This is the introduction for each working group, it could be a brief summary of aims, objectives or other things.

The Analysis Working Group aims to identify, select, and if necessary implement computational methods for uniform processing and subsequent integration of the data produced by the 4DN consortium. AWG will also aim to identify outside data sets and tools that would benefit integrative analysis of 4DN data. While uniform processing and integrative analyses may not be possible for many of the data types being generated by the 4DN, AWG hopes to benefit the consortium by sharing the analysis expertise of individual teams through detailed presentations, discussions of common tools and data formats.

• 4DN DAWG HiC Pipeline Planning Document

From March 1, 2018, the meetings of JAWG and DAWG merge together to the weekly 4DN JAWG/DAWG Meeting. The 4DN JAWG/DAWG Meeting is on every Thursday at 1:00-2:00 pm ET (Eastern Time), 10:00-11:00 am PT (Pacific Time).

You can use email address meeting-4dn-dj@4dnucleome.org to send emails to all the JAWG/DAWG meeting members.

All the meeting information are listed on JAWG wiki page. Click to JAWG wiki page to find agenda and notes.

Weekly Call - 4DN JAWG/DAWG Meeting
Every Thursday（from March 1, 2018)

1:00-2:00 pm ET (Eastern Time), 10:00-11:00 am PT (Pacific Time)

Click here to Join WebEx meeting
Meeting number: 805 283 801
Meeting password: uJe93m63
Host key: 347076

Join by phone
+1-415-655-0002 US Toll

Access code: 805 283 801

WEBEX EMERGENCY CONTACT INFORMATION:

KATE RIVERA

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1/13/2016

Links:

• google doc page.
• Additional notes.

3/4/2016

• Agenda:
  • Dekker lab HiC pipeline - Bryan Lajoie
• Links:
  • presentation.
  • Some notes

4/26/2016

• Agenda:
  • Presentation on Hi-C quality and reproducibility metrics by Gurkan Yardimci from Bill Noble's group.
• Links:
  • Slides.
  • Additional notes.

7/20/2016

Agenda:

• AWG+OMICS call. Presentations on loop detection from Erez Lieberman and Bing Ren's groups.

Links:

• Webex recording.
• Minutes.

8/3/2016

Agenda:

• AWG+OMICS call. Presentation from Yijun Ruan's group

Links:

• Webex recording.

9/29/2016

Links:

• Minutes.

1/26/2017 HiC reproducibility metrics - Gurkan Yardimici from Bill Noble's group. Slides.
3/23/2017 Presentation by DCIC on uniform pipeline status and plans. Slides. Google Doc. Webex recording.
4/6/2017 Presentation by Michael Sauria (James Taylor lab) on Hi-C reproducibility analysis Slides. Google Doc.
4/20/2017
DCIC updates / alignment (10minutes)
Presentation by Ren lab on Normalization (20min)
Discussion (10 minutes)
Minutes. Webex recording.
5/4/2017
DCIC updates (5minutes)
Presentation by Aiden lab on Normalization (20min)
Presentation by Mirny lab on Normalization (20min)
Discussion: what is needed for consensus? (15min)
Recording.
5/18/2017
Presentation by Francesco Ferrari on TAD callers
Slides. DAWG Meeting Notes 20170518. Recording.
TAD calls.
6/1/2017
Read filtering I: Mirny lab.
Slides. DAWG Meeting Notes 20170601. Recording.
6/15/2017
DCIC updates
Read filtering II
Slides. DAWG Meeting Notes 20170615.
7/13/2017
Continuing on: Presentation by Francesco Ferrari on TAD callers
Please write to Peter_Kharchenko@hms.harvard.edu if you would like to present
Recording.
8/3/2017
TAD Callers: continued discussion
Visualization of TADs
Peter Kerpedjiev (Gehlenborg lab) - HiGlass
Neva C Durand (Aiden Lab) - Arrowhead/Juicebox
Arrowhead Slides. DAWG Meeting Notes 20170803. Recording.
9/7/2017 Defining contact domains: CTCF and cohesion depletion
- Mirny Lab
- Aiden Lab