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4dn:phase1:working_groups:omics_data_standards:minutes-02-25-2019
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4dn:phase1:working_groups:omics_data_standards:minutes-02-25-2019 [2019/03/25 13:08] xiaoyi_cao |
4dn:phase1:working_groups:omics_data_standards:minutes-02-25-2019 [2025/04/22 16:21] (current) |
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| - Schedule for future presentations | - Schedule for future presentations | ||
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| - March 25: PLAC-seq/HiChIP standard presentation by Miao Yu | - March 25: PLAC-seq/HiChIP standard presentation by Miao Yu | ||
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| - May 27th: GAM standard presentation by Ana Pombo lab | - May 27th: GAM standard presentation by Ana Pombo lab | ||
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| - To be confirmed - in situ ChIA-PET from Ruan lab | - To be confirmed - in situ ChIA-PET from Ruan lab | ||
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| - Feature maps from Hi-C datasets | - Feature maps from Hi-C datasets | ||
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| - TSA-Seq. (Andy mentioned that they were trying to put out Version 2 protocol) | - TSA-Seq. (Andy mentioned that they were trying to put out Version 2 protocol) | ||
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| - sciHi-C (from Jay Shendure lab) | - sciHi-C (from Jay Shendure lab) | ||
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| - micro-C (data generated, submitted, not discussed) | - micro-C (data generated, submitted, not discussed) | ||
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| - Cut & Run (data generated, submitted, needs recommendation and approval) | - Cut & Run (data generated, submitted, needs recommendation and approval) | ||
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| - Trac-loop | - Trac-loop | ||
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| - MARGI (from Sheng Zhong lab, data generated, submitted) | - MARGI (from Sheng Zhong lab, data generated, submitted) | ||
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| - Need to look at the SC minutes to see which protocols are in production, and approved. (DNase-HiC, in situ HiC, DamID, repli-seq, ChIA-PET) | - Need to look at the SC minutes to see which protocols are in production, and approved. (DNase-HiC, in situ HiC, DamID, repli-seq, ChIA-PET) | ||
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| - Additional techniques that have data submitted but need approval | - Additional techniques that have data submitted but need approval | ||
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| - Someone from DCIC can help. | - Someone from DCIC can help. | ||
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| - Any additional omic standards to be discussed?\\ DCIC topic - what constitute a replicate set?\\ Protocol.io. Protocol hubs? | - Any additional omic standards to be discussed?\\ DCIC topic - what constitute a replicate set?\\ Protocol.io. Protocol hubs? | ||
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| - for Bing and Erez the PIs for future presentations. | - for Bing and Erez the PIs for future presentations. | ||
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| - Make final recommendations for a few methods that have been discussed but not yet received final approval. | - Make final recommendations for a few methods that have been discussed but not yet received final approval. | ||
4dn/phase1/working_groups/omics_data_standards/minutes-02-25-2019.1553544497.txt.gz · Last modified: 2025/04/22 16:21 (external edit)