://connect.biorxiv.org/relate/content/66|bioRxiv 4DN channel]] by contacting nils@hms.harvard.edu or leonid@mit.edu. Please also feel free to notify us of your new publications through email: OH@4dnucleome.org or twitter @4DNucleome. | ||
| + | * Stats by Oct 30, 2018 | ||
| + | * Preprints ([[http://connect.biorxiv.org/relate/content/66|bioRxiv 4DN channel]]): 113 in total | ||
| + | * Publications (Pubmed): 170 in total. | ||
| + | * Recent new publications: | ||
| + | * Jesse R. Dixon, Jie Xu, Vishnu Dileep, Ye Zhan, Fan Song, Victoria T. Le, Galip Gürkan Yardımcı, Abhijit Chakraborty, Darrin V. Bann, Yanli Wang, Royden Clark, Lijun Zhang, Hongbo Yang, Tingting Liu, Sriranga Iyyanki, Lin An, Christopher Pool, Takayo Sasaki, Juan Carlos Rivera-Mulia, Hakan Ozadam, Bryan R. Lajoie, Rajinder Kaul, Michael Buckley, Kristen Lee, Morgan Diegel, Dubravka Pezic, Christina Ernst, Suzana Hadjur, Duncan T. Odom, John A. Stamatoyannopoulos, James R. Broach, Ross C. Hardison, Ferhat Ay, William Stafford Noble, Job Dekker, David M. Gilbert & Feng Yue. Integrative detection and analysis of structural variation in cancer genomes. Nature Genetics. volume 50, pages1388–1398 (2018). doi: https://doi.org/10.1038/s41588-018-0195-8 | ||
| + | * Scientific Webinar Series this Month: October 26, 2018 | ||
| + | * Presenter: Martin Falk (Massachusetts Institute of Technology) - "Heterochromatin drives organization of conventional and inverted nuclei" [[https://docs.google.com/a/4dnucleome.org/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDpmZGYxMmRjZGRlMjgxYjU|Link to presenter slides]] | ||
| + | * | ||
| + | * Presenter: Andrew Barentine (Yale University) - “3D Nanoscopy of 10,000 Nuclei a Day" [[https://docs.google.com/a/4dnucleome.org/viewer?a=v&pid=sites&srcid=NGRudWNsZW9tZS5vcmd8NGQtbnVjbGVvbWUtd2lraXxneDo3NmVmYWRmODgwYmE5MjJi|Link to presenter slides]] | ||
| + | * | ||
| + | ===== September 2018 ===== | ||
| + | * November 1: Deadline for registration, abstract submission and hotel booking for the 2018 4DN Annual Meeting. | ||
| + | * CLICK HERE TO REGISTER | ||
| + | * Click here to go the annual meeting wiki page for more information | ||
| + | * Job Opportunities: 6 job positions are still open. Please check the 4DN Job Advertisement Page for detailed information. | ||
| + | * 4DN Publications: Please add your preprints into bioRxiv 4DN channel by contacting nils@hms.harvard.edu or leonid@mit.edu. Please also feel free to notify us of your new publications through email: OH@4dnucleome.org or twitter @4DNucleome. | ||
| + | * New preprints in September (bioRxiv 4DN channel): | ||
| + | * Sadowski, M., Kraft, A., Szalaj, P., Wlasnowolski, M., Tang, Z., Ruan, Y., Plewczynski, D. Spatial Chromatin Architecture Alteration by Structural Variations in Human Genomes at Population Scale. doi: https://doi.org/10.1101/266981 — Posted: 2018-09-14 | ||
| + | * Recent new publications: | ||
| + | * James H. Sun, Linda Zhou, Daniel J. Emerson, Sai A. Phyo, Katelyn R. Titus, Wanfeng Gong, Thomas G. Gilgenast, Jonathan A. Beagan, Beverly L. Davidson, Flora Tasson, Jennifer E. Phillips-Cremins. Disease-Associated Short Tandem Repeats Co-localize with Chromatin Domain Boundaries. Cell. 2018 Sep 20;175(1):224-238.e15. doi: https://doi.org/10.1016/j.cell.2018.08.005. | ||
