4D Nucleome Network Wiki

Agenda -

1. Schedule for future presentations
   1. March 25: PLAC-seq/HiChIP standard presentation by Miao Yu
   2. May 27th: GAM standard presentation by Ana Pombo lab
   3. To be confirmed - in situ ChIA-PET from Ruan lab
   4. Feature maps from Hi-C datasets
   5. TSA-Seq. (Andy mentioned that they were trying to put out Version 2 protocol)
   6. sciHi-C (from Jay Shendure lab)
   7. micro-C (data generated, submitted, not discussed)
   8. Cut & Run (data generated, submitted, needs recommendation and approval)
   9. Trac-loop
   10. MARGI (from Sheng Zhong lab, data generated, submitted)
2. Need to look at the SC minutes to see which protocols are in production, and approved. (DNase-HiC, in situ HiC, DamID, repli-seq, ChIA-PET)
   1. Additional techniques that have data submitted but need approval
      1. Someone from DCIC can help.
3. Any additional omic standards to be discussed?
   DCIC topic - what constitute a replicate set?
   Protocol.io. Protocol hubs?

Action items -

1. for Bing and Erez the PIs for future presentations.
2. Make final recommendations for a few methods that have been discussed but not yet received final approval.

Table below was copied from previous document (circa. 2017)