4D Nucleome Network Wiki

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Agenda -

Schedule for future presentations

March 25: PLAC-seq/HiChIP standard presentation by Miao Yu

May 27th: GAM standard presentation by Ana Pombo lab

To be confirmed - in situ ChIA-PET from Ruan lab

Feature maps from Hi-C datasets

TSA-Seq. (Andy mentioned that they were trying to put out Version 2 protocol)

sciHi-C (from Jay Shendure lab)

micro-C (data generated, submitted, not discussed)

Cut & Run (data generated, submitted, needs recommendation and approval)

Trac-loop

MARGI (from Sheng Zhong lab, data generated, submitted)

Need to look at the SC minutes to see which protocols are in production, and approved. (DNase-HiC, in situ HiC, DamID, repli-seq, ChIA-PET)

Additional techniques that have data submitted but need approval

Someone from DCIC can help.

Any additional omic standards to be discussed? DCIC topic - what constitute a replicate set?

Protocol.io. Protocol hubs?

Action items -

for Bing and Erez the PIs for future presentations.

Make final recommendations for a few methods that have been discussed but not yet received final approval.
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Table below was copied from previous document (circa. 2017)