| + | * Marc A. Marti-Renom, Genevieve Almouzni, Wendy A. Bickmore, Kerstin Bystricky, Giacomo Cavalli, Peter Fraser, Susan M. Gasser, Luca Giorgetti, Edith Heard, Mario Nicodemi, Marcelo Nollmann, Modesto Orozco, Ana Pombo & Maria-Elena Torres-Padilla. Challenges and guidelines toward 4D nucleome data and model standards. Nature Genetics. volume 50, pages1352–1358 (2018). https://doi.org/10.1038/s41588-018-0236-3 | ||
| + | * Scientific Webinar Series this Month: September 28, 2018 | ||
| + | * Presenter: Adrien Senecal (Albert Einstein College of Medicine) - The p53 transcription factor regulates transcriptional burst frequency and multiple steps of formation and disruption of chromatin on the p21 gene locus [Link to presenter slides] | ||
| + | * Presenter: Matthew Denholtz (University of California, San Diego) - Neutrophil genome dynamics in development and pathogen encounter [Link to presenter slides] | ||
| + | |||
| + | ===== August 2018 ===== | ||
| + | * Register now for the 2018 4DN Annual Meeting (Dec 5-7, 2018). | ||
| + | * CLICK HERE TO REGISTER | ||
| + | * Click here to go the annual meeting wiki page for more information | ||
| + | * IHEC annual meeting registration (deadline Oct 15) and abstract submission (deadline Sept 26). You can find more information here: http://ias.ust.hk/events/2018ihec/index.html | ||
| + | * Job Opportunities: 8 job positions are still open. Please check the 4DN Job Advertisement Page for detailed information. | ||
| + | * Associate member applications approved (check here to know more) | ||
| + | * Maxwell Libbrecht and Michael Hoffman | ||
| + | * Kai Tan | ||
| + | * 4DN Publications: Please add your preprints into bioRxiv 4DN channel by contacting nils@hms.harvard.edu or leonid@mit.edu. Please also feel free to notify us of your new publications through email: OH@4dnucleome.org or twitter @4DNucleome. | ||
| + | * New preprints in August (bioRxiv 4DN channel): | ||
| + | * Kim, S., Dunham, M., Shendure, J. A combination of transcription factors mediates inducible interchromosomal pairing. doi: https://doi.org/10.1101/385047. Posted: 2018-08-05 | ||
| + | * Rieger, B., Stallinga, S., Hulleman, C. N., Thorsen, R. O., Grunwald, D., Hammer, M. Photon count estimation in single-molecule localization microscopy. doi: https://doi.org/10.1101/396424. Posted: 2018-08-20 | ||
| + | * Recent new publications: | ||
| + | * Peter Kerpedjiev, Nezar Abdennur, Fritz Lekschas, Chuck McCallum, Kasper Dinkla, Hendrik Strobelt, Jacob M. Luber, Scott B. Ouellette, Alaleh Azhir, Nikhil Kumar, Jeewon Hwang, Soohyun Lee, Burak H. Alver, Hanspeter Pfister, Leonid A. Mirny, Peter J. Park and Nils Gehlenborg. HiGlass: web-based visual exploration and analysis of genome interaction maps. Genome Biology. 2018, Aug 24;19(1):125. doi: https://doi.org/10.1186/s13059-018-1486-1. | ||
| + | * Yu Chen, Yang Zhang, Yuchuan Wang, Liguo Zhang, Eva K. Brinkman, Stephen A. Adam, Robert Goldman, Bas van Steensel, Jian Ma, Andrew S. Belmont. Mapping 3D genome organization relative to nuclear compartments using TSA-Seq as a cytological ruler. Journal of Cell Biology. August 28, 2018. DOI: https://doi.org/10.1083/jcb.201807108 | ||
| + | * Won-Ki Cho, Jan-Hendrik Spille, Micca Hecht, Choongman Lee, Charles Li, Valentin Grube, Ibrahim I. Cisse. Mediator and RNA polymerase II clusters associate in transcription-dependent condensates. Science. 27 Jul 2018: Vol. 361, Issue 6400, pp. 412-415. doi: https://doi.org/10.1126/science.aar4199 | ||
| + | * Shasha Chong, Claire Dugast-Darzacq, Zhe Liu, Peng Dong, Gina M. Dailey, Claudia Cattoglio, Alec Heckert, Sambashiva Banala, Luke Lavis, Xavier Darzacq, Robert Tjian. Imaging dynamic and selective low-complexity domain interactions that control gene transcription. Science 27 Jul 2018:Vol. 361, Issue 6400, eaar2555. doi: https://doi.org/10.1126/science.aar2555 | ||
| + | * Hongtao Chen, Michal Levo, Lev Barinov, Miki Fujioka, James B. Jaynes & Thomas Gregor. Dynamic interplay between enhancer–promoter topology and gene activity. Nature Genetics. 2018 Volume 50, pages1296–1303. doi: https://doi.org/10.1038/s41588-018-0175-z | ||
| + | * Sofia A. Quinodoz, Noah Ollikainen, Barbara Tabak, Ali Palla, Jan Marten Schmidt, Elizabeth Detmar, Mason M. Lai, Alexander A. Shishkin, Prashant Bhat, Yodai Takei, Vickie Trinh, Erik Aznauryan, Pamela Russell, Christine Cheng, Marko Jovanovic, Amy Chow, Long Cai, Patrick McDonel, Manuel Garber, Mitchell Guttman. Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus. Cell. 2018, Volume 174, Issue 3, 26, Pages 744-757.e24. doi: https://doi.org/10.1016/j.cell.2018.05.024 | ||
| + | * Scientific Webinar Series this Month: August 24, 2018 | ||
| + | * Presenter: Roel Neijts (Institute Pasteur) - Exploring the TAD: specific enhancer-promoter interactions within regulatory domains [Link to presenter slides] | ||
| + | * Presenter: Arturas Petronis (Center for Addiction and Mental Health) - Spatiotemporal dynamics of chromatin: the circadian perspective [Link to presenter slides] | ||
| + | * | ||
| + | * | ||
| + | ===== July 2018 ===== | ||
| + | |||
| + | * Register now for the 2018 4DN Annual Meeting (Dec 5-7, 2018). | ||
| + | * CLICK HERE TO REGISTER | ||
| + | * Click here to go the annual meeting wiki page for more information | ||
| + | * IHEC annual meeting is now open for registration. You can find more information here: http://ias.ust.hk/events/2018ihec/index.html | ||
| + | * The NIH Common Fund 4D Nucleome program has released an RFI to solicit feedback from the national and international community on the remaining challenges towards a comprehensive analysis of the mammalian 4D Nucleome. Suggestions from all are welcome. Written responses must be submitted by August 6, 2018to 4DNucleome@mail.nih.gov. | ||
| + | * Textbook seeks inputs and contributors. OH drafted a textbook titled 3D Genome: from technology to visualization, using an E-book format, with college students as the target audience. Please give comments and suggestions by emailing: nucleomebook@4dnucleome.org. Content contributors are welcome! | ||
| + | * | ||
| + | * Job Opportunities: 8 job positions are open. Please check the 4DN Job Advertisement Page for detailed information. | ||
| + | * 4DN Publications: Please add your preprints into bioRxiv 4DN channel by contacting nils@hms.harvard.edu or leonid@mit.edu. Please also feel free to notify us of your new publications through email: OH@4dnucleome.org or twitter @4DNucleome. | ||
| + | * New preprints in July: | ||
| + | * Mayuri Rege, Ji Hun Kim, Jacqueline Valeri, Margaret Dunagin, Aryeh Metzger, Wanfeng Gong, Jonathan Beagan, Arjun Raj, Jennifer E Phillips-Cremins. LADL: Light-activated dynamic looping for endogenous gene expression control. doi: https://doi.org/10.1101/349340. Posted June 18, 2018. | ||
| + | * New publications in July: | ||
| + | * Xiaoyi Cao, Zhangming Yan, Qiuyang Wu, Alvin Zheng and Sheng Zhong. GIVE: portable genome browsers for personal websites. Genome Biology, 2018, 19:92. doi: https://doi.org/10.1186/s13059-018-1465-6 | ||
| + | * 4DN Youtube Channel | ||
| + | * 3 new videos released on the 4D Nucleome Scientific Webinar Series playlist. | ||
| + | * Elucidating the role of nascent RNA at enhancers | ||
| + | * Interacting differentially methylated regions (iDMRs) to infer chromosome looping | ||
| + | * Trac-looping: a novel technique for analysis of chromatin accessibility and interaction | ||
| + | * Scientific Webinar Series this Month: July 27, 2018 | ||
| + | * Presenter: Tom Pastinen (McGill University) - Interacting differentially methylated regions (iDMRs) to infer chromosome looping | ||
| + | * [Link to presenter slides] https://youtu.be/Q5nUrT_3xnk | ||
| + | * Presenter: Keji Zhao (NHLBI) - Trac-looping: a novel technique for analysis of chromatin accessibility and interaction | ||
| + | * [Link to presenter slides] https://youtu.be/qjTZWtLJ7Cg | ||
| + | |||
| + | ===== June 2018 ===== | ||
| + | * Registration for the 2018 4DN Annual Meeting (Dec 5-7, 2018) is open now. | ||
| + | * CLICK HERE TO REGISTER | ||
| + | * Click here to go the annual meeting wiki page for more information | ||
| + | * Cell line WTC-11 has been moved from a Tier 2 to a Tier 1 cell line, as approved by the Cells WG. We now have 5 cell lines on Tier 1. Check the cell line wiki page for more details. | ||
| + | * Upcoming workshops and conferences: | ||
| + | * Centromere Biology - 2018 Gordon Research Conference | ||
| + | * When: July 29 - August 3, 2018 | ||
| + | * Where: Mount Snow Resort, West Dover, Vermont, USA | ||
| + | * Organizers: Aaron Straight and Sylvia Erhardt | ||
| + | * Job Opportunities: Please check the 4DN Job Advertisement Page for detailed information. | ||
| + | * 2 new job opportunities: | ||
| + | * Bioinformatics Scientist -- Harvard Medical School - DCIC (Link to details) | ||
| + | * Senior Bioinformatics Scientist -- Harvard Medical School - DCIC (Link to details) | ||
| + | * 6 previous job opportunities are still open. | ||
| + | * 4DN Publications: Please add your preprints into bioRxiv 4DN channel. Please also feel free to notify us of your new publications through email: OH@4dnucleome.org or twitter @4DNucleome. | ||
| + | * New preprints in June: | ||
| + | * Kim, J., Han, K. Y., Khanna, N., Ha, T., Belmont, A. S. Nuclear speckle fusion via long-range directional motion regulates the number and size of speckles. doi: 10.1101/34795. Posted: 2018-06-15 | ||
| + | * New publications in June: | ||
| + | * Ipek Tasan Gabriela Sustackova Liguo Zhang Jiah Kim Mayandi Sivaguru Mohammad HamediRad Yuchuan Wang Justin Genova Jian Ma Andrew S Belmont, Huimin Zhao. CRISPR/Cas9-mediated knock-in of an optimized TetO repeat for live cell imaging of endogenous loci. Nucleic Acids Research, Published: 15 June 2018. doi: https://doi.org/10.1093/nar/gky501 | ||
| + | * Ji Hun Kim, Katelyn R.Titus, Wanfeng Gong, Jonathan A. Beagan, Zhendong Cao, Jennifer E.Phillips-Cremins. 5C-ID: Increased resolution Chromosome-Conformation-Capture-Carbon-Copy with in situ 3C and double alternating primer design. Methods, Volume 142, 1 June 2018, Pages 39-46. doi: https://doi.org/10.1016/j.ymeth.2018.05.005 | ||
| + | * Yang Yang, Quanquan Gu, Yang Zhang, Takayo Sasaki, Julianna Crivello, Rachel J. O'Neill, David M. Gilbert, Jian Ma. Continuous-Trait Probabilistic Model for Comparing Multi-species Functional Genomic Data. Cell Systems. Published Online: June 20, 2018. doi: https://doi.org/10.1016/j.cels.2018.05.022 | ||
| + | * Weizhong Chen, Zhangming Yan, Simin Li, Norman Huang, Xuerui Huang, Jin Zhang, Sheng Zhong. RNAs as Proximity-Labeling Media for Identifying Nuclear Speckle Positions Relative to the Genome. iScience. Volume 4, p204–215, 29 June 2018. doi: https://doi.org/10.1016/j.isci.2018.06.005 | ||
| + | * Ruochi Zhang Yuchuan Wang Yang Yang Yang Zhang Jian Ma. Predicting CTCF-mediated chromatin loops using CTCF-MP. Bioinformatics, Volume 34, Issue 13, 1 July 2018, Pages i133–i141. doi: https://doi.org/10.1093/bioinformatics/bty248 | ||
| + | * Scientific Webinar Series this Month: June 22, 2018 | ||
| + | * Presenter: Nicola Neretti (Brown University) - Inference and Validation of Chromosomes' 3D Structure | ||
| + | * [Link to presenter slides] | ||
| + | * Presenter: Andrew Field (Harvard Medical School) - Elucidating the role of nascent RNA at enhancers | ||
| + | * [Link to presenter slides] https://youtu.be/PC5v5axTSFs | ||
| + | * | ||
| + | ===== May 2018 ===== | ||
| + | |||
| + | * Registration for the 2018 4DN Annual Meeting (Dec 5-7, 2018) is open. | ||
| + | * CLICK HERE TO REGISTER | ||
| + | * Click here to go the Annual Meeting wiki page for more information | ||
| + | * Upcoming workshops and conferences: | ||
| + | * Centromere Biology - 2018 Gordon Research Conference | ||
| + | * When: July 29 - August 3, 2018 | ||
| + | * Where: Mount Snow Resort, West Dover, Vermont, USA | ||
| + | * Organizers: Aaron Straight and Sylvia Erhardt | ||
| + | * Job Opportunities: Please check the 4DN Job Advertisement page for detail information. | ||
| + | * 1 new job opportunity: | ||
| + | * Postdoc positions (multiple, including NIH-funded Nucleomics project) -- California Institute of Technology (Link to detail) | ||
| + | * 5 previous job opportunities are still open. | ||
| + | * 4DN Publications | ||
| + | * Stats by May 31, 2018 | ||
| + | * Preprints (bioRxiv 4DN channel): 108 in total | ||
| + | * Publications (Pubmed): 157 in total, 2 new publications in May | ||
| + | * New publications in May: | ||
| + | * Rivera-Mulia JC, Dimond A, Vera D, Trevilla-Garcia C, Sasaki T, Zimmerman J, Dupont C, Gribnau J, Fraser P, Gilbert DM. Allele-specific control of replication timing and genome organization during development. Genome Res. 2018 May 7 [Epub ahead of print]. doi: 10.1101/gr.232561.117 | ||
| + | * Marchal C, Sasaki T, Vera D, Wilson K, Sima J, Rivera-Mulia JC, Trevilla-García C, Nogues C, Nafie E, Gilbert DM. Genome-wide analysis of replication timing by next-generation sequencing with E/L Repli-seq.Nat Protoc. 2018 May;13(5):819-839. doi: 10.1038/nprot.2017.148 | ||
| + | * 4DN Youtube Channel | ||
| + | * 3 new videos released on the 4D Nucleome Scientific Webinar Series playlist. | ||
| + | * CUT&RUN: Efficient genome-wide profiling of the epigenomic landscape | ||
| + | * Looking beyond pairwise 3D conformation of the genome by MC-4C | ||
| + | * How the Genome Awakens in Zebrafish | ||
| + | * Scientific Webinar Series this Month: May 25, 2018 | ||
| + | * Presenter: Amin Allahyar (Hubrecht Institute) - Looking beyond pairwise 3D conformation of the genome by MC-4C HD | ||
| + | * [Link to presenter slides] https://youtu.be/PFskL_9TfI4 | ||
| + | * Presenter: Brad Cairns (University of Utah) and Antonio Giraldez (Yale University) - How the Genome Awakens in Zebrafish | ||
| + | * [Link to presenter slides] https://youtu.be/vzy4WbU5Y5Q | ||
| + | |||
| + | ===== April 2018 ===== | ||
| + | |||
| + | * Registration for the 2018 4DN Annual Meeting (Dec 5-7, 2018) is open now. | ||
| + | * CLICK HERE TO REGISTER | ||
| + | * Click here to the annual meeting wiki page for more information | ||
| + | * Announcing 4DN Cell Engineering Discussion Group, a forum for making and sharing new engineered cell lines. | ||
| + | * Announcing Collaboration plaza, a new wiki page for seeking collaboration opportunities within the 4DN network. | ||
| + | * Job Opportunities: 5 job opportunities are still open. Please check detail information on 4DN Job Advertisement page. | ||
| + | * 4DN Publications | ||
| + | * Stats by Apr 30, 2018 | ||
| + | * Preprints (bioRxiv 4DN channel): 108 in total, 3 new preprints in April | ||
| + | * Publications (Pubmed): 156 in total. | ||
| + | * New preprints in April: | ||
| + | * RNAs as proximity labeling media for identifying nuclear speckle positions relative to the genome. Weizhong Chen, Zhangming Yan, Simin Li, Norman Huang, Xuerui Huang, Jin Zhang, Sheng Zhong. doi: https://doi.org/10.1101/300483 | ||
| + | * Pattern-Driven Navigation in 2D Multiscale Visual Spaces with Scalable Insets. Fritz Lekschas, Michael Behrisch, Benjamin Bach, Peter Kerpedjiev, Nils Gehlenborg, Hanspeter Pfister. doi: https://doi.org/10.1101/301036 | ||
| + | * TSA-Seq Mapping of Nuclear Genome Organization. Yu Chen, Yang Zhang, Yuchuan Wang, Liguo Zhang, Eva K. Brinkman, Stephen A. Adam, Robert Goldman, Bas van Steensel, Jian Ma, Andrew S. Belmont. doi: https://doi.org/10.1101/307892 | ||
| + | * Scientific Webinar Series this Month: | ||
| + | * April 27, 2018 | ||
| + | * | ||
| + | * Presenter: Karla Neugebauer (Yale University) - The Cell Nucleus under Stress | ||
| + | * | ||
| + | * [Link to presenter slides] | ||
| + | * Presenter: Steve Henikoff (Fred Hutchinson Cancer Research Center) - CUT&RUN: Efficient genome-wide profiling of the epigenomic landscape | ||
| + | * | ||
| + | * [Link to presenter slides] | ||
| + | * | ||
| + | ===== March 2018 ===== | ||
| + | |||
| + | * Announcing 4DN Cell Engineering Discussion Group, a forum for making and sharing new engineered cell lines. | ||
| + | * Announcing Collaboration plaza, a new wiki page for seeking collaboration opportunities within the 4DN network. | ||
| + | * New Job Opportunities: Check detail information on 4DN Job Advertisement page | ||
| + | * Senior Computational Biologist -- The Florida State University (FSU) Center for Genomics (CGPM) | ||
| + | * Computational biology postdoc position to analyze chromatin architecture in cancer -- Jane Skok and Richard Bonneau New York University School of Medicine and NYU Data Sciences | ||
| + | * Postdoc position to study chromatin architecture in cancer: experience in chromosome conformation and capture AND CRISPR preferred -- Jane Skok and New York University School of Medicine | ||
| + | * Postdoc position to study dynamic chromatin architecture and transcription in developmental systems -- Thomas Gregor, Princeton University (USA) and Institut Pasteur (France) | ||
| + | * Assistant in Research (12 month salaried, Molecular Biology) -- Florida State University Department of Biological Science Core Facility | ||
| + | * 4DN Publications | ||
| + | * Stats by Mar 31, 2018 | ||
| + | * Preprints (bioRxiv 4DN channel): 105 in total. | ||
| + | * Publications (Pubmed): 156 in total. 1 new publication in March, 2018. | ||
| + | * Recent publication highlights: | ||
| + | * J. H. Gibcus, K.Samejima, L. Goloborodko, I. Samejima, N. Naumova, J. Nuebler, M. T. Kanemaki, L. Xie, J. R. Paulson, W. C. Earnshaw, L. A. Mirny, J. Dekker, A pathway for mitotic chromosome formation. Science 359, eaao6135 (2018). | ||
| + | * M. Ganji, I. A.Shaltiel, S. Bisht, E. Kim, A. Kalichava, C. H. Haering, C. Dekker. Real-time imaging of DNA loop extrusion by condensing. Science 359, eaar7831(2018). | ||
| + | * 4DN Youtube Channel released two new videos from Scientific Webinar Series (Feb 23, 2018). | ||
| + | * Paul Fields (University of Washington) - Dynamics of Genome Reorganization during Human Cardiogenesis | ||
| + | * Caroline Bartman (University of Pennsylvania) - Frequency modulation of polymerase recruitment via transcriptional bursting is a dominant mode of transcriptional regulation | ||
| + | * Scientific Webinar Series this Month: | ||
| + | * March 23, 2018 | ||
| + | * | ||
| + | * Presenter: Rajarshi P Ghosh (Stanford University) - Chromatin dynamics: Motional signatures of transcriptional state | ||
| + | * | ||
| + | * [Link to presenter slides] | ||
| + | * | ||
| + | ===== February 2018 ===== | ||
| + | |||
| + | * Job advertisement page is created on 4DN wiki. Welcome to post job advertisement! | ||
| + | * 4DN Scientific Webinar Series videos are on 4DN Youtube Channel now. | ||
| + | * Scientific Webinar Series this Month: The videos of the two presentations will be released on 4DN Youtube Channel. | ||
| + | * February 23, 2018 | ||
| + | * | ||
| + | * Presenter: Paul Fields (University of Washington) - Dynamics of Genome Reorganization during Human Cardiogenesis | ||
| + | * | ||
| + | * [Link to presenter slides] | ||
| + | * Presenter: Caroline Bartman (University of Pennsylvania) - Frequency modulation of polymerase recruitment via transcriptional bursting is a dominant mode of transcriptional regulation | ||
| + | * | ||
| + | * [Link to presenter slides] | ||
| + | * 4DN Publications | ||
| + | * Stats by Feb 28, 2018 | ||
| + | * Preprints (bioRxiv 4DN channel): 105 in total, 64 out of them unpublished. 5 new preprints in Feb 2018. | ||
| + | * Publications (Pubmed): 155 in total. | ||
| + | * Job Opportunities: | ||
| + | * Position/Title Employer Job Type Post Date Deadline Status Apply methods / contacts Detail Link | ||
| + | * 1 Senior Computational Biologist The Florida State University (FSU) Center for Genomics (CGPM) Full-time non-tenure-track Feb 10, 2018 NA Open Online apply Indeed | ||
| + | |||
| + | ===== January 2018 ===== | ||
| + | |||
| + | * 4DN Program Announces Associate Membership. Read the PDF file for more information. | ||
| + | * Scientific Webinar Series this Month: | ||
| + | * January 26, 2018 | ||
| + | * | ||
| + | * Presenter: Yi Kou (University of Southern California) - Mapping genome 3D structure by direct DNA-DNA photo-crosslinking and click enrichment | ||
| + | * | ||
| + | * Presenter: Paul Olivier (University of Toronto) - Developing a new framework to detect and link protein complexes to specific chromatin interactions | ||
| + | * | ||
| + | * Presenter: Meizhen Zheng (The Jackson Laboratory of Genomic Medicine) - Multiplex Chromatin Interaction Analysis with Single Molecule Precision | ||
| - | ****** ** | ||
4dn/phase1/newsletter_archive/newsletter_2018.1550616399.txt.gz · Last modified: 2025/04/22 16:21 (external edit